-
1
-
-
0034614490
-
Signaling - 2000 and Beyond
-
Hunter T (2000) Signaling - 2000 and Beyond. Cell 100: 113-127.
-
(2000)
Cell
, vol.100
, pp. 113-127
-
-
Hunter, T.1
-
2
-
-
0037422596
-
Structural basis and prediction of substrate specificity in protein serine/threonine kinases
-
Brinkworth RI, Breinl RA, Kobe B (2003) Structural basis and prediction of substrate specificity in protein serine/threonine kinases. Proc Natl Acad Sci U S A 100: 74-79.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 74-79
-
-
Brinkworth, R.I.1
Breinl, R.A.2
Kobe, B.3
-
3
-
-
29144510554
-
Substrate specificity of protein kinases and computational prediction of substrates
-
Kobe B, Kampmann T, Forwood JK, Listwan P, Brinkworth RI (2005) Substrate specificity of protein kinases and computational prediction of substrates. Biochim Biophys Acta 1754: 200-209.
-
(2005)
Biochim Biophys Acta
, vol.1754
, pp. 200-209
-
-
Kobe, B.1
Kampmann, T.2
Forwood, J.K.3
Listwan, P.4
Brinkworth, R.I.5
-
4
-
-
0030581751
-
How do protein kinases recognize their substrates?
-
Pinna LA, Ruzzene M (1996) How do protein kinases recognize their substrates? Biochim Biophys Acta 1314: 191-225.
-
(1996)
Biochim Biophys Acta
, vol.1314
, pp. 191-225
-
-
Pinna, L.A.1
Ruzzene, M.2
-
5
-
-
0034383949
-
The regulation of protein function by multisite phosphorylation - a 25 year update
-
Cohen P (2000) The regulation of protein function by multisite phosphorylation - a 25 year update. Trends Biochem Sci 25: 596-601.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 596-601
-
-
Cohen, P.1
-
6
-
-
36849043083
-
Substrate and Docking Interactions in Serine/Threonine Protein Kinases
-
Goldsmith EJ, Akella R, Min X, Zhou T, Humphreys JM (2007) Substrate and Docking Interactions in Serine/Threonine Protein Kinases. Chem Rev 107: 5065-5081.
-
(2007)
Chem Rev
, vol.107
, pp. 5065-5081
-
-
Goldsmith, E.J.1
Akella, R.2
Min, X.3
Zhou, T.4
Humphreys, J.M.5
-
7
-
-
34250878954
-
Mechanisms of specificity in protein phosphorylation
-
Ubersax JA, F JE Jr (2007) Mechanisms of specificity in protein phosphorylation. Nat Rev Mol Cell Bio 8: 530-541.
-
(2007)
Nat Rev Mol Cell Bio
, vol.8
, pp. 530-541
-
-
Ubersax, J.A.1
JE Jr, F.2
-
9
-
-
0030821675
-
Correlated mutations contain information about protein-protein interaction
-
Pazos F, Helmer-Citterich M, Ausiello G, Valencia A (1997) Correlated mutations contain information about protein-protein interaction. J Mol Biol 271: 511-523.
-
(1997)
J Mol Biol
, vol.271
, pp. 511-523
-
-
Pazos, F.1
Helmer-Citterich, M.2
Ausiello, G.3
Valencia, A.4
-
10
-
-
33646766064
-
Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families
-
Halperin I, Wolfson H, Nussinov R (2006) Correlated mutations: advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families. Proteins 63: 832-845.
-
(2006)
Proteins
, vol.63
, pp. 832-845
-
-
Halperin, I.1
Wolfson, H.2
Nussinov, R.3
-
11
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Göbel U, Sander C, Schneider R, Valencia A (1994) Correlated mutations and residue contacts in proteins. Proteins 18: 309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Göbel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
12
-
-
33847356936
-
A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction
-
Eyal E, Frenkel-Morgenstern M, Sobolev V, Pietrokovski S (2007) A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. Proteins 67: 142-153.
-
(2007)
Proteins
, vol.67
, pp. 142-153
-
-
Eyal, E.1
Frenkel-Morgenstern, M.2
Sobolev, V.3
Pietrokovski, S.4
-
13
-
-
0033550256
-
Effective Use of Sequence Correlation and Conservation in Fold Recognition
-
Olmea O, Rost B, Valencia A (1999) Effective Use of Sequence Correlation and Conservation in Fold Recognition. J Mol Biol 295: 1221-1239.
-
(1999)
J Mol Biol
, vol.295
, pp. 1221-1239
-
-
Olmea, O.1
Rost, B.2
Valencia, A.3
-
14
-
-
0033536602
-
Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families
-
Lockless SW, Ranganathan R (1999) Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families. Science 286: 295-299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
15
-
-
0345492351
-
Allosteric determinants in guanine nucleotide-binding proteins
-
Hatley ME, Lockless SW, Gibson SK, Gilman AG, Ranganathan R (2003) Allosteric determinants in guanine nucleotide-binding proteins. Proc Natl Acad Sci U S A 100: 14445-14450.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 14445-14450
-
-
Hatley, M.E.1
Lockless, S.W.2
Gibson, S.K.3
Gilman, A.G.4
Ranganathan, R.5
-
16
-
-
0036721218
-
Mapping Pathways of Allosteric Communication in GroEL by Analysis of Correlated Mutations
-
Kass I, Horovitz A (2002) Mapping Pathways of Allosteric Communication in GroEL by Analysis of Correlated Mutations. Proteins 48: 611-617.
-
(2002)
Proteins
, vol.48
, pp. 611-617
-
-
Kass, I.1
Horovitz, A.2
-
17
-
-
1642304065
-
Structural Determinants of Allosteric Ligand Activation in RXR Heterodimers
-
Shulman AI, Larson C, Mangelsdorf DJ, Ranganathan R (2004) Structural Determinants of Allosteric Ligand Activation in RXR Heterodimers. Cell 116: 417-429.
-
(2004)
Cell
, vol.116
, pp. 417-429
-
-
Shulman, A.I.1
Larson, C.2
Mangelsdorf, D.J.3
Ranganathan, R.4
-
18
-
-
0037219686
-
Evolutionarily conserved networks of residues mediate allosteric communication in proteins
-
Süel GM, Lockless SW, Wall MA, Ranganathan R (2003) Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nat Struct Biol 10: 59-69.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 59-69
-
-
Süel, G.M.1
Lockless, S.W.2
Wall, M.A.3
Ranganathan, R.4
-
19
-
-
0141571239
-
Covariation of amino acid positions in HIV-1 protease
-
Hoffman NG, Schiffer CA, Swanstrom R (2003) Covariation of amino acid positions in HIV-1 protease. Virology 314: 536-548.
-
(2003)
Virology
, vol.314
, pp. 536-548
-
-
Hoffman, N.G.1
Schiffer, C.A.2
Swanstrom, R.3
-
20
-
-
20244387096
-
Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatments
-
Wu TD, Schiffer CA, Gonzales MJ, Taylor J, Kantor R, et al. (2003) Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatments. J Virol 77: 4836-4847.
-
(2003)
J Virol
, vol.77
, pp. 4836-4847
-
-
Wu, T.D.1
Schiffer, C.A.2
Gonzales, M.J.3
Taylor, J.4
Kantor, R.5
-
21
-
-
38049186804
-
Correlated substitution analysis and the prediction of amino acid structural contacts
-
Horner DS, Pirovano W, Pesole G (2008) Correlated substitution analysis and the prediction of amino acid structural contacts. Brief Bioinform 9: 46-56.
-
(2008)
Brief Bioinform
, vol.9
, pp. 46-56
-
-
Horner, D.S.1
Pirovano, W.2
Pesole, G.3
-
22
-
-
3042842115
-
Influence of Conservation on Calculations of Amino Acid Covariance in Multiple Sequence Alignments
-
Fodor AA, Aldrich RW (2004) Influence of Conservation on Calculations of Amino Acid Covariance in Multiple Sequence Alignments. Proteins 56: 211-221.
-
(2004)
Proteins
, vol.56
, pp. 211-221
-
-
Fodor, A.A.1
Aldrich, R.W.2
-
23
-
-
20844452182
-
Detection and reduction of evolutionary noise in correlated mutation analysis
-
Noivirt O, Eisenstein M, Horovitz A (2005) Detection and reduction of evolutionary noise in correlated mutation analysis. Prot Eng Des Sel 18: 247-253.
-
(2005)
Prot Eng Des Sel
, vol.18
, pp. 247-253
-
-
Noivirt, O.1
Eisenstein, M.2
Horovitz, A.3
-
24
-
-
44949105262
-
Exploring allosteric coupling in the α-subunit of Heterotrimeric G proteins using evolutionary and ensemble-based approaches
-
Sayar K, Uǧur Ö, Liu T, Hilser VJ, Onaran O (2008) Exploring allosteric coupling in the α-subunit of Heterotrimeric G proteins using evolutionary and ensemble-based approaches. BMC Struct Biol 8: 23.
-
(2008)
BMC Struct Biol
, vol.8
, pp. 23
-
-
Sayar, K.1
Uǧur, O.2
Liu, T.3
Hilser, V.J.4
Onaran, O.5
-
25
-
-
38849115223
-
Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
-
Dunn SD, Wahl LM, Gloor GB (2008) Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction. Bioinformatics 24: 333-340.
-
(2008)
Bioinformatics
, vol.24
, pp. 333-340
-
-
Dunn, S.D.1
Wahl, L.M.2
Gloor, G.B.3
-
26
-
-
0034724418
-
Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap
-
Wollenberg KR, Atchley WR (2000) Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. Proc Natl Acad Sci U S A 97: 3288-3291.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 3288-3291
-
-
Wollenberg, K.R.1
Atchley, W.R.2
-
27
-
-
33745860948
-
Evolutionarily Conserved Allosteric Network in the Cys Loop Family of Ligand-gated Ion Channels Revealed by Statistical Covariance Analyses
-
Chen Y, Reilly K, Chang Y (2006) Evolutionarily Conserved Allosteric Network in the Cys Loop Family of Ligand-gated Ion Channels Revealed by Statistical Covariance Analyses. J Bio Chem 281: 18184-18192.
-
(2006)
J Bio Chem
, vol.281
, pp. 18184-18192
-
-
Chen, Y.1
Reilly, K.2
Chang, Y.3
-
28
-
-
0033753685
-
Visualizing large hierarchical clusters in hyperbolic space
-
Bingham J, Sudarsanam S (2000) Visualizing large hierarchical clusters in hyperbolic space. Bioinformatics 16: 660-661.
-
(2000)
Bioinformatics
, vol.16
, pp. 660-661
-
-
Bingham, J.1
Sudarsanam, S.2
-
29
-
-
0035967880
-
FUGUE: Sequence-structure Homology Recognition Using Environment-specific Substitution Tables and Structure-dependent Gap Penalties
-
Shi J, Blundell TL, Mizuguchi K (2001) FUGUE: Sequence-structure Homology Recognition Using Environment-specific Substitution Tables and Structure-dependent Gap Penalties. J Mol Biol 310: 243-257.
-
(2001)
J Mol Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
30
-
-
41849110846
-
Structural Evolution of the Protein Kinase-Like Superfamily
-
Scheeff ED, Bourne PE (2005) Structural Evolution of the Protein Kinase-Like Superfamily. PLoS Comput Biol 1: e49.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Scheeff, E.D.1
Bourne, P.E.2
-
31
-
-
18544362952
-
Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions
-
Gloor GB, Martin LC, Wahl LM, Dunn SD (2005) Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions. Biochemistry 44: 7156-7165.
-
(2005)
Biochemistry
, vol.44
, pp. 7156-7165
-
-
Gloor, G.B.1
Martin, L.C.2
Wahl, L.M.3
Dunn, S.D.4
-
32
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, et al. (2005) The Universal Protein Resource (UniProt). Nucleic Acids Res 33: D154-D159.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
-
33
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
Getz G, Levine E, Domany E (2000) Coupled two-way clustering analysis of gene microarray data. Proc Natl Acad Sci U S A 97: 12079-12084.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
34
-
-
0038109937
-
Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data
-
Getz G, Gal H, Kela I, Notterman DA, Domany E (2003) Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data. Bioinformatics 19: 1079-1089.
-
(2003)
Bioinformatics
, vol.19
, pp. 1079-1089
-
-
Getz, G.1
Gal, H.2
Kela, I.3
Notterman, D.A.4
Domany, E.5
-
35
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
Martin LC, Gloor GB, Dunn SD, Wahl LM (2005) Using information theory to search for co-evolving residues in proteins. Bioinformatics 21: 4116-4124.
-
(2005)
Bioinformatics
, vol.21
, pp. 4116-4124
-
-
Martin, L.C.1
Gloor, G.B.2
Dunn, S.D.3
Wahl, L.M.4
-
36
-
-
0042767572
-
Using multiple sequence correlation analysis to characterize functionally important protein regions
-
Saraf MC, Moore GL, Maranas CD (2003) Using multiple sequence correlation analysis to characterize functionally important protein regions. Protein Eng 16: 397-406.
-
(2003)
Protein Eng
, vol.16
, pp. 397-406
-
-
Saraf, M.C.1
Moore, G.L.2
Maranas, C.D.3
-
37
-
-
0035413608
-
Dynamics of cAMP-Dependent Protein Kinase
-
Johnson DA, Akamine P, Radzio-Andzelm E, Madhusudan, Taylor SS (2001) Dynamics of cAMP-Dependent Protein Kinase. Chem Rev 101: 2243-2270.
-
(2001)
Chem Rev
, vol.101
, pp. 2243-2270
-
-
Johnson, D.A.1
Akamine, P.2
Radzio-Andzelm, E.3
Madhusudan, T.S.S.4
-
38
-
-
0032925146
-
The catalytic subunit of cAMP-dependent protein kinase:prototype for an extended network of communication
-
Smith CM, Radzio-Andzelm E, Madhusudan, Akamine P, Taylor SS (1999) The catalytic subunit of cAMP-dependent protein kinase:prototype for an extended network of communication. Prog Biophys Mol Bio 71: 313-341.
-
(1999)
Prog Biophys Mol Bio
, vol.71
, pp. 313-341
-
-
Smith, C.M.1
Radzio-Andzelm, E.2
Madhusudan3
Akamine, P.4
Taylor, S.S.5
-
39
-
-
33750067972
-
Identification of Novel Glycogen Synthase Kinase-3Β Substrate-interacting Residues Suggests a Common Mechanism for Substrate Recognition
-
Ilouz R, Kowalsman N, Eisenstein M, Eldar-Finkelman H (2006) Identification of Novel Glycogen Synthase Kinase-3Β Substrate-interacting Residues Suggests a Common Mechanism for Substrate Recognition. J Bio Chem 281: 30621-30630.
-
(2006)
J Bio Chem
, vol.281
, pp. 30621-30630
-
-
Ilouz, R.1
Kowalsman, N.2
Eisenstein, M.3
Eldar-Finkelman, H.4
-
40
-
-
4444353636
-
Regulation of Protein Kinases: Controlling Activity through Activation Segment Conformation
-
Nolen B, Taylor S, Ghosh G (2004) Regulation of Protein Kinases: Controlling Activity through Activation Segment Conformation. Mol Cell 15: 661-675.
-
(2004)
Mol Cell
, vol.15
, pp. 661-675
-
-
Nolen, B.1
Taylor, S.2
Ghosh, G.3
-
41
-
-
0742324523
-
Crystal Structure of a cAMP-dependent Protein Kinase Mutant at 1.26 Å : New Insights into the Catalytic Mechanism
-
Yang J, Eyck LFT, Xuong N-H, Taylor SS (2004) Crystal Structure of a cAMP-dependent Protein Kinase Mutant at 1.26 Å : New Insights into the Catalytic Mechanism. J Mol Biol 336: 473-487.
-
(2004)
J Mol Biol
, vol.336
, pp. 473-487
-
-
Yang, J.1
Eyck, L.F.T.2
Xuong, N.-H.3
Taylor, S.S.4
-
42
-
-
0034667764
-
p38 Map Kinase Substrate Specificity Differs Greatly for Protein and Peptide Substrates
-
Hawkins J, Zheng S, Frantz B, LoGrasso P (2000) p38 Map Kinase Substrate Specificity Differs Greatly for Protein and Peptide Substrates. Arch Biochem Biophys 382: 310-313.
-
(2000)
Arch Biochem Biophys
, vol.382
, pp. 310-313
-
-
Hawkins, J.1
Zheng, S.2
Frantz, B.3
LoGrasso, P.4
-
43
-
-
0034284131
-
Docking domains and substrate specificity determination for MAP kinases
-
Sharrocks AD, Yang S-H, Galanis A (2000) Docking domains and substrate specificity determination for MAP kinases. Trends Biochem Sci 25: 448-453.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 448-453
-
-
Sharrocks, A.D.1
Yang, S.-H.2
Galanis, A.3
-
44
-
-
15444372337
-
Protein kinase specificity: A strategic collaboration between kinase peptide specificity and substrate recruitment
-
Zhu G, Liu Y, Shaw S (2005) Protein kinase specificity: A strategic collaboration between kinase peptide specificity and substrate recruitment. Cell Cyle 4: 52-56.
-
(2005)
Cell Cyle
, vol.4
, pp. 52-56
-
-
Zhu, G.1
Liu, Y.2
Shaw, S.3
-
45
-
-
29144487401
-
Coupling phosphoryl transfer and substrate interactions in protein kinases
-
Lieser SA, Aubol BE, Wong L, Jennings PA, Adams JA (2005) Coupling phosphoryl transfer and substrate interactions in protein kinases. Biochim Biophys Acta 1754: 191-199.
-
(2005)
Biochim Biophys Acta
, vol.1754
, pp. 191-199
-
-
Lieser, S.A.1
Aubol, B.E.2
Wong, L.3
Jennings, P.A.4
Adams, J.A.5
-
46
-
-
0032528998
-
Crystal structure of JNK3: A kinase implicated in neuronal apoptosis
-
Xie X, Gu Y, Fox T, Coll JT, Fleming MA, et al. (1998) Crystal structure of JNK3: a kinase implicated in neuronal apoptosis. Structure 6: 983-991.
-
(1998)
Structure
, vol.6
, pp. 983-991
-
-
Xie, X.1
Gu, Y.2
Fox, T.3
Coll, J.T.4
Fleming, M.A.5
-
47
-
-
0033539882
-
Identification of Two Distinct Regions of p38 MAPK Required for Substrate Binding and Phosphorylation
-
Gum RJ, Young PR (1999) Identification of Two Distinct Regions of p38 MAPK Required for Substrate Binding and Phosphorylation. Biochem Biophys Res Co 266: 284-289.
-
(1999)
Biochem Biophys Res Co
, vol.266
, pp. 284-289
-
-
Gum, R.J.1
Young, P.R.2
-
48
-
-
33747859628
-
Using Substrate-Binding Variants of the cAMP-Dependent Protein Kinase to Identify Novel Targets and a Kinase Domain Important for Substrate Interactions in Saccharomyces cerevisiae
-
Deminoff SJ, Howard SC, Hester A, Warner S, Herman PK (2006) Using Substrate-Binding Variants of the cAMP-Dependent Protein Kinase to Identify Novel Targets and a Kinase Domain Important for Substrate Interactions in Saccharomyces cerevisiae. Genetics 173: 1909-1917.
-
(2006)
Genetics
, vol.173
, pp. 1909-1917
-
-
Deminoff, S.J.1
Howard, S.C.2
Hester, A.3
Warner, S.4
Herman, P.K.5
-
49
-
-
29144502234
-
The Role of Docking Interactions in Mediating Signaling Input, Output, and Discrimination in the Yeast MAPK Network
-
Reményi A, Good MC, Bhattacharyya RP, Lim WA (2005) The Role of Docking Interactions in Mediating Signaling Input, Output, and Discrimination in the Yeast MAPK Network. Mol Cell 20: 951-962.
-
(2005)
Mol Cell
, vol.20
, pp. 951-962
-
-
Reményi, A.1
Good, M.C.2
Bhattacharyya, R.P.3
Lim, W.A.4
-
50
-
-
0027429591
-
Crystal structures of the myristylated catalytic subunit of cAMP-dependent protein kinase reveal open and closed conformations
-
Zheng J, Knighton DR, Xuong N-H, Taylor SS, Sowadski JM, et al. (1993) Crystal structures of the myristylated catalytic subunit of cAMP-dependent protein kinase reveal open and closed conformations. Protein Sci 2: 1559-1573.
-
(1993)
Protein Sci
, vol.2
, pp. 1559-1573
-
-
Zheng, J.1
Knighton, D.R.2
Xuong, N.-H.3
Taylor, S.S.4
Sowadski, J.M.5
-
51
-
-
0027159007
-
Solution structure of the cAMP-dependent protein kinase catalytic subunit and its contraction upon binding the protein kinase inhibitor peptide
-
Olah GA, Mitchell RD, Sosnick TR, Walsh DA, Trewhella J (1993) Solution structure of the cAMP-dependent protein kinase catalytic subunit and its contraction upon binding the protein kinase inhibitor peptide. Biochemistry 32: 3649-3657.
-
(1993)
Biochemistry
, vol.32
, pp. 3649-3657
-
-
Olah, G.A.1
Mitchell, R.D.2
Sosnick, T.R.3
Walsh, D.A.4
Trewhella, J.5
-
52
-
-
0032491190
-
Mapping Substrate-Induced Conformational Changes in cAMP-Dependent Protein Kinase by Protein Footprinting
-
Cheng X, Shaltiel S, Taylor SS (1998) Mapping Substrate-Induced Conformational Changes in cAMP-Dependent Protein Kinase by Protein Footprinting. Biochemistry 37: 14005-14013.
-
(1998)
Biochemistry
, vol.37
, pp. 14005-14013
-
-
Cheng, X.1
Shaltiel, S.2
Taylor, S.S.3
-
53
-
-
0042527480
-
Nucleotide-Induced Conformational Changes in the Saccharomyces cerevisiae SR Protein Kinase, Sky1p, Revealed by X-ray Crystallography
-
Nolen B, Ngo J, Chakrabarti S, Vu D, Adams JA, et al. (2003) Nucleotide-Induced Conformational Changes in the Saccharomyces cerevisiae SR Protein Kinase, Sky1p, Revealed by X-ray Crystallography. Biochemistry 42: 9575-9585.
-
(2003)
Biochemistry
, vol.42
, pp. 9575-9585
-
-
Nolen, B.1
Ngo, J.2
Chakrabarti, S.3
Vu, D.4
Adams, J.A.5
-
54
-
-
0031571091
-
A binary complex of the catalytic subunit of cAMP-dependent protein kinase and adenosine further defines conformational flexibility
-
Narayana N, Cox S, Xuong N-H, Eyck LFT, Taylor SS (1997) A binary complex of the catalytic subunit of cAMP-dependent protein kinase and adenosine further defines conformational flexibility. Structure 5: 921-935.
-
(1997)
Structure
, vol.5
, pp. 921-935
-
-
Narayana, N.1
Cox, S.2
Xuong, N.-H.3
Eyck, L.F.T.4
Taylor, S.S.5
-
55
-
-
2442717698
-
Communication Pathways between the Nucleotide Pocket and Distal Regulatory Sites in Protein Kinases
-
Wong L, Jennings PA, Adams JA (2004) Communication Pathways between the Nucleotide Pocket and Distal Regulatory Sites in Protein Kinases. Acc Chem Res 37: 304-311.
-
(2004)
Acc Chem Res
, vol.37
, pp. 304-311
-
-
Wong, L.1
Jennings, P.A.2
Adams, J.A.3
-
56
-
-
0037436388
-
-
Akamine P, Madhusudan, Wu J, Xuong N-H, Eyck LFT, et al. (2003) Dynamic Features of cAMP-dependent Protein Kinase Revealed by Apoenzyme Crystal Structure. J Mol Biol 327: 159-171.
-
Akamine P, Madhusudan, Wu J, Xuong N-H, Eyck LFT, et al. (2003) Dynamic Features of cAMP-dependent Protein Kinase Revealed by Apoenzyme Crystal Structure. J Mol Biol 327: 159-171.
-
-
-
-
57
-
-
23644452511
-
Did Protein Kinase Regulatory Mechanisms Evolve Through Elaboration of a Simple Structural Component?
-
Kannan N, Neuwald AF (2005) Did Protein Kinase Regulatory Mechanisms Evolve Through Elaboration of a Simple Structural Component? J Mol Biol 351: 956-972.
-
(2005)
J Mol Biol
, vol.351
, pp. 956-972
-
-
Kannan, N.1
Neuwald, A.F.2
-
58
-
-
0036306530
-
Evidence for an Internal Entropy Contribution to Phosphoryl Transfer: A Study of Domain Closure, Backbone Flexibility, and the Catalytic Cycle of cAMP-Dependent Protein Kinase
-
Li F, Gangal M, Juliano C, Gorfain E, Taylor SS, et al. (2002) Evidence for an Internal Entropy Contribution to Phosphoryl Transfer: A Study of Domain Closure, Backbone Flexibility, and the Catalytic Cycle of cAMP-Dependent Protein Kinase. J Mol Biol 315: 459-469.
-
(2002)
J Mol Biol
, vol.315
, pp. 459-469
-
-
Li, F.1
Gangal, M.2
Juliano, C.3
Gorfain, E.4
Taylor, S.S.5
-
59
-
-
0028331080
-
-
Madhusudan, Trafny EA, Xuong N-H, Adams JA, Eyck LFT, et al. (1994) cAMP-dependent protein kinase: Crystallographic insights into substrate recognition and phosphotransfer. Protein Sci 3: 176-187.
-
Madhusudan, Trafny EA, Xuong N-H, Adams JA, Eyck LFT, et al. (1994) cAMP-dependent protein kinase: Crystallographic insights into substrate recognition and phosphotransfer. Protein Sci 3: 176-187.
-
-
-
-
60
-
-
0033582946
-
Coevolving Protein Residues: Maximum Likelihood Identification and Relationship to Structure
-
Pollock DD, Taylor WR, Goldman N (1999) Coevolving Protein Residues: Maximum Likelihood Identification and Relationship to Structure. J Mol Biol 287: 187-198.
-
(1999)
J Mol Biol
, vol.287
, pp. 187-198
-
-
Pollock, D.D.1
Taylor, W.R.2
Goldman, N.3
-
61
-
-
2942580743
-
An Evolutionarily Conserved Network of Amino Acids Mediates Gating in Voltage-dependent Potassium Channels
-
Fleishman SJ, Yifrach O, Ben-Tal N (2004) An Evolutionarily Conserved Network of Amino Acids Mediates Gating in Voltage-dependent Potassium Channels. J Mol Biol 340: 307-318.
-
(2004)
J Mol Biol
, vol.340
, pp. 307-318
-
-
Fleishman, S.J.1
Yifrach, O.2
Ben-Tal, N.3
-
62
-
-
33744457709
-
A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses
-
Fares MA, Travers SAA (2006) A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses. Genetics 173: 9-23.
-
(2006)
Genetics
, vol.173
, pp. 9-23
-
-
Fares, M.A.1
Travers, S.A.A.2
-
63
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
64
-
-
0346494946
-
HOMSTRAD: Recent developments of the Homologous Protein Structure Alignment Database
-
Stebbings LA, Mizuguchi K (2004) HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. Nucleic Acids Res 32: D203-D207.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Stebbings, L.A.1
Mizuguchi, K.2
-
65
-
-
3543089710
-
A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments
-
Dekker JP, Fodor A, Aldrich RW, Yellen G (2004) A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments. Bioinformatics 20: 1565-1572.
-
(2004)
Bioinformatics
, vol.20
, pp. 1565-1572
-
-
Dekker, J.P.1
Fodor, A.2
Aldrich, R.W.3
Yellen, G.4
-
66
-
-
0242490780
-
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
67
-
-
0015243774
-
Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551
-
McLachlan AD (1971) Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551. J Mol Biol 61: 409-424.
-
(1971)
J Mol Biol
, vol.61
, pp. 409-424
-
-
McLachlan, A.D.1
|