-
1
-
-
33747245684
-
Mass spectrometry-based study of the plasma proteome in a mouse intestinal tumor model
-
Hung K.E., Kho A.T., Sarracino D., Richard L.G., Krastins B., Forrester S., Haab B.B., Kohane I.S., and Kucherlapati R. Mass spectrometry-based study of the plasma proteome in a mouse intestinal tumor model. J. Proteome. Res. 5 8 (2006) 1866-1878
-
(2006)
J. Proteome. Res.
, vol.5
, Issue.8
, pp. 1866-1878
-
-
Hung, K.E.1
Kho, A.T.2
Sarracino, D.3
Richard, L.G.4
Krastins, B.5
Forrester, S.6
Haab, B.B.7
Kohane, I.S.8
Kucherlapati, R.9
-
2
-
-
34249717879
-
A high-quality catalog of the Drosophila melanogaster proteome
-
Brunner E., Ahrens C.H., Mohanty S., Baetschmann H., Loevenich S., Potthast F., Deutsch E.W., Panse C., de Lichtenberg U., Rinner O., Lee H., Pedrioli P.G., Malmstrom J., Koehler K., Schrimpf S., Krijgsveld J., Kregenow F., Heck A.J., Hafen E., Schlapback R., and Aebersold R. A high-quality catalog of the Drosophila melanogaster proteome. Nat. Biotech. 25 5 (2007) 576-583
-
(2007)
Nat. Biotech.
, vol.25
, Issue.5
, pp. 576-583
-
-
Brunner, E.1
Ahrens, C.H.2
Mohanty, S.3
Baetschmann, H.4
Loevenich, S.5
Potthast, F.6
Deutsch, E.W.7
Panse, C.8
de Lichtenberg, U.9
Rinner, O.10
Lee, H.11
Pedrioli, P.G.12
Malmstrom, J.13
Koehler, K.14
Schrimpf, S.15
Krijgsveld, J.16
Kregenow, F.17
Heck, A.J.18
Hafen, E.19
Schlapback, R.20
Aebersold, R.21
more..
-
3
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong S.-E., and Mann M. Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1 5 (2005) 252-262
-
(2005)
Nat. Chem. Biol.
, vol.1
, Issue.5
, pp. 252-262
-
-
Ong, S.-E.1
Mann, M.2
-
4
-
-
33748567134
-
Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes
-
Roe M.R., and Griffin T.J. Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes. Proteomics 6 (2006) 4678-4687
-
(2006)
Proteomics
, vol.6
, pp. 4678-4687
-
-
Roe, M.R.1
Griffin, T.J.2
-
5
-
-
0001115415
-
A general approach to calculating isotope abundance ratios in mass spectrometry
-
Hugentobler E., and Jöliger J. A general approach to calculating isotope abundance ratios in mass spectrometry. J. Chem. Edu. 49 9 (1972) 610-612
-
(1972)
J. Chem. Edu.
, vol.49
, Issue.9
, pp. 610-612
-
-
Hugentobler, E.1
Jöliger, J.2
-
6
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-assisted affinity tags
-
Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., and Aebersold R. Quantitative analysis of complex protein mixtures using isotope-assisted affinity tags. Nat. Biotech. 17 (1999) 994-999
-
(1999)
Nat. Biotech.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
7
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., Khainovski N., Pillae S., Dey S., Daniels S., Purkayastha S., Juhasz P., Marter S., Brtlet-Jones M., He F., Jacobson A., and Pappin D.J. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell Proteomics 3 (2004) 1154-1169
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillae, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Marter, S.13
Brtlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
8
-
-
0035384687
-
18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
-
18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus. Anal. Chem. 73 13 (2001) 2836-2842
-
(2001)
Anal. Chem.
, vol.73
, Issue.13
, pp. 2836-2842
-
-
Yao, X.1
Freas, A.2
Ramirez, J.3
Demirev, P.A.4
Fenslau, C.5
-
9
-
-
33846105280
-
18O-labeling strategies for quantitative proteomics
-
18O-labeling strategies for quantitative proteomics. Mass Spectrom. Rev. 26 1 (2007) 121-136
-
(2007)
Mass Spectrom. Rev.
, vol.26
, Issue.1
, pp. 121-136
-
-
Miyagi, M.1
Rao, K.C.2
-
10
-
-
16344389629
-
Metabolic labeling of proteins for proteomics
-
Beynon R.J., and Pratt J.M. Metabolic labeling of proteins for proteomics. Mol. Cell Proteomics 4 (2005) 857-872
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 857-872
-
-
Beynon, R.J.1
Pratt, J.M.2
-
11
-
-
0036535357
-
Analysis of quantitative proteomic data generated via multidimensional protein identification technology
-
Washburn M.P., Ulaszek R., Deciu C., Schieltz D.M., and Yates III J.R. Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal. Chem. 74 7 (2002) 1650-1657
-
(2002)
Anal. Chem.
, vol.74
, Issue.7
, pp. 1650-1657
-
-
Washburn, M.P.1
Ulaszek, R.2
Deciu, C.3
Schieltz, D.M.4
Yates III, J.R.5
-
12
-
-
0041706161
-
Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics
-
Krijgsveld J., Ketting R.F., Mahmoudi T., Johansen J., Artal-Sanz M., Verrijzer C.P., Plasterk R.H., and Heck A.J. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat. Biotechnol. 21 8 (2003) 927-931
-
(2003)
Nat. Biotechnol.
, vol.21
, Issue.8
, pp. 927-931
-
-
Krijgsveld, J.1
Ketting, R.F.2
Mahmoudi, T.3
Johansen, J.4
Artal-Sanz, M.5
Verrijzer, C.P.6
Plasterk, R.H.7
Heck, A.J.8
-
13
-
-
4444346217
-
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomics analysis
-
Wu C.C., MacCoss M.J., Howell K.E., Matthews D.E., and Yates III J.R. Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomics analysis. Anal. Chem. 76 17 (2004) 4951-4959
-
(2004)
Anal. Chem.
, vol.76
, Issue.17
, pp. 4951-4959
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Matthews, D.E.4
Yates III, J.R.5
-
14
-
-
0942265386
-
15N-isotope labelling of plants: Using the greenhouse for structural proteomics
-
15N-isotope labelling of plants: Using the greenhouse for structural proteomics. Proteomics 4 1 (2004) 226-234
-
(2004)
Proteomics
, vol.4
, Issue.1
, pp. 226-234
-
-
Ippel, J.H.1
Pouvreau, L.2
Kroef, T.3
Gruppen, H.4
Versteeg, G.5
van den Putten, P.6
Struik, P.C.7
van Mierlo, C.P.8
-
16
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong S.-E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., and Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 1 (2002) 376-386
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.-E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
17
-
-
0036665484
-
Quantitative analysis of the yeast proteome by incorporation of isotopically labeled leucine
-
Jiang H., and English A.M. Quantitative analysis of the yeast proteome by incorporation of isotopically labeled leucine. J. Proteome. Res. 1 (2002) 345-350
-
(2002)
J. Proteome. Res.
, vol.1
, pp. 345-350
-
-
Jiang, H.1
English, A.M.2
-
18
-
-
0036428393
-
Amino acid residue specific stable isotope labeling for quantitative proteomics
-
Zhu H., Pan S., Gu S., Bradbury E.M., and Chen X. Amino acid residue specific stable isotope labeling for quantitative proteomics. Rapid Commun. Mass Spectrom. 16 (2002) 2115-2123
-
(2002)
Rapid Commun. Mass Spectrom.
, vol.16
, pp. 2115-2123
-
-
Zhu, H.1
Pan, S.2
Gu, S.3
Bradbury, E.M.4
Chen, X.5
-
19
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann M. Functional and quantitative proteomics using SILAC. Nat. Rev. Mol. Cell Biol. 7 12 (2006) 952-958
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, Issue.12
, pp. 952-958
-
-
Mann, M.1
-
21
-
-
3242747629
-
Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics
-
Whitelegge J.P., Katz J.E., Pihakari K.A., Hale R., Aguilera R., Gomez S.M., Faull K.F., Vavilin D., and Vermaas W. Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics. Phytochemistry 65 11 (2004) 1507-1515
-
(2004)
Phytochemistry
, vol.65
, Issue.11
, pp. 1507-1515
-
-
Whitelegge, J.P.1
Katz, J.E.2
Pihakari, K.A.3
Hale, R.4
Aguilera, R.5
Gomez, S.M.6
Faull, K.F.7
Vavilin, D.8
Vermaas, W.9
-
22
-
-
34249650777
-
Comparison of full versus partial metabolic labeling for quantitative proteomic analysis in Arabidopsis thaliana
-
Huttlin E.L., Hegeman A.D., Harms A.C., and Sussman M.R. Comparison of full versus partial metabolic labeling for quantitative proteomic analysis in Arabidopsis thaliana. Mol. Cell Proteomics 6 5 (2007) 860-881
-
(2007)
Mol. Cell Proteomics
, vol.6
, Issue.5
, pp. 860-881
-
-
Huttlin, E.L.1
Hegeman, A.D.2
Harms, A.C.3
Sussman, M.R.4
-
23
-
-
0026448766
-
Mass isotopomer distribution analysis: A technique for measuring biosynthesis and turnover of polymers
-
Hellerstein M.K., and Neese R.A. Mass isotopomer distribution analysis: A technique for measuring biosynthesis and turnover of polymers. Am. J. Physiol. 263 Endocrinol. Metab. 26 (1992) E988-E1001
-
(1992)
Am. J. Physiol.
, vol.263
, Issue.Endocrinol. Metab. 26
-
-
Hellerstein, M.K.1
Neese, R.A.2
-
24
-
-
0033038503
-
Mass isotopomer distribution analysis at eight years: Theoretical, analytic, and experimental considerations
-
Hellerstein M.K., and Neese R.A. Mass isotopomer distribution analysis at eight years: Theoretical, analytic, and experimental considerations. Am. J. Physiol. 276 Endocrinol. Metab. 39 (1999) E1146-E1170
-
(1999)
Am. J. Physiol.
, vol.276
, Issue.Endocrinol. Metab. 39
-
-
Hellerstein, M.K.1
Neese, R.A.2
-
25
-
-
0035499083
-
Fractionation of isotopically labeled peptides in quantitative proteomics
-
Zhang R., Sioma C.S., Wang S., and Regnier F.E. Fractionation of isotopically labeled peptides in quantitative proteomics. Anal. Chem. 73 21 (2001) 5142-5149
-
(2001)
Anal. Chem.
, vol.73
, Issue.21
, pp. 5142-5149
-
-
Zhang, R.1
Sioma, C.S.2
Wang, S.3
Regnier, F.E.4
-
26
-
-
0242569349
-
A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture
-
Ibarrola N., Kalume D.E., Gronborg M., Iwahori A., and Pandey A. A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture. Anal. Chem. 75 22 (2003) 6043-6049
-
(2003)
Anal. Chem.
, vol.75
, Issue.22
, pp. 6043-6049
-
-
Ibarrola, N.1
Kalume, D.E.2
Gronborg, M.3
Iwahori, A.4
Pandey, A.5
-
27
-
-
33747592823
-
Graded regulation of the Kv2.1 potassium channel by variable phosphorylation
-
Park K.-S., Mohapatra D.P., Misonou H., and Trimmer J.S. Graded regulation of the Kv2.1 potassium channel by variable phosphorylation. Science 313 (2006) 976-979
-
(2006)
Science
, vol.313
, pp. 976-979
-
-
Park, K.-S.1
Mohapatra, D.P.2
Misonou, H.3
Trimmer, J.S.4
-
28
-
-
0033822017
-
Single amino acid (arginine) deprivation: Rapid and selective death of cultured transformed and malignant cells
-
Scott L., Lamb J., Smith S., and Wheatley D.N. Single amino acid (arginine) deprivation: Rapid and selective death of cultured transformed and malignant cells. Br. J. Cancer 83 6 (2000) 800-810
-
(2000)
Br. J. Cancer
, vol.83
, Issue.6
, pp. 800-810
-
-
Scott, L.1
Lamb, J.2
Smith, S.3
Wheatley, D.N.4
-
29
-
-
0012351964
-
13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)
-
13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). J. Proteome Res. 2 2 (2003) 173-181
-
(2003)
J. Proteome Res.
, vol.2
, Issue.2
, pp. 173-181
-
-
Ong, S.-E.1
Kratchmarova, I.2
Mann, M.3
-
30
-
-
34247396011
-
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
-
Ong S.-E., and Mann M. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat. Protoc. 1 6 (2006) 2650-2660
-
(2006)
Nat. Protoc.
, vol.1
, Issue.6
, pp. 2650-2660
-
-
Ong, S.-E.1
Mann, M.2
-
32
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
Blagoev B., Ong S.-E., Kratchmarova I., and Mann M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 22 (2004) 1139-1145
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.-E.2
Kratchmarova, I.3
Mann, M.4
-
33
-
-
40449138174
-
Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry
-
Smith R.D., Pasa-Tolic L., Lipton M.S., Jensen P.K., Anderson G.A., Shen Y., Conrads T.P., Udseth H.R., Harkewicz R., Belov M.E., Masselon C., and Veenstra T.D. Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry. Electrophoresis 22 (2001) 1652-1668
-
(2001)
Electrophoresis
, vol.22
, pp. 1652-1668
-
-
Smith, R.D.1
Pasa-Tolic, L.2
Lipton, M.S.3
Jensen, P.K.4
Anderson, G.A.5
Shen, Y.6
Conrads, T.P.7
Udseth, H.R.8
Harkewicz, R.9
Belov, M.E.10
Masselon, C.11
Veenstra, T.D.12
-
34
-
-
0035326232
-
15N-metabolic labeling
-
15N-metabolic labeling. Anal. Chem. 73 9 (2001) 2132-2139
-
(2001)
Anal. Chem.
, vol.73
, Issue.9
, pp. 2132-2139
-
-
Conrads, T.P.1
Alving, K.2
Veenstra, T.D.3
Belov, M.E.4
Anderson, G.A.5
Anderson, D.J.6
Lipton, M.S.7
Pasa-Tolic, L.8
Udseth, H.R.9
Chrisler, W.B.10
Thrall, B.D.11
Smith, R.D.12
-
35
-
-
0036253914
-
An accurate mass tag strategy for quantitative and high-throughput proteome measurements
-
Smith R.D., Anderson G.A., Lipton M.S., Pasa-Tolic L., Shen Y., Conrads T.P., Veenstra T.D., and Udseth H.R. An accurate mass tag strategy for quantitative and high-throughput proteome measurements. Proteomics 2 (2002) 513-523
-
(2002)
Proteomics
, vol.2
, pp. 513-523
-
-
Smith, R.D.1
Anderson, G.A.2
Lipton, M.S.3
Pasa-Tolic, L.4
Shen, Y.5
Conrads, T.P.6
Veenstra, T.D.7
Udseth, H.R.8
-
39
-
-
33947409609
-
15N-metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells
-
15N-metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells. Proteomics 7 5 (2007) 750-754
-
(2007)
Proteomics
, vol.7
, Issue.5
, pp. 750-754
-
-
Lanquar, V.1
Kuhn, L.2
Lelievre, F.3
Khafif, M.4
Espagne, C.5
Bruley, C.6
Barbier-Brygoo, H.7
Garin, J.8
Thomine, S.9
-
40
-
-
34548739008
-
Stable isotope assisted assignment of elemental compositions for metabolomic
-
Hegeman A.D., Schulte C.F., Cui Q., Lewis I.A., Huttlin E.L., Eghbalnia H., Ulrich E.L., Harms A.C., Markley J.L., and Sussman M.R. Stable isotope assisted assignment of elemental compositions for metabolomic. Anal. Chem. 79 (2007) 6912-6921
-
(2007)
Anal. Chem.
, vol.79
, pp. 6912-6921
-
-
Hegeman, A.D.1
Schulte, C.F.2
Cui, Q.3
Lewis, I.A.4
Huttlin, E.L.5
Eghbalnia, H.6
Ulrich, E.L.7
Harms, A.C.8
Markley, J.L.9
Sussman, M.R.10
-
41
-
-
28644448658
-
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry
-
Gruhler A., Schulze W.X., Matthiesen R., Mann M., and Jensen O.N. Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry. Mol. Cell Proteomics 4 11 (2005) 1697-1709
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.11
, pp. 1697-1709
-
-
Gruhler, A.1
Schulze, W.X.2
Matthiesen, R.3
Mann, M.4
Jensen, O.N.5
-
42
-
-
30744432140
-
Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway
-
Cantin G.T., Venable J.D., Cociorva D., and Yates III J.R. Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway. J. Proteome Res. 5 1 (2006) 127-134
-
(2006)
J. Proteome Res.
, vol.5
, Issue.1
, pp. 127-134
-
-
Cantin, G.T.1
Venable, J.D.2
Cociorva, D.3
Yates III, J.R.4
-
43
-
-
0035983403
-
15N-metabolic labeling/mass spectrometry for comparative proteomics and rapid identification of protein markers/targets
-
15N-metabolic labeling/mass spectrometry for comparative proteomics and rapid identification of protein markers/targets. Rapid Commun. Mass Spectrom. 16 (2002) 1389-1397
-
(2002)
Rapid Commun. Mass Spectrom.
, vol.16
, pp. 1389-1397
-
-
Wang, Y.K.1
Ma, Z.2
Quinn, D.F.3
Fu, E.W.4
-
44
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier F.W. Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 41 1 (2005) 207-234
-
(2005)
Protein Expr. Purif.
, vol.41
, Issue.1
, pp. 207-234
-
-
Studier, F.W.1
-
45
-
-
84988163667
-
15N-labeled soybean seeds produced for use in human and animal nutrition studies: Description of a recirculating hydroponic growth system and whole plant nutrient and environmental requirements
-
15N-labeled soybean seeds produced for use in human and animal nutrition studies: Description of a recirculating hydroponic growth system and whole plant nutrient and environmental requirements. J. Sci. Food Agric. 64 2 (1994) 223-230
-
(1994)
J. Sci. Food Agric.
, vol.64
, Issue.2
, pp. 223-230
-
-
Grusak, M.A.1
Pezeshgi, S.2
-
46
-
-
33751340274
-
Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics
-
Hendrickson E.L., Xia Q., Wang T., Leigh J.A., and Hackett M. Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. Analyst 131 12 (2006) 1335-1341
-
(2006)
Analyst
, vol.131
, Issue.12
, pp. 1335-1341
-
-
Hendrickson, E.L.1
Xia, Q.2
Wang, T.3
Leigh, J.A.4
Hackett, M.5
-
47
-
-
33847369414
-
Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol
-
Li L., Li Q., Rohlin L., Kim U., Salmon K., Rejtar T., Gunsalus R.P., Karger B.L., and Ferry J.G. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. J. Proteome Res. 6 2 (2007) 759-771
-
(2007)
J. Proteome Res.
, vol.6
, Issue.2
, pp. 759-771
-
-
Li, L.1
Li, Q.2
Rohlin, L.3
Kim, U.4
Salmon, K.5
Rejtar, T.6
Gunsalus, R.P.7
Karger, B.L.8
Ferry, J.G.9
-
48
-
-
3142671580
-
Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition
-
Nirmalan N., Sims P.F., and Hyde J.E. Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition. Mol. Microbiol. 52 (2004) 1187-1199
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 1187-1199
-
-
Nirmalan, N.1
Sims, P.F.2
Hyde, J.E.3
-
49
-
-
34247365096
-
Relative quantification of stable isotope labeled peptides using a linear ion trap-orbitrap hybrid mass spectrometer
-
Venable J.D., Wohlschlegel J., McClatchy D.B., Park S.K., and Yates III J.R. Relative quantification of stable isotope labeled peptides using a linear ion trap-orbitrap hybrid mass spectrometer. Anal. Chem. 79 8 (2007) 3056-3064
-
(2007)
Anal. Chem.
, vol.79
, Issue.8
, pp. 3056-3064
-
-
Venable, J.D.1
Wohlschlegel, J.2
McClatchy, D.B.3
Park, S.K.4
Yates III, J.R.5
-
50
-
-
0035886986
-
Peptide mass mapping constrained with stable isotope-tagged peptides for identification of protein mixtures
-
Hunter T.C., Yang L., Zhu H., Majidi V., Bradbury E.M., and Chen X. Peptide mass mapping constrained with stable isotope-tagged peptides for identification of protein mixtures. Anal. Chem. 73 (2001) 4891-4902
-
(2001)
Anal. Chem.
, vol.73
, pp. 4891-4902
-
-
Hunter, T.C.1
Yang, L.2
Zhu, H.3
Majidi, V.4
Bradbury, E.M.5
Chen, X.6
-
51
-
-
33645062395
-
Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis
-
Snijders A.P., Walther J., Peter S., Kinnman I., de Vos M.G., van de Werken H.J., Brouns S.J., van der Oost J., and Wright P.C. Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis. Proteomics 6 5 (2006) 1518-1529
-
(2006)
Proteomics
, vol.6
, Issue.5
, pp. 1518-1529
-
-
Snijders, A.P.1
Walther, J.2
Peter, S.3
Kinnman, I.4
de Vos, M.G.5
van de Werken, H.J.6
Brouns, S.J.7
van der Oost, J.8
Wright, P.C.9
-
52
-
-
34547110110
-
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis
-
Epub ahead of print
-
Benschop J.J., Mohammed S., O'Flaherty M., Heck A.J.R., Slijper M., and Menke F.L.H. Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol. Cell Proteomics Feb. 21 (2007) Epub ahead of print
-
(2007)
Mol. Cell Proteomics Feb.
, vol.21
-
-
Benschop, J.J.1
Mohammed, S.2
O'Flaherty, M.3
Heck, A.J.R.4
Slijper, M.5
Menke, F.L.H.6
-
53
-
-
0038607022
-
Protein abundance quantification in embryonic stem cells using incomplete metabolic labelling with 15N amino acids, matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, and analysis of relative isotopologue abundances of peptides
-
Vogt J.A., Schroer K., Holzer K., Hunzinger C., Klemm M., Biefang-Arndt K., Schillo S., Cahill M.A., Schrattenholz A., Matthies H., and Stegmann W. Protein abundance quantification in embryonic stem cells using incomplete metabolic labelling with 15N amino acids, matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, and analysis of relative isotopologue abundances of peptides. Rapid Commun. Mass Spectrom. 17 (2003) 1273-1282
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, pp. 1273-1282
-
-
Vogt, J.A.1
Schroer, K.2
Holzer, K.3
Hunzinger, C.4
Klemm, M.5
Biefang-Arndt, K.6
Schillo, S.7
Cahill, M.A.8
Schrattenholz, A.9
Matthies, H.10
Stegmann, W.11
-
54
-
-
1642314524
-
A novel proteomic screen for peptide-protein interactions
-
Schulze W.X., and Mann M. A novel proteomic screen for peptide-protein interactions. J. Biol. Chem. 279 11 (2004) 10756-10764
-
(2004)
J. Biol. Chem.
, vol.279
, Issue.11
, pp. 10756-10764
-
-
Schulze, W.X.1
Mann, M.2
-
55
-
-
11944274520
-
Nucleolar proteome dynamics
-
Andersen J.S., Lam Y.W., Leung A.K., Ong S.E., Lyon C.E., Lamond A.I., and Mann M. Nucleolar proteome dynamics. Nature 433 (2005) 77-83
-
(2005)
Nature
, vol.433
, pp. 77-83
-
-
Andersen, J.S.1
Lam, Y.W.2
Leung, A.K.3
Ong, S.E.4
Lyon, C.E.5
Lamond, A.I.6
Mann, M.7
-
56
-
-
0036787711
-
High-throughput global peptide proteomic analysis by combining stable isotope amino acid labeling and data-dependent multiplexed-MS/MS
-
Berger S.J., Lee S.W., Anderson G.A., Pasa-Tolic L., Tolic N., Shen Y., Zhao R., and Smith R.D. High-throughput global peptide proteomic analysis by combining stable isotope amino acid labeling and data-dependent multiplexed-MS/MS. Anal. Chem. 74 (2002) 4994-5000
-
(2002)
Anal. Chem.
, vol.74
, pp. 4994-5000
-
-
Berger, S.J.1
Lee, S.W.2
Anderson, G.A.3
Pasa-Tolic, L.4
Tolic, N.5
Shen, Y.6
Zhao, R.7
Smith, R.D.8
-
57
-
-
4043141477
-
Quantitative cancer proteomics: Stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research
-
Everley P.A., Krijgsveld J., Zetter B.R., and Gygi S.P. Quantitative cancer proteomics: Stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research. Mol. Cell Proteomics 3 (2004) 729-735
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 729-735
-
-
Everley, P.A.1
Krijgsveld, J.2
Zetter, B.R.3
Gygi, S.P.4
-
58
-
-
0038407748
-
A novel medium for expression of proteins selectively labeled with 15N-amino acids in Spodoptera frugiperda (Sf9) insect cells
-
Bruggert M., Rehm T., Shanker S., Georgescu J., and Holak T.A. A novel medium for expression of proteins selectively labeled with 15N-amino acids in Spodoptera frugiperda (Sf9) insect cells. J. Biomol. NMR 25 4 (2006) 335-348
-
(2006)
J. Biomol. NMR
, vol.25
, Issue.4
, pp. 335-348
-
-
Bruggert, M.1
Rehm, T.2
Shanker, S.3
Georgescu, J.4
Holak, T.A.5
-
59
-
-
22844436250
-
Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
-
Ishihama Y., Sato T., Tabata T., Miyamoto N., Sagane K., Nagasu T., and Oda Y. Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nat. Biotechnol. 23 5 (2005) 617-621
-
(2005)
Nat. Biotechnol.
, vol.23
, Issue.5
, pp. 617-621
-
-
Ishihama, Y.1
Sato, T.2
Tabata, T.3
Miyamoto, N.4
Sagane, K.5
Nagasu, T.6
Oda, Y.7
-
60
-
-
33846638822
-
Relative quantification of proteins across the species boundary through the use of shared peptides
-
Snijders A.P., de Koning B., and Wright P.C. Relative quantification of proteins across the species boundary through the use of shared peptides. J. Proteome Res. 6 1 (2007) 97-104
-
(2007)
J. Proteome Res.
, vol.6
, Issue.1
, pp. 97-104
-
-
Snijders, A.P.1
de Koning, B.2
Wright, P.C.3
-
61
-
-
33745539414
-
Protein turnover on the scale of the proteome
-
Doherty M.K., and Beynon R.J. Protein turnover on the scale of the proteome. Expert Rev. Proteomics 3 1 (2006) 97-110
-
(2006)
Expert Rev. Proteomics
, vol.3
, Issue.1
, pp. 97-110
-
-
Doherty, M.K.1
Beynon, R.J.2
-
62
-
-
29144431588
-
Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics
-
Snijders A.P., de Koning B., and Wright P.C. Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics. J. Proteome Res. 4 6 (2005) 2185-2191
-
(2005)
J. Proteome Res.
, vol.4
, Issue.6
, pp. 2185-2191
-
-
Snijders, A.P.1
de Koning, B.2
Wright, P.C.3
-
63
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt J.M., Petty J., Riba-Garcia I., Robertson D.H.L., Gaskell S.J., Oliver S.G., and Beynon R.J. Dynamics of protein turnover, a missing dimension in proteomics. Mol. Cell Proteomics 1 (2002) 579-591
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.L.4
Gaskell, S.J.5
Oliver, S.G.6
Beynon, R.J.7
-
64
-
-
84987385158
-
Approaches to the improvement of quantitative precision in selected ion monitoring: High resolution applications
-
Thorne G.C., Gaskell S.J., and Payne P.A. Approaches to the improvement of quantitative precision in selected ion monitoring: High resolution applications. Biomed. Mass Spectrom. 11 (1984) 415-420
-
(1984)
Biomed. Mass Spectrom.
, vol.11
, pp. 415-420
-
-
Thorne, G.C.1
Gaskell, S.J.2
Payne, P.A.3
-
65
-
-
0346122950
-
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data
-
MacCoss M.J., Wu C.C., Liu H., Sadygov R., and Yates III J.R. A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 75 24 (2003) 6912-6921
-
(2003)
Anal. Chem.
, vol.75
, Issue.24
, pp. 6912-6921
-
-
MacCoss, M.J.1
Wu, C.C.2
Liu, H.3
Sadygov, R.4
Yates III, J.R.5
-
66
-
-
33749046638
-
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics
-
Pan C., Kora G., Tabb D.L., Pelletier D.A., McDonald W.H., Hurst G.B., Hettich R.L., and Samatova N.F. Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal. Chem. 78 20 (2006) 7110-7120
-
(2006)
Anal. Chem.
, vol.78
, Issue.20
, pp. 7110-7120
-
-
Pan, C.1
Kora, G.2
Tabb, D.L.3
Pelletier, D.A.4
McDonald, W.H.5
Hurst, G.B.6
Hettich, R.L.7
Samatova, N.F.8
-
67
-
-
33749062913
-
ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
-
Pan C., Kora G., McDonald W.H., Tabb D.L., VerBerkmoes N.C., Hurst G.B., Pelletier D.A., Samatova N.F., and Hettich R.L. ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal. Chem. 78 20 (2006) 7121-7131
-
(2006)
Anal. Chem.
, vol.78
, Issue.20
, pp. 7121-7131
-
-
Pan, C.1
Kora, G.2
McDonald, W.H.3
Tabb, D.L.4
VerBerkmoes, N.C.5
Hurst, G.B.6
Pelletier, D.A.7
Samatova, N.F.8
Hettich, R.L.9
-
69
-
-
32444436985
-
Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry
-
Du Y., Parks B.A., Sohn S., Kwast K.E., and Kelleher N.L. Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry. Anal. Chem. 78 3 (2006) 686-694
-
(2006)
Anal. Chem.
, vol.78
, Issue.3
, pp. 686-694
-
-
Du, Y.1
Parks, B.A.2
Sohn, S.3
Kwast, K.E.4
Kelleher, N.L.5
-
70
-
-
28544433959
-
Measurement of the isotope enrichment of stable isotope-labeled proteins using high resolution mass spectra of peptides
-
MacCoss M.J., Wu C.C., Matthews D.E., and Yates III J.R. Measurement of the isotope enrichment of stable isotope-labeled proteins using high resolution mass spectra of peptides. Anal. Chem. 77 23 (2005) 7646-7653
-
(2005)
Anal. Chem.
, vol.77
, Issue.23
, pp. 7646-7653
-
-
MacCoss, M.J.1
Wu, C.C.2
Matthews, D.E.3
Yates III, J.R.4
-
72
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins D.N., Pappin D.J., Creasy D.M., and Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999) 3551-3567
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
73
-
-
15944422816
-
Double standards in quantitative proteomics: Direct comparative assessment of difference in gel electrophoresis and metabolic stable isotope labeling
-
Kolkman A., Dirksen E.H., Slijper M., and Heck A.J. Double standards in quantitative proteomics: Direct comparative assessment of difference in gel electrophoresis and metabolic stable isotope labeling. Mol. Cell Proteomics 4 3 (2005) 255-266
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.3
, pp. 255-266
-
-
Kolkman, A.1
Dirksen, E.H.2
Slijper, M.3
Heck, A.J.4
-
74
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
-
Zybailov B., Mosley A.L., Sardiu M.E., Coleman M.K., Florens L., and Washburn M.P. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J. Proteome Res. 5 (2006) 2339-2347
-
(2006)
J. Proteome Res.
, vol.5
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
-
75
-
-
0347361590
-
Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover
-
Cargile B.J., Bundy J.L., Grunden A.M., and Stephenson J.L. Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover. Anal. Chem. 76 1 (2004) 86-97
-
(2004)
Anal. Chem.
, vol.76
, Issue.1
, pp. 86-97
-
-
Cargile, B.J.1
Bundy, J.L.2
Grunden, A.M.3
Stephenson, J.L.4
-
76
-
-
13844317869
-
Proteome dynamics in complex organisms: Using stable isotopes to monitor individual protein turnover rates
-
Doherty M.K., Whitehead C., McCormack H., Gaskell S.J., and Beynon R.J. Proteome dynamics in complex organisms: Using stable isotopes to monitor individual protein turnover rates. Proteomics 5 (2005) 522-533
-
(2005)
Proteomics
, vol.5
, pp. 522-533
-
-
Doherty, M.K.1
Whitehead, C.2
McCormack, H.3
Gaskell, S.J.4
Beynon, R.J.5
-
77
-
-
25844518423
-
A proteomic method for the analysis of changes in protein concentrations in response to systemic perturbations using metabolic incorporation of stable isotopes and mass spectrometry
-
Gustavsson N., Greber B., Kreitler T., Himmelbauer H., Lehrach H., and Gobom J. A proteomic method for the analysis of changes in protein concentrations in response to systemic perturbations using metabolic incorporation of stable isotopes and mass spectrometry. Proteomics 5 (2005) 3563-3570
-
(2005)
Proteomics
, vol.5
, pp. 3563-3570
-
-
Gustavsson, N.1
Greber, B.2
Kreitler, T.3
Himmelbauer, H.4
Lehrach, H.5
Gobom, J.6
-
78
-
-
0036652968
-
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate
-
Gronborg M., Kristiansen T.Z., Stensballe A., Andersen J.S., Ohara O., Mann M., Jensen O.N., and Pandey A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate. Mol. Cell Proteomics 1 7 (2002) 517-527
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.7
, pp. 517-527
-
-
Gronborg, M.1
Kristiansen, T.Z.2
Stensballe, A.3
Andersen, J.S.4
Ohara, O.5
Mann, M.6
Jensen, O.N.7
Pandey, A.8
-
79
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro S.B., McCleland M.L., Stukenberg P.T., Burke D.J., Ross M.M., Shabanowitz J., Hunt D.F., and White F.M. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20 3 (2002) 301-305
-
(2002)
Nat. Biotechnol.
, vol.20
, Issue.3
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
|