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Volumn 21, Issue 22, 2005, Pages 4116-4124

Using information theory to search for co-evolving residues in proteins

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN DERIVATIVE; TRIOSEPHOSPHATE ISOMERASE;

EID: 27944458910     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti671     Document Type: Article
Times cited : (217)

References (18)
  • 1
    • 0004280469 scopus 로고
    • Interscience Publishers, John Wiley and Sons, New York
    • Ash,R. (1965) Information Theory. Interscience Publishers, John Wiley and Sons, New York.
    • (1965) Information Theory
    • Ash, R.1
  • 2
    • 0033977832 scopus 로고    scopus 로고
    • Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis
    • Atchley,W.R. et al. (2000) Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis. Mol. Biol. Evol., 17, 164-178.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 164-178
    • Atchley, W.R.1
  • 4
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Alex,B. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
    • (2004) Nucleic Acids Res. , vol.32
    • Alex, B.1
  • 5
    • 0028832687 scopus 로고
    • Covariation of residues in the homeodomain sequence family
    • Clarke,N.D. (1995) Covariation of residues in the homeodomain sequence family. Protein Sci., 4, 2269-2278.
    • (1995) Protein Sci. , vol.4 , pp. 2269-2278
    • Clarke, N.D.1
  • 6
    • 0036780779 scopus 로고    scopus 로고
    • Cline,M.S. et al. (2002) Proteins, 49, 7-14.
    • (2002) Proteins , vol.49 , pp. 7-14
    • Cline, M.S.1
  • 8
    • 18544362952 scopus 로고    scopus 로고
    • Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions
    • Gloor,G.B. et al. (2005) Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions. Biochemistry, 44, 7156-7165.
    • (2005) Biochemistry , vol.44 , pp. 7156-7165
    • Gloor, G.B.1
  • 9
    • 0027297096 scopus 로고
    • Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: An information theoretic analysis
    • Korber,B.T. et al. (1993) Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: An information theoretic analysis. Proc. Natl Acad. Sci. USA, 90, 7176-7180.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7176-7180
    • Korber, B.T.1
  • 10
    • 13444262384 scopus 로고    scopus 로고
    • CDD: A Conserved Domain Database for protein classification
    • Marchler-Bauer,A. et al. (2005) CDD: A Conserved Domain Database for protein classification. Nucleic Acids Res., 33, D192-D196.
    • (2005) Nucleic Acids Res. , vol.33
    • Marchler-Bauer, A.1
  • 11
    • 0025882523 scopus 로고
    • The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes
    • Noble,M.E. et al. (1991) The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes. Proteins, 10, 50-69.
    • (1991) Proteins , vol.10 , pp. 50-69
    • Noble, M.E.1
  • 12
    • 0037020282 scopus 로고    scopus 로고
    • Correlated mutation analyses on very large sequence families
    • Oliveira,L. et al. (2002) Correlated mutation analyses on very large sequence families. ChemBioChem, 3, 1010-1017.
    • (2002) Chem.Bio. Chem. , vol.3 , pp. 1010-1017
    • Oliveira, L.1
  • 13
    • 21044438202 scopus 로고    scopus 로고
    • The rate of compensatory mutation in the DNA bacteriophage X174
    • Poon,A. and Chao,L. (2005) The rate of compensatory mutation in the DNA bacteriophage X174. Genetics, 170, 989-999.
    • (2005) Genetics , vol.170 , pp. 989-999
    • Poon, A.1    Chao, L.2
  • 14
    • 0034794239 scopus 로고    scopus 로고
    • Evaluation of a novel method for the identification of coevolving protein residues
    • Pritchard,L. et al. (2001) Evaluation of a novel method for the identification of coevolving protein residues. Protein Eng., 15, 549-555.
    • (2001) Protein Eng. , vol.15 , pp. 549-555
    • Pritchard, L.1
  • 15
    • 0036763251 scopus 로고    scopus 로고
    • Prediction of protein residue contacts with a PDB-derived likelihood matrix
    • Singer,M.S. et al. (2002) Prediction of protein residue contacts with a PDB-derived likelihood matrix. Protein Eng., 15, 721-725.
    • (2002) Protein Eng. , vol.15 , pp. 721-725
    • Singer, M.S.1
  • 16
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov,R.L. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1
  • 17
    • 0037433701 scopus 로고    scopus 로고
    • Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
    • Tillier,E.R.M. and Lui,T.W.H. (2003) Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments. Bioinformatics, 19, 750-755.
    • (2003) Bioinformatics , vol.19 , pp. 750-755
    • Tillier, E.R.M.1    Lui, T.W.H.2
  • 18
    • 0034724418 scopus 로고    scopus 로고
    • Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap
    • Wollenberg,K.R. and Atchley,W.R. (2000) Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. Proc. Natl Acad. Sci. USA, 97, 3288-3291.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 3288-3291
    • Wollenberg, K.R.1    Atchley, W.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.