Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics

Analytical Chemistry

Volumn 78, Issue 20, 2006, Pages 7110-7120

  Pan, Chongle ^a   Kora, Guruprasad ^a   Tabb, David L ^a,b   Pelletier, Dale A ^a   McDonald, W Hayes ^a   Hurst, Gregory B ^a   Hettich, Robert L ^a   Samatova, Nagiza F ^a  

^a OAK RIDGE NATIONAL LABORATORY   (United States)

^b VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ION CHROMATOGRAMS; SHOTGUN PROTEOMICS; STATISTICAL INFERENCES;

ALGORITHMS; ISOTOPES; MASS SPECTROMETRY; POLYPEPTIDES; SIGNAL TO NOISE RATIO; STATISTICAL METHODS;

PROTEINS;

PEPTIDE;

ALGORITHM; ARTICLE; COVARIANCE; ION PAIR CHROMATOGRAPHY; MEASUREMENT; PEPTIDE ABUNDANCE RATIO; PEPTIDE ANALYSIS; PRINCIPAL COORDINATE ANALYSIS; PROTEOMICS; QUANTITATIVE ASSAY; QUANTITATIVE SHOTGUN PROTEOMICS; RELIABILITY; SCORING SYSTEM; SIGNAL DETECTION; SIGNAL NOISE RATIO; TANDEM MASS SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; BIAS (EPIDEMIOLOGY); CHROMATOGRAPHY; HOT TEMPERATURE; IONS; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEOMICS; REPRODUCIBILITY OF RESULTS; RHODOPSEUDOMONAS; TANDEM MASS SPECTROMETRY;

EID: 33749046638     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0606554     Document Type: Article

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