-
1
-
-
0025832114
-
Inferring consensus structure from nucleic acid sequences
-
Chiu,D.K. and Kolodziejczak,T. (1991) Inferring consensus structure from nucleic acid sequences. Comput. Appl. Biosci., 7, 347-52.
-
(1991)
Comput. Appl. Biosci
, vol.7
, pp. 347-352
-
-
Chiu, D.K.1
Kolodziejczak, T.2
-
3
-
-
0032420333
-
JPred: A consensus secondary structure prediction server
-
Cuff,J.A. et al. (1998) JPred: A consensus secondary structure prediction server. Bioinformatics, 14, 892-3.
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
-
4
-
-
33744457709
-
A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses
-
Fares,M.A. and Travers,S.A. (2006) A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses. Genetics, 173, 9-23.
-
(2006)
Genetics
, vol.173
, pp. 9-23
-
-
Fares, M.A.1
Travers, S.A.2
-
5
-
-
0035700864
-
-
Fariselli,P. et al. (2001) Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations. Proteins, S5, 157-162.
-
Fariselli,P. et al. (2001) Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations. Proteins, S5, 157-162.
-
-
-
-
6
-
-
0014860857
-
An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
-
Fitch,W.M. and Markowitz,E. (1970) An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. Biochem. Genet., 4, 579-593.
-
(1970)
Biochem. Genet
, vol.4
, pp. 579-593
-
-
Fitch, W.M.1
Markowitz, E.2
-
7
-
-
3042842115
-
Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
-
Fodor,A.A. and Aldrich,R.W. (2004a) Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. Proteins, 56, 211-221.
-
(2004)
Proteins
, vol.56
, pp. 211-221
-
-
Fodor, A.A.1
Aldrich, R.W.2
-
8
-
-
2442498470
-
On evolutionary conservation of thermodynamic coupling in proteins
-
Fodor,A.A. and Aldrich,R.W. (2004b) On evolutionary conservation of thermodynamic coupling in proteins. J. Biol. Chem., 279, 19046-19050.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 19046-19050
-
-
Fodor, A.A.1
Aldrich, R.W.2
-
9
-
-
18544362952
-
Information in protein multiple sequenced alignments reveals two classes of coevolving positions
-
Gloor,G. et al. (2005) Information in protein multiple sequenced alignments reveals two classes of coevolving positions. Biochemistry 44, 7156-7165.
-
(2005)
Biochemistry
, vol.44
, pp. 7156-7165
-
-
Gloor, G.1
-
10
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Gobel,U. et al. (1994) Correlated mutations and residue contacts in proteins. Proteins, 18, 309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Gobel, U.1
-
11
-
-
33646541982
-
High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase
-
Jenkins,J.L. and Tanner,J.J. (2006) High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase. Acta Crystallogr. D Biol. Crystallogr., 62, 290-301.
-
(2006)
Acta Crystallogr. D Biol. Crystallogr
, vol.62
, pp. 290-301
-
-
Jenkins, J.L.1
Tanner, J.J.2
-
12
-
-
0036721218
-
Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations
-
Kass,I. and Horovitz,A. (2002) Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations. Proteins 48, 611-617.
-
(2002)
Proteins
, vol.48
, pp. 611-617
-
-
Kass, I.1
Horovitz, A.2
-
13
-
-
0027297096
-
Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: An information theoretic analysis
-
Korber,B.T. et al. (1993) Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: An information theoretic analysis. Proc. Natl Acad. Sci. USA, 90, 7176-80.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 7176-7180
-
-
Korber, B.T.1
-
14
-
-
0034721944
-
Analysis of covariation in an SH3 domain sequence alignment: Applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions
-
Larson,S.M. et al. (2000) Analysis of covariation in an SH3 domain sequence alignment: Applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. J. Mol. Biol. 303, 433-446.
-
(2000)
J. Mol. Biol
, vol.303
, pp. 433-446
-
-
Larson, S.M.1
-
15
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless,S.W. and Ranganathan,R. (1999) Evolutionarily conserved pathways of energetic connectivity in protein families. Science, 286, 295-299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
16
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
Martin,L.C. et al. (2005) Using information theory to search for co-evolving residues in proteins. Bioinformatics, 21, 4116-4124.
-
(2005)
Bioinformatics
, vol.21
, pp. 4116-4124
-
-
Martin, L.C.1
-
17
-
-
0025882523
-
The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes
-
Noble,M.E. et al. (1991) The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes. Proteins, 10, 5069.
-
(1991)
Proteins
, vol.10
, pp. 5069
-
-
Noble, M.E.1
-
18
-
-
0033550256
-
Effective use of sequence correlation and conservation in fold recognition
-
Olmea,O. et al. (1999) Effective use of sequence correlation and conservation in fold recognition. J. Mol. Biol., 293, 1221-1239.
-
(1999)
J. Mol. Biol
, vol.293
, pp. 1221-1239
-
-
Olmea, O.1
-
19
-
-
21044438202
-
The rate of compensatory mutation in the DNA bacteriophage ΦX174
-
Poon,A. and Chao,L. (2005) The rate of compensatory mutation in the DNA bacteriophage ΦX174. Genetics., 170, 989-999.
-
(2005)
Genetics
, vol.170
, pp. 989-999
-
-
Poon, A.1
Chao, L.2
-
20
-
-
0037433701
-
Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
-
Tilher,E.R. and Lui,T.W. (2003) Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments. Bioinformatics, 19, 750-755.
-
(2003)
Bioinformatics
, vol.19
, pp. 750-755
-
-
Tilher, E.R.1
Lui, T.W.2
-
21
-
-
0030627407
-
Recovery of protein structure from contact maps
-
Vendruscolo,M. et al. (1997) Recovery of protein structure from contact maps. Fold. Des., 2, 295-306.
-
(1997)
Fold. Des
, vol.2
, pp. 295-306
-
-
Vendruscolo, M.1
-
22
-
-
0033628817
-
Protein folding using contact maps
-
Vendruscolo,M. and Domany,E. (2000) Protein folding using contact maps. Vitam. Horm., 58, 171-212.
-
(2000)
Vitam. Horm
, vol.58
, pp. 171-212
-
-
Vendruscolo, M.1
Domany, E.2
-
23
-
-
0034724418
-
Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap
-
Wollenberg,K.R. and Atchley,W.R. (2000) Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. Proc. Natl Acad. Sci. USA, 97, 3288-3291.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 3288-3291
-
-
Wollenberg, K.R.1
Atchley, W.R.2
-
24
-
-
6644223187
-
Protein Structure Relationships Revealed by Mutational Analysis
-
Yanofsky,C. et al. (1964) Protein Structure Relationships Revealed by Mutational Analysis. Science, 146, 1593-1594.
-
(1964)
Science
, vol.146
, pp. 1593-1594
-
-
Yanofsky, C.1
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