Mapping substrate-induced conformational changes in cAMP-dependent protein kinase by protein footprinting

Biochemistry

Volumn 37, Issue 40, 1998, Pages 14005-14013

  Cheng, Xiaodong ^a   Shaltiel, Shmuel ^b   Taylor, Susan S ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP DEPENDENT PROTEIN KINASE;

AMINO ACID SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; DNA FOOTPRINTING; ENZYME ACTIVE SITE; ENZYME CONFORMATION; EPITOPE MAPPING; NONHUMAN; PRIORITY JOURNAL; STRUCTURE ACTIVITY RELATION;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CATALYTIC DOMAIN; CYCLIC AMP-DEPENDENT PROTEIN KINASES; EDETIC ACID; ENZYME INHIBITORS; FERRIC COMPOUNDS; HYDROLYSIS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE MAPPING; PROTEIN BINDING; PROTEIN CONFORMATION; SUBSTRATE SPECIFICITY;

EID: 0032491190     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981057p     Document Type: Article

References (50)

1. Hanks, S. K., Quinn, A. M., and Hunter, T. (1988) Science 241, 42-52.
2. Taylor, S. S., Buechler, J. A., and Knighton, D. (1990) in Peptides and Protein Phosphorylation (Kemp, B. E., Ed.) pp 1-41, CRC Press, Boca Raton, FL.
3. Beebe, S. J., and Corbin, J. D. (1986) in The Enzymes: Control by Phosphorylation, Part A (Krebs, E. G., and Boyer, P. D., Eds.) Vol. XVII, pp 43-111, Academic Press, Inc., New York.
4. Taylor, S. S., Buechler, J. A., and Yonemoto, W. (1990) Annu. Rev. Biochem. 59, 971-1005.
5. Knighton, D. R., Zheng, J., Ten Eyck, L. F., Ashford, V. A., Xuong, N.-h., Taylor, S. S., and Sowadski, J. M. (1991) Science 253, 407-414.
6. Taylor S. S., Knighton, D. R., Zheng, J., Ten Eyck, L. F., and Sowadski, J. M. (1992) Annu. Rev. Cell Biol. 8, 429-462.
7. Taylor, S. S., and Radzio-Andzelm, E. (1994) Structure 2, 345-355.
8. Zheng, J., Knighton, D. R., Ten Eyck, L. F., Karlsson, R., Xuong, N.-h., Taylor, S. S., and Sowadski, J. M. (1993) Biochemistry 32, 2154-2161.
9. Knighton, D. R., Zheng, J., Ten Eyck, L. F., Xuong, N.-h., Taylor, S. S., and Sowadski, J. M. (1991) Science 253, 414-420.
10. De Bondt, H. L., Rosenblatt, J., Jancarik, J., Jones, H. D., Morgan, D. O., and Kim, S. H. (1993) Nature 363, 595-602.
11. Jeffrey P. D., Russo, A. A., Polyak, K., Gibbs, E., Hurwitz, J., Massague, J., and Pavletich, N. P. (1995) Nature 376, 313-320.
12. Zhang, F., Strand, A., Robbins, D., Cobb, M. H., and Goldsmith, E. J. (1994) Nature 367, 704-711.
13. Wilson, K. P., Fitzgibbon, M. J., Caron, P. R., Griffith, J. P., Chen, W., McCaffrey, P. G., Chambers, S. P., and Su, M. S.-S. (1996) J. Biol. Chem. 271, 27696-27700.
14. Wang, Z., Harkins, P., Ulevitch, R., Han, J., Cobb, M. H., and Goldsmith, E. J. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 2327-2332.
15. Xu, W., Harrison, S. C., and Eck, M. J. (1997) Nature 385, 595-602.
16. Canagarajah, B. J., Khokhlatchev, A., Cobb, M. H., and Goldsmith, E. J. (1997) Cell 90, 859-869.
17. Shoji, S., Titani, K., Demaille, J. G., and Fisher, E. G. (1979) J. Biol. Chem. 254, 6211-6214.
18. Grant, B. D., and Adams J. A. (1996) Biochemistry 35, 2022-2029.
19. Lew, J., Coruh, N., Tsigelny, I., Garrod, S., and Taylor, S. S. (1996) J. Biol. Chem. 272, 1507-1513.
20. Knighton, D. R., Bell, S. M., Zheng, J., Ten Eyck, L. F., Xuong, N.-h., Taylor, S. S., and Sowadski, J. M. (1993) Acta Crystallogr. D49, 357-361.
21. Zheng, J., Knighton, D. R., Xuong, N.-h., Taylor, S. S., Sowadski, J. M., and Ten Eyck, L. F. (1993) Protein Sci. 2, 1559-1573.
22. Karlsson, R., Zheng, J., Xuong, N.-h., Taylor, S. S., and Sowadski, J. M. (1993) Acta Crystallogr. D49, 381-388.
23. Bossemeyer, D., Engh, R. A., Kinzel, V., Ponstingl, H., and Huber, R. (1993) EMBO J. 12, 849-859.
24. Heyduk, E., and Heyduk, T. (1994) Biochemistry 33, 9643-9650.
25. Hanai, R., and Wang, J. C. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 11904-11908.
26. Zhong, M., Lin, L., and Kallenbach, N. R. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 2111-2115.
27. Jensen, T. H., Leffers, H., and Kjems, J. (1995) J. Biol. Chem. 270, 13777-13784.
28. Hon, R., Pyo, S., and Carey, M. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 6094-6051.
29. Greiner, D. P., Hughes, K. A., Gunasekera, A. H., and Meares, C. F. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 71-75.
30. Heyduk, T., Heyduk, E., Severinov, K., Tang, H., and Ebright, R. H. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 10162-10166.
31. Baichoo, N., and Heyduk, T. (1997) Biochemistry 36, 10830-10836.
32. Slice, L. W., and Taylor, S. S. (1989) J. Biol. Chem. 264, 20940-20946.
33. Herberg, F. W., Bell, S. M., and Taylor, S. S. (1993) Protein Eng. 6, 771-777.
34. Richardson, J. M., Howard, P., Massa, J. S., and Maurer, R. A. (1990) J. Biol. Chem. 265, 13635-13640.
35. Chestukhin, A., Litovchick, L., Batkin, M., and Shaltiel, S. (1996) FEBS Lett. 383, 265-270.
36. Schagger, H., and Von Jagow, G. (1987) Anal. Biochem. 166, 138-379.
37. Jue, R. A., and Doolittle, R. F. (1985) Biochemistry 24, 162-170.
38. Brenowitz, M., Senear, D., Shea, M. A., and Ackers, G. K. (1986) Methods Enzymol. 30, 133-181.
39. Grant, B. D., Hemmer, W., Tsigelny, I., Adams, J. A., and Taylor, S. S. (1998) Biochemistry 37, 7708-7715.
40. Narayana, N., Cox, S., Xuong, N.-h., Ten Eyck, L. F., and Taylor, S. S. (1997) Structure 5, 921-935.
41. Chestukhin, A., Litovochick, L., Schourov, D., Cox, S., Taylor, S. S., and Shaltiel, S. (1996) J. Biol. Chem. 271, 10175-10182.
42. Buechler, J. A., Vedvick, T. A., and Taylor, S. S. (1989) Biochemistry 28, 3018-3024.
43. Buechler, J. A., and Taylor, S. S. (1990) Biochemistry 29, 1937-1943.
44. Nelson, N. C., and Taylor, S. S. (1981) J. Biol. Chem. 256, 3743-3750.
45. Jiménez, J. S., Kupfer, A., Gani, V., and Shaltiel, S. (1982) Biochemistry 21, 1623-1630.
46. Shaltiel, S., Cox, S., and Taylor, S. S. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 484-491.
47. Bossemeyer, D. (1994) Trends Biochem. Sci. 19, 201-205.
48. Whitehouse, S., and Walsh, D. A. (1983) J. Biol. Chem. 258, 3682-3692.
49. Whitehouse, S., Feramisco, J. R., Casnellie, J. E., Krebs, E. G., and Walsh, D. A. (1983) J. Biol. Chem. 258, 3693-3701.
50. Herberg, F. W., and Taylor, S. S. (1993) Biochemistry 32, 14025-14022.