Nucleolar proteome dynamics

Nature

Volumn 433, Issue 7021, 2005, Pages 77-83

  Andersen, Jens S ^a   Lam, Yun W ^a   Leung, Anthony K L ^a,c   Ong, Shao En ^a   Lyon, Carol E ^b   Lamond, Angus I ^b   Mann, Matthias ^b  

^a Dept of Biochem and Molec Biology ^*  (Denmark)

^b UNIVERSITY OF DUNDEE   (United Kingdom)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; CELL CULTURE; FLUORESCENCE; GENES; GENETIC ENGINEERING; GROWTH KINETICS; IMAGING SYSTEMS; MASS SPECTROMETRY; METABOLISM; RNA;

CELL CYCLES; CELL GROWTH; GENE CLUSTERS; NUCLEOLAR MORPHOLOGY;

PROTEINS;

DNA DIRECTED RNA POLYMERASE; NUCLEAR PROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN;

GENETICS;

ARTICLE; CELL GROWTH; CELL ORGANELLE; CONTROLLED STUDY; FLUORESCENCE ANALYSIS; HUMAN; HUMAN CELL; ISOTOPE LABELING; MASS SPECTROMETRY; METABOLIC INHIBITION; NUCLEOLUS; PRIORITY JOURNAL; PROTEIN QUATERNARY STRUCTURE; PROTEOMICS; QUANTITATIVE ANALYSIS; RIBOSOME SUBUNIT;

AMINO ACID SEQUENCE; CELL NUCLEOLUS; CELL SURVIVAL; DACTINOMYCIN; HELA CELLS; HUMANS; KINETICS; MASS SPECTROMETRY; NUCLEAR PROTEINS; PROTEOME; PROTEOMICS; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

EID: 11944274520     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature03207     Document Type: Article

References (30)

1. Visintin, R. & Amon, A, The nucleolus: the magician's hat for cell cycle tricks. Curr. Opin. Cell Biol. 12, 752 (2000).
2. Guarente, L. Link between aging and the nucleolus. Genes Dev. 11, 2449-2455 (1997).
3. Sherr, C. J. & Weber, J. D. The ARF/p53 pathway. Curr. Opin. Genet. Dev. 10, 94-99 (2000).
4. Olson, M. O. Sensing cellular stress: another new function for the nucleolus? Sci. STKE [online] pe10 (2004) (doi:10.1126/stke.2242004pe10).
5. Aebersold, R. & Mann, M. Mass spectrometry-based proteomics. Nature 422, 198-207 (2003).
6. Mauramatsu, M., Smetana, K. & Busch, H. Quantitative aspects of isolation of nucleoli of the Walker carcinosarcoma and liver of the rat. Cancer Res. 25, 693-697 (1963).
7. Huh, W. K. et al. Global analysis of protein localization in budding yeast. Nature 425, 686-691 (2003).
8. Andersen, J. S. et al. Directed proteomic analysis of the human nucleolus. Curr. Biol. 12, 1-11 (2002).
9. Trinkle-Mulcahy, L., Sleeman, I. E. & Lamond, A. I. Dynamic targeting of protein phosphatase 1 within the nuclei of living mammalian cells. J. Cell Sci. 114, 4219-4228 (2001).
10. Li, D., Meier, U. T., Dobrowolska, G. & Krebs, E. G. Specific interaction between casein kinase 2 and the nucleolar protein Nopp140. J. Biol. Chem. 272, 3773-3779 (1997).
11. Yamamoto, R. T., Nogi, Y., Dodd, I. A. & Nomura, M. RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template. EMBO J. 15, 3964-3973 (1996).
12. Charroux, B. et al. Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli. J. Cell Biol. 148, 1177-1186 (2000).
13. Lamond, A. I. & Earnshaw, W. C. Structure and function in the nucleus. Science 280, 547-553 (1998).
14. Misteli, T. Protein dynamics: implications for nuclear architecture and gene expression. Science 291, 843-847 (2001).
15. Lamond, A. I. & Sleeman, J. E. Nuclear substructure and dynamics. Curr. Biol. 13, R825-R828 (2003).
16. Leung, A. K. & Lamond, A. I. In vivo analysis of NHPX reveals a novel nucleolar localization pathway involving a transient accumulation in splicing speckles. J. Cell Biol. 157, 615-629 (2002).
17. Ong, S. E. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
18. Blagoev, B., Ong, S. E., Kratchmarova, I. & Mann, M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nature Biotechnol. 22, 1139-1145 (2004).
19. Perry, R. P. & Kelley, D. E. Inhibition of RNA synthesis by actinomycin D: characteristic dose-response of different RNA species. J. Cell Physiol. 76, 127-139 (1970).
20. Raghavan, A. et al. Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res. 30, 5529-5538 (2002).
21. Tschochner, H. & Hurt, E. Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol. 13, 255-263 (2003).
22. Dragon, F. et al. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417, 967-970 (2002).
23. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA 95, 14863-14868 (1998).
24. Tamm, I., Hand, R. & Caliguiri, L. A. Action of dichlorobenzimidazole riboside on RNA synthesis in L-929 and HeLa cells. J. Cell Biol. 69, 229-240 (1976).
25. Mattsson, K., Pokrovskaja, K., Kiss, C., Klein, G. & Szekely, L. Proteins associated with the promyelocytic leukemia gene product (PML)-containing nuclear body move to the nucleolus upon inhibition of proteasome-dependent protein degradation. Proc. Natl Acad. Sci. USA 98, 1012-1017 (2001).
26. Olsen, J. V., Ong, S. E. & Mann, M. Trypsin cleaves exclusively C-terminal to Arginine and lysine residues. Mol. Cell. Proteomics 6, 608-614 (2004).
27. Leung, A. K. et al. Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells. J. Cell Biol. 166, 787-800 (2004).
28. Masson, C. et al. Conditions favoring RNA polymerase 1 transcription in permeabilized cells. Exp. Cell Res. 226, 114-125 (1996).
29. Boisvert, F. M., Hendzel, M. J. & Bazett-Jones, D. P. Promyelocytic leukemia (PML) nuclear bodies are protein structures that do not accumulate RNA. J. Cell Biol. 148, 283-292 (2000).
30. Scherl, A. et al. Functional proteomic analysis of human nucleolus. Mol. Biol. Cell 13, 4100-4109 (2002).