-
1
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee,R.C. and Ambros,V. (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science, 294, 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
2
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau,N.C., Lim,L.P., Weinstein,E.G. and Bartel,D.P. (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science, 294, 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
3
-
-
0035966319
-
microRNAs: Tiny regulators with great potential
-
Ambros,V. (2001) microRNAs: Tiny regulators with great potential. Cell, 107, 823-826.
-
(2001)
Cell
, vol.107
, pp. 823-826
-
-
Ambros, V.1
-
4
-
-
0344232733
-
microRNAs: Runts of the genome assert themselves
-
Lai,E.C. (2003) microRNAs: Runts of the genome assert themselves. Curr. Biol., 13, R925-R936.
-
(2003)
Curr. Biol
, vol.13
-
-
Lai, E.C.1
-
5
-
-
0034597777
-
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
-
Pasquinelli,A.E., Reinhart,B.J., Slack,F., Martindale,M.Q., Kuroda,M.I., Maller,B., Hayward,D.C., Ball,E.E., Degnan,B., Müller,P. et al. (2000) Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature, 408, 86-89.
-
(2000)
Nature
, vol.408
, pp. 86-89
-
-
Pasquinelli, A.E.1
Reinhart, B.J.2
Slack, F.3
Martindale, M.Q.4
Kuroda, M.I.5
Maller, B.6
Hayward, D.C.7
Ball, E.E.8
Degnan, B.9
Müller, P.10
-
6
-
-
0037009364
-
MicroRNA maturation: Stepwise processing and subcellular localization
-
Lee,Y., Jeon,K., Lee,J.-T., Kim,S. and Kim,V.N. (2002) MicroRNA maturation: Stepwise processing and subcellular localization. EMBO J. 21, 4663-4670.
-
(2002)
EMBO J
, vol.21
, pp. 4663-4670
-
-
Lee, Y.1
Jeon, K.2
Lee, J.-T.3
Kim, S.4
Kim, V.N.5
-
7
-
-
13944260434
-
Microarray proling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
-
Baskerville,S. and Bartel,D.P. (2005) Microarray proling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA, 11, 241-247.
-
(2005)
RNA
, vol.11
, pp. 241-247
-
-
Baskerville, S.1
Bartel, D.P.2
-
8
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim,L.P., Lau,N.C., Weinstein,E.G., Abdelhakim,A., Yekta,S., Rhoades,M.W., Burge,C.B. and Bartel,D.P. (2003) The microRNAs of Caenorhabditis elegans. Genes Dev., 17, 991-1008.
-
(2003)
Genes Dev
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
9
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
Lai,E.C., Tomancak,P., Williams,R.W. and Rubin,G.M. (2003) Computational identification of Drosophila microRNA genes. Genome Biol., 4 R42.
-
(2003)
Genome Biol
, vol.4
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
10
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez,A., Griffiths-Jones,S., Ashurst,J.L. and Bradley,A. (2004) Identification of mammalian microRNA host genes and transcription units. Genome Res., 14, 1902-1910.
-
(2004)
Genome Res
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
-
11
-
-
9344235449
-
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
-
Cai,X., Hagedorn,C.H. and Cullen,B.R. (2004) Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA, 10, 1957-1966.
-
(2004)
RNA
, vol.10
, pp. 1957-1966
-
-
Cai, X.1
Hagedorn, C.H.2
Cullen, B.R.3
-
12
-
-
19444367079
-
Mammalian microRNAs derived from genomic repeats
-
Smalheiser,N.R. and Torvik,V.I. (2005) Mammalian microRNAs derived from genomic repeats. Trends Genet., 21, 322-326.
-
(2005)
Trends Genet
, vol.21
, pp. 322-326
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
13
-
-
33845370280
-
RNA polymerase III transcribes human microRNAs
-
Borchert,G.M., Lanier,W. and Davidson,B.L. (2006) RNA polymerase III transcribes human microRNAs. Nat. Struct. Mol. Biol., 13, 1097-1101.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 1097-1101
-
-
Borchert, G.M.1
Lanier, W.2
Davidson, B.L.3
-
14
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee,Y., Kim,M., Han,J., Yeom,K.-H., Lee,S., Baek,S.H. and Kim,V.N. (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 23, 4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.-H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
15
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee,Y., Ahn,C., Han,J., Choi,H., Kim,J., Yim,J., Lee,J., Provost,P., Rådmark,O., Kim,S. et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature, 425, 415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Rådmark, O.9
Kim, S.10
-
16
-
-
10944254152
-
Transcription and processing of human microRNA precursors
-
Cullen,B.R. (2004) Transcription and processing of human microRNA precursors. Mol. Cell, 16, 861-865.
-
(2004)
Mol. Cell
, vol.16
, pp. 861-865
-
-
Cullen, B.R.1
-
17
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han,J., Lee,Y., Yeom,K.-H., Nam,J.-W., Heo,I., Rhee,J.-K., Sohn,S.Y., Cho,Y., Zhang,B.-T. and Kim,V.N. (2006) Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125, 887-901.
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.-H.3
Nam, J.-W.4
Heo, I.5
Rhee, J.-K.6
Sohn, S.Y.7
Cho, Y.8
Zhang, B.-T.9
Kim, V.N.10
-
18
-
-
4444230672
-
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5
-
Zeng,Y. and Cullen,B.R. (2004) Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Nucleic Acids Res., 32, 4776-4785.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4776-4785
-
-
Zeng, Y.1
Cullen, B.R.2
-
19
-
-
0347988235
-
Nuclear export of microRNA precursors
-
Lund,E., Güttinger,S., Calado,A., Dahlberg,J.E. and Kutay,U. (2004) Nuclear export of microRNA precursors. Science, 303, 95-98.
-
(2004)
Science
, vol.303
, pp. 95-98
-
-
Lund, E.1
Güttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
20
-
-
0037144546
-
A microRNA in a multiple-turnover RNAi enzyme complex
-
Hutvágner,G. and Zamore,P.D. (2002) A microRNA in a multiple-turnover RNAi enzyme complex. Science, 297, 2056-2060.
-
(2002)
Science
, vol.297
, pp. 2056-2060
-
-
Hutvágner, G.1
Zamore, P.D.2
-
21
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang,H., Kolb,F.A., Jaskiewicz,L., Westhof,E. and Filipowicz,W. (2004) Single processing center models for human Dicer and bacterial RNase III. Cell, 118, 57-68.
-
(2004)
Cell
, vol.118
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.A.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
-
22
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz,D.S., Hutvágner,G., Du,T., Xu,Z., Aronin,N. and Zamore,P.D. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115, 199-208.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvágner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
23
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova,A., Reynolds,A. and Jayasena,S.D. (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell, 115, 209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
24
-
-
4744357297
-
Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
-
Krol,J., Sobczak,K., Wilczynska,U., Drath,M., Jasinska,A., Kaczynska,D. and Krzyzosiak,W.J. (2004) Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J. Biol. Chem., 279, 42230-42239.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 42230-42239
-
-
Krol, J.1
Sobczak, K.2
Wilczynska, U.3
Drath, M.4
Jasinska, A.5
Kaczynska, D.6
Krzyzosiak, W.J.7
-
25
-
-
23844530681
-
Asymmetry of intronic pre-miRNA structures in functional RISC assembly
-
Lin,S.-L., Chang,D. and Ying,S.-Y. (2005) Asymmetry of intronic pre-miRNA structures in functional RISC assembly. Gene, 356, 32-38.
-
(2005)
Gene
, vol.356
, pp. 32-38
-
-
Lin, S.-L.1
Chang, D.2
Ying, S.-Y.3
-
26
-
-
33746382555
-
MicroRNA sequence motifs reveal asymmetry between the stem arms
-
Gorodkin,J., Havgaard,J.H., Ensterö,M., Sawera,M., Jensen,P., Ohman,M. and Fredholm,M. (2006) MicroRNA sequence motifs reveal asymmetry between the stem arms. Comput. Biol. Chem., 30, 249-254.
-
(2006)
Comput. Biol. Chem
, vol.30
, pp. 249-254
-
-
Gorodkin, J.1
Havgaard, J.H.2
Ensterö, M.3
Sawera, M.4
Jensen, P.5
Ohman, M.6
Fredholm, M.7
-
27
-
-
14844339653
-
Nuclear processing and export of microRNAs in Arabidopsis
-
Park,M.Y., Wu,G., Gonzalez-Sulser,A., Vaucheret,H. and Poethig,R.S. (2005) Nuclear processing and export of microRNAs in Arabidopsis. Proc. Natl Acad. Sci. USA, 102, 3691-3696.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 3691-3696
-
-
Park, M.Y.1
Wu, G.2
Gonzalez-Sulser, A.3
Vaucheret, H.4
Poethig, R.S.5
-
28
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel,D.P. (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
29
-
-
0037782493
-
MicroRNAs: At the root of plant development?
-
Bartel,B. and Bartel,D.P. (2003) MicroRNAs: At the root of plant development? Plant Physiol., 132, 709-717.
-
(2003)
Plant Physiol
, vol.132
, pp. 709-717
-
-
Bartel, B.1
Bartel, D.P.2
-
30
-
-
0037737975
-
MicroRNAs and other tiny endogenous RNAs in C. elegans
-
Ambros,V., Lee,R.C., Lavanway,A., Williams,P.T. and Jewell,D. (2003) MicroRNAs and other tiny endogenous RNAs in C. elegans. Curr. Biol. 13, 807-818.
-
(2003)
Curr. Biol
, vol.13
, pp. 807-818
-
-
Ambros, V.1
Lee, R.C.2
Lavanway, A.3
Williams, P.T.4
Jewell, D.5
-
31
-
-
3342969381
-
RNA editing of a miRNAprecursor
-
Luciano,D.J., Mirsky,H., Vendetti,N.J. and Maas,S. (2004) RNA editing of a miRNAprecursor. RNA, 10, 1174-1177.
-
(2004)
RNA
, vol.10
, pp. 1174-1177
-
-
Luciano, D.J.1
Mirsky, H.2
Vendetti, N.J.3
Maas, S.4
-
33
-
-
11444251652
-
New human and mouse microRNA genes found by homology search
-
Weber,M.J. (2005) New human and mouse microRNA genes found by homology search. FEBS J., 272, 59-73.
-
(2005)
FEBS J
, vol.272
, pp. 59-73
-
-
Weber, M.J.1
-
34
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby,J.G., Jan,C.H. and Bartel,D.P. (2007) Intronic microRNA precursors that bypass Drosha processing. Nature, 448, 83-86.
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
35
-
-
33846945735
-
Processing of intronic microRNAs
-
Kim,Y.-K. and Kim,V.N. (2007) Processing of intronic microRNAs. EMBO J., 26, 775-783.
-
(2007)
EMBO J
, vol.26
, pp. 775-783
-
-
Kim, Y.-K.1
Kim, V.N.2
-
36
-
-
0036544755
-
Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
-
Lai,E.C. (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat. Genet. 30, 363-364.
-
(2002)
Nat. Genet
, vol.30
, pp. 363-364
-
-
Lai, E.C.1
-
37
-
-
13444312098
-
Substrate requirements for let-7 function in the developing zebrafish embryo
-
Kloosterman,W.P., Wienholds,E., Ketting,R.F. and Plasterk,R.H.A. (2004) Substrate requirements for let-7 function in the developing zebrafish embryo. Nucleic Acids Res., 32, 6284-6291.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6284-6291
-
-
Kloosterman, W.P.1
Wienholds, E.2
Ketting, R.F.3
Plasterk, R.H.A.4
-
38
-
-
34547441263
-
Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR
-
Lytle,J.R., Yario,T.A. and Steitz,J.A. (2007) Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR. Proc. Natl Acad. Sci. USA, 104, 9667-9672.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 9667-9672
-
-
Lytle, J.R.1
Yario, T.A.2
Steitz, J.A.3
-
39
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim,L.P., Lau,N.C., Garrett-Engele,P., Grimson,A., Schelter,J.M., Castle,J., Bartel,D.P., Linsley,P.S. and Johnson,J.M. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature, 433, 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
40
-
-
28344440823
-
MicroRNA function: Multiple mechanisms for a tiny RNA?
-
Pillai,R.S. (2005) MicroRNA function: Multiple mechanisms for a tiny RNA? RNA, 11, 1753-1761.
-
(2005)
RNA
, vol.11
, pp. 1753-1761
-
-
Pillai, R.S.1
-
41
-
-
40349094597
-
MicroRNA-373 induces expression of genes with complementary promoter sequences
-
Place,R.F., Li,L.-C., Pookot,D., Noonan,E.J. and Dahiya,R. (2008) MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc. Natl Acad. Sci. USA, 105, 1608-1613.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 1608-1613
-
-
Place, R.F.1
Li, L.-C.2
Pookot, D.3
Noonan, E.J.4
Dahiya, R.5
-
42
-
-
36749026906
-
Switching from repression to activation: MicroRNAs can up-regulate translation
-
Vasudevan,S., Tong,Y. and Steitz,J.A. (2007) Switching from repression to activation: MicroRNAs can up-regulate translation. Science, 318, 1931-1934.
-
(2007)
Science
, vol.318
, pp. 1931-1934
-
-
Vasudevan, S.1
Tong, Y.2
Steitz, J.A.3
-
43
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart,B.J., Weinstein,E.G., Rhoades,M.W., Bartel,B. and Bartel,D.P. (2002) MicroRNAs in plants. Genes Dev., 16, 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
44
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades,M.W., Reinhart,B.J., Lim,L.P., Burge,C.B., Bartel,B. and Bartel,D.P. (2002) Prediction of plant microRNA targets. Cell, 110, 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
45
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar,R. and Zhu,J.-K. (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16, 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.-K.2
-
46
-
-
11244251011
-
Plant and animal microRNAs: Similarities and differences
-
Millar,A.A. and Waterhouse,P.M. (2005) Plant and animal microRNAs: similarities and differences. Funct. Integr. Genomics, 5, 129-135.
-
(2005)
Funct. Integr. Genomics
, vol.5
, pp. 129-135
-
-
Millar, A.A.1
Waterhouse, P.M.2
-
48
-
-
20844463414
-
Identification of microRNAs of the herpesvirus family
-
Pfeffer,S., Sewer,A., Lagos-Quintana,M., Sheridan,R., Sander,C., Grässer,F.A., vanDyk,L.F., Ho,C.K., Shuman,S., Chien,M. et al. (2005) Identification of microRNAs of the herpesvirus family. Nat. Methods, 2, 269-276.
-
(2005)
Nat. Methods
, vol.2
, pp. 269-276
-
-
Pfeffer, S.1
Sewer, A.2
Lagos-Quintana, M.3
Sheridan, R.4
Sander, C.5
Grässer, F.A.6
vanDyk, L.F.7
Ho, C.K.8
Shuman, S.9
Chien, M.10
-
49
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedländer,M.R., Chen,W., Adamidi,C., Maaskola,J., Einspanier,R., Knespel,S. and Rajewsky,N. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol., 26, 407-415.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 407-415
-
-
Friedländer, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
50
-
-
0038054470
-
Computational and experimental identification of C. elegans microRNAs
-
Grad,Y., Aach,J., Hayes,G.D., Reinhart,B.J., Church,G.M., Ruvkun,G. and Kim,J. (2003) Computational and experimental identification of C. elegans microRNAs. Mol. Cell, 11, 1253-1263.
-
(2003)
Mol. Cell
, vol.11
, pp. 1253-1263
-
-
Grad, Y.1
Aach, J.2
Hayes, G.D.3
Reinhart, B.J.4
Church, G.M.5
Ruvkun, G.6
Kim, J.7
-
51
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros,V., Bartel,B., Bartel,D.P., Burge,C.B., Carrington,J.C., Chen,X., Dreyfuss,G., Eddy,S.R., Griffiths-Jones,S., Marshall,M. et al. (2003) A uniform system for microRNA annotation. RNA, 9, 277-279.
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
Dreyfuss, G.7
Eddy, S.R.8
Griffiths-Jones, S.9
Marshall, M.10
-
52
-
-
0347906099
-
Towards a complete description of the microRNA complement of animal genomes
-
Brennecke,J. and Cohen,S.M. (2003) Towards a complete description of the microRNA complement of animal genomes. Genome Biol., 4, 228.
-
(2003)
Genome Biol
, vol.4
, pp. 228
-
-
Brennecke, J.1
Cohen, S.M.2
-
53
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
Bentwich,I., Avniel,A., Karov,Y., Aharonov,R., Gilad,S., Barad,O., Barzilai,A., Einat,P., Einav,U., Meiri,E. et al. (2005) Identification of hundreds of conserved and nonconserved human microRNAs. Nat. Genet., 37, 766-770.
-
(2005)
Nat. Genet
, vol.37
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
-
54
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov,E., Guryev,V., van deBelt,J., Wienholds,E., Plasterk,R.H.A. and Cuppen,E. (2005) Phylogenetic shadowing and computational identification of human microRNA genes. Cell, 120, 21-24.
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van deBelt, J.3
Wienholds, E.4
Plasterk, R.H.A.5
Cuppen, E.6
-
55
-
-
0842278323
-
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
-
Ohler,U., Yekta,S., Lim,L.P., Bartel,D.P. and Burge,C.B. (2004) Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification. RNA, 10, 1309-1322.
-
(2004)
RNA
, vol.10
, pp. 1309-1322
-
-
Ohler, U.1
Yekta, S.2
Lim, L.P.3
Bartel, D.P.4
Burge, C.B.5
-
56
-
-
0037423845
-
Vertebrate microRNA genes
-
Lim,L.P., Glasner,M.E., Yekta,S., Burge,C.B. and Bartel,D.P. (2003) Vertebrate microRNA genes. Science, 299, 1540.
-
(2003)
Science
, vol.299
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
57
-
-
38149071979
-
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
-
2007
-
Ruby,J.G., Stark,A., Johnston,W.K., Kellis,M., Bartel,D.P. and Lai,E.C. (2007) Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res., 17, 1850-1864.
-
(1850)
Genome Res
, vol.17
-
-
Ruby, J.G.1
Stark, A.2
Johnston, W.K.3
Kellis, M.4
Bartel, D.P.5
Lai, E.C.6
-
58
-
-
43649096475
-
Identification of novel Drosophila melanogaster MicroRNAs
-
Sandmann,T. and Cohen,S.M. (2007) Identification of novel Drosophila melanogaster MicroRNAs. PLoS ONE, 2, e1265.
-
(2007)
PLoS ONE
, vol.2
-
-
Sandmann, T.1
Cohen, S.M.2
-
59
-
-
34250744007
-
Computational RNomics of drosophilids
-
Rose,D., Hackermueller,J., Washietl,S., Reiche,K., Hertel,J., Findeiss,S., Stadler,P. and Prohaska,S. (2007) Computational RNomics of drosophilids. BMC Genomics, 8, 406.
-
(2007)
BMC Genomics
, vol.8
, pp. 406
-
-
Rose, D.1
Hackermueller, J.2
Washietl, S.3
Reiche, K.4
Hertel, J.5
Findeiss, S.6
Stadler, P.7
Prohaska, S.8
-
60
-
-
21844477027
-
Human microRNA prediction through a probabilistic co-learning model of sequence and structure
-
Nam,J.-W., Shin,K.-R., Han,J., Lee,Y., Kim,V.N. and Zhang,B.-T. (2005) Human microRNA prediction through a probabilistic co-learning model of sequence and structure. Nucleic Acids Res., 33, 3570-3581.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3570-3581
-
-
Nam, J.-W.1
Shin, K.-R.2
Han, J.3
Lee, Y.4
Kim, V.N.5
Zhang, B.-T.6
-
61
-
-
27844508214
-
Identification of clustered microRNAs using an ab initio prediction method
-
Sewer,A., Paul,N., Landgraf,P., Aravin,A., Pfeffer,S., Brownstein,M.J., Tuschl,T., vanNimwegen,E. and Zavolan,M. (2005) Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics, 6, 267.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 267
-
-
Sewer, A.1
Paul, N.2
Landgraf, P.3
Aravin, A.4
Pfeffer, S.5
Brownstein, M.J.6
Tuschl, T.7
vanNimwegen, E.8
Zavolan, M.9
-
62
-
-
30344447264
-
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
-
Xue,C., Li,F., He,T., Liu,G.-P., Li,Y. and Zhang,X. (2005) Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics, 6, 310.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 310
-
-
Xue, C.1
Li, F.2
He, T.3
Liu, G.-P.4
Li, Y.5
Zhang, X.6
-
63
-
-
33747871855
-
Hairpins in a haystack: Recognizing microRNA precursors in comparative genomics data
-
Hertel,J. and Stadler,P.F. (2006) Hairpins in a haystack: Recognizing microRNA precursors in comparative genomics data. Bioinformatics, 22, e197-e202.
-
(2006)
Bioinformatics
, vol.22
-
-
Hertel, J.1
Stadler, P.F.2
-
64
-
-
34447309058
-
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
-
Ng,K.L.S. and Mishra,S.K. (2007) De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics, 23, 1321-1330.
-
(2007)
Bioinformatics
, vol.23
, pp. 1321-1330
-
-
Ng, K.L.S.1
Mishra, S.K.2
-
65
-
-
38349097919
-
MiRFinder: An improved approach and software implementation for genome-wide fast microRNA precursor scans
-
Huang,T., Fan,B., Rothschild,M., Hu,Z., Li,K. and Zhao,S. (2007) MiRFinder: An improved approach and software implementation for genome-wide fast microRNA precursor scans. BMC Bioinformatics, 8, 341.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 341
-
-
Huang, T.1
Fan, B.2
Rothschild, M.3
Hu, Z.4
Li, K.5
Zhao, S.6
-
66
-
-
41549152081
-
Mammalian MicroRNA prediction through a support vector machine model of sequence and structure
-
Sheng,Y., Engström,P.G. and Lenhard,B. (2007) Mammalian MicroRNA prediction through a support vector machine model of sequence and structure. PLoS ONE, 2, e946.
-
(2007)
PLoS ONE
, vol.2
-
-
Sheng, Y.1
Engström, P.G.2
Lenhard, B.3
-
67
-
-
33846650507
-
Reliable prediction of Drosha processing sites improves microRNA gene prediction
-
Helvik,S.A., Snøve,O. and Saetrom,P. (2007) Reliable prediction of Drosha processing sites improves microRNA gene prediction. Bioinformatics, 23, 142-149.
-
(2007)
Bioinformatics
, vol.23
, pp. 142-149
-
-
Helvik, S.A.1
Snøve, O.2
Saetrom, P.3
-
68
-
-
34547596338
-
MiPred: Classification of real and pseudo microRNA precursors using random forest prediction model with combined features
-
Jiang,P., Wu,H., Wang,W., Ma,W., Sun,X. and Lu,Z. (2007) MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 35, W339-W344.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Jiang, P.1
Wu, H.2
Wang, W.3
Ma, W.4
Sun, X.5
Lu, Z.6
-
69
-
-
33745594057
-
Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier
-
Yousef,M., Nebozhyn,M., Shatkay,H., Kanterakis,S., Showe,L.C. and Showe,M.K. (2006) Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier. Bioinformatics, 22, 1325-1334.
-
(2006)
Bioinformatics
, vol.22
, pp. 1325-1334
-
-
Yousef, M.1
Nebozhyn, M.2
Shatkay, H.3
Kanterakis, S.4
Showe, L.C.5
Showe, M.K.6
-
70
-
-
39049169222
-
Ab initio identification of human microRNAs based on structure motifs
-
Brameier,M. and Wiuf,C. (2007) Ab initio identification of human microRNAs based on structure motifs. BMC Bioinformatics, 8, 478.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 478
-
-
Brameier, M.1
Wiuf, C.2
-
71
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie,X., Lu,J., Kulbokas,E.J., Golub,T.R., Mootha,V., Lindblad-Toh,K., Lander,E.S. and Kellis,M. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature, 434, 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
72
-
-
34347355440
-
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
Molnár,A., Schwach,F., Studholme,D.J., Thuenemann,E.C. and Baulcombe,D.C. (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447, 1126-1129.
-
(2007)
Nature
, vol.447
, pp. 1126-1129
-
-
Molnár, A.1
Schwach, F.2
Studholme, D.J.3
Thuenemann, E.C.4
Baulcombe, D.C.5
-
73
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf,P., Rusu,M., Sheridan,R., Sewer,A., Iovino,N., Aravin,A., Pfeffer,S., Rice,A., Kamphorst,A.O., Landthaler,M. et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell, 129, 1401-1414.
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
Pfeffer, S.7
Rice, A.8
Kamphorst, A.O.9
Landthaler, M.10
-
74
-
-
18744367544
-
Clustering and conservation patterns of human microRNAs
-
Altuvia,Y., Landgraf,P., Lithwick,G., Elefant,N., Pfeffer,S., Aravin,A., Brownstein,M.J., Tuschl,T. and Margalit,H. (2005) Clustering and conservation patterns of human microRNAs. Nucleic Acids Res., 33, 2697-2706.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2697-2706
-
-
Altuvia, Y.1
Landgraf, P.2
Lithwick, G.3
Elefant, N.4
Pfeffer, S.5
Aravin, A.6
Brownstein, M.J.7
Tuschl, T.8
Margalit, H.9
-
75
-
-
33745807260
-
An approach for the identification of microRNA with an application to Anopheles gambiae
-
Chatterjee,R. and Chaudhuri,K. (2006) An approach for the identification of microRNA with an application to Anopheles gambiae. Acta Biochim. Pol., 53, 303-309.
-
(2006)
Acta Biochim. Pol
, vol.53
, pp. 303-309
-
-
Chatterjee, R.1
Chaudhuri, K.2
-
76
-
-
39549097946
-
Computational and transcriptional evidence for microRNAs in the honey bee genome
-
Weaver,D., Anzola,J., Evans,J., Reid,J., Reese,J., Childs,K., Zdobnov,E., Samanta,M., Miller,J. and Elsik,C. (2007) Computational and transcriptional evidence for microRNAs in the honey bee genome. Genome Biol., 8, R97.
-
(2007)
Genome Biol
, vol.8
-
-
Weaver, D.1
Anzola, J.2
Evans, J.3
Reid, J.4
Reese, J.5
Childs, K.6
Zdobnov, E.7
Samanta, M.8
Miller, J.9
Elsik, C.10
-
77
-
-
39149087993
-
Computational prediction and experimental validation of Ciona intestinalis microRNA genes
-
Norden-Krichmar,T., Holtz,J., Pasquinelli,A. and Gaasterland,T. (2007) Computational prediction and experimental validation of Ciona intestinalis microRNA genes. BMC Genomics, 8, 445.
-
(2007)
BMC Genomics
, vol.8
, pp. 445
-
-
Norden-Krichmar, T.1
Holtz, J.2
Pasquinelli, A.3
Gaasterland, T.4
-
78
-
-
16344366331
-
Profile-based detection of microRNA precursors in animal genomes
-
Legendre,M., Lambert,A. and Gautheret,D. (2005) Profile-based detection of microRNA precursors in animal genomes. Bioinformatics, 21 841-845.
-
(2005)
Bioinformatics
, vol.21
, pp. 841-845
-
-
Legendre, M.1
Lambert, A.2
Gautheret, D.3
-
79
-
-
0035834489
-
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
-
Gautheret,D. and Lambert,A. (2001) Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol., 313, 1003-1011.
-
(2001)
J. Mol. Biol
, vol.313
, pp. 1003-1011
-
-
Gautheret, D.1
Lambert, A.2
-
80
-
-
24644476482
-
MicroRNA identification based on sequence and structure alignment
-
Wang,X., Zhang,J., Li,F., Gu,J., He,T., Zhang,X. and Li,Y. (2005) MicroRNA identification based on sequence and structure alignment. Bioinformatics, 21, 3610-3614.
-
(2005)
Bioinformatics
, vol.21
, pp. 3610-3614
-
-
Wang, X.1
Zhang, J.2
Li, F.3
Gu, J.4
He, T.5
Zhang, X.6
Li, Y.7
-
81
-
-
34247598415
-
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
-
Will,S., Reiche,K., Hofacker,I.L., Stadler,P.F. and Backofen,R. (2007) Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering. PLoS Comput. Biol., 3, e65.
-
(2007)
PLoS Comput. Biol
, vol.3
-
-
Will, S.1
Reiche, K.2
Hofacker, I.L.3
Stadler, P.F.4
Backofen, R.5
-
82
-
-
33947728394
-
RNA stem-loops: To be or not to be cleaved by RNAse III
-
Ritchie,W., Legendre,M. and Gautheret,D. (2007) RNA stem-loops: To be or not to be cleaved by RNAse III. RNA, 13, 457-462.
-
(2007)
RNA
, vol.13
, pp. 457-462
-
-
Ritchie, W.1
Legendre, M.2
Gautheret, D.3
-
83
-
-
12744262431
-
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
-
Wang,X.-J., Reyes,J.L., Chua,N.-H. and Gaasterland,T. (2004) Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol., 5, R65.
-
(2004)
Genome Biol
, vol.5
-
-
Wang, X.-J.1
Reyes, J.L.2
Chua, N.-H.3
Gaasterland, T.4
-
84
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades,M.W. and Bartel,D.P. (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell, 14, 787-799.
-
(2004)
Mol. Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
85
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
-
Bonnet,E., Wuyts,J., Rouze', P. and dePeer,Y.V. (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc. Natl Acad. Sci. USA 101, 11511-11516.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze', P.3
dePeer, Y.V.4
-
86
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai,A., Johnson,C., Mlotshwa,S., Archer-Evans,S., Manocha,V., Vance,V. and Sundaresan,V. (2005) Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res., 15, 78-91.
-
(2005)
Genome Res
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
Sundaresan, V.7
-
87
-
-
25444490438
-
Computational evidence for hundreds of non-conserved plant microRNAs
-
Lindow,M. and Krogh,A. (2005) Computational evidence for hundreds of non-conserved plant microRNAs. BMC Genomics, 6, 119.
-
(2005)
BMC Genomics
, vol.6
, pp. 119
-
-
Lindow, M.1
Krogh, A.2
-
88
-
-
18844373063
-
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
-
Li,Y., Li,W. and Jin,Y.-X. (2005) Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim. Biophys. Sin., 37, 75-87.
-
(2005)
Acta Biochim. Biophys. Sin
, vol.37
, pp. 75-87
-
-
Li, Y.1
Li, W.2
Jin, Y.-X.3
-
89
-
-
32144438833
-
Identification of plant microRNA homologs
-
Dezulian,T., Remmert,M., Palatnik,J.F., Weigel,D. and Huson,D.H. (2006) Identification of plant microRNA homologs. Bioinformatics, 22 359-360.
-
(2006)
Bioinformatics
, vol.22
, pp. 359-360
-
-
Dezulian, T.1
Remmert, M.2
Palatnik, J.F.3
Weigel, D.4
Huson, D.H.5
-
90
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang,B., Pan,X., Cannon,C.H., Cobb,G.P. and Anderson,T.A. (2006) Conservation and divergence of plant microRNA genes. Plant J., 46, 243-259.
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
91
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar,R., Zhou,X., Zheng,Y., Zhang,W. and Zhu,J. (2008) Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol., 8, 25.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.5
-
92
-
-
2142654329
-
MicroRNA-directed cleavage of HOXB8 mRNA
-
Yekta,S., Shih,I.-H. and Bartel,D.P. (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science, 304, 594-596.
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.-H.2
Bartel, D.P.3
-
93
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes
-
Aukerman,M.J. and Sakai,H. (2003) Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell, 15, 2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
94
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen,X. (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303, 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
95
-
-
2342420041
-
Identification of virus-encoded microRNAs
-
sser,F.A., Chien,M., Russo,J.J., Ju,J., John,B., Enright,A. J., Marks,D., Sander,C. et al. (2004) Identification of virus-encoded microRNAs. Science, 304, 734-736.
-
(2004)
Science
, vol.304
, pp. 734-736
-
-
Pfeffer, S.1
Zavolan, M.2
Gra3
sser, F.A.4
Chien, M.5
Russo, J.J.6
Ju, J.7
John, B.8
Enright, A.J.9
Marks, D.10
Sander, C.11
-
96
-
-
22144437679
-
Silence from within: Endogenous siRNAs and miRNAs
-
Sontheimer,E.J. and Carthew,R.W. (2005) Silence from within: Endogenous siRNAs and miRNAs. Cell, 122, 9-12.
-
(2005)
Cell
, vol.122
, pp. 9-12
-
-
Sontheimer, E.J.1
Carthew, R.W.2
-
97
-
-
0041691111
-
MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms
-
Zeng,Y., Yi,R. and Cullen,B.R. (2003) MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms. Proc. Natl Acad. Sci. USA, 100, 9779-9784.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9779-9784
-
-
Zeng, Y.1
Yi, R.2
Cullen, B.R.3
-
98
-
-
13244278197
-
siRNA and miRNA: An insight into RISCs
-
Tang,G. (2005) siRNA and miRNA: An insight into RISCs. Trends Biochem. Sci., 30, 106-114.
-
(2005)
Trends Biochem. Sci
, vol.30
, pp. 106-114
-
-
Tang, G.1
-
99
-
-
0034101197
-
The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology?
-
Conne,B., Stutz,A. and Vassalli,J.D. (2000) The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology? Nat. Med., 6, 637-641.
-
(2000)
Nat. Med
, vol.6
, pp. 637-641
-
-
Conne, B.1
Stutz, A.2
Vassalli, J.D.3
-
100
-
-
0036468258
-
Antisense transcripts in the human genome
-
Lehner,B., Williams,G., Campbell,R.D. and Sanderson,C.M. (2002) Antisense transcripts in the human genome. Trends Genet., 18 63-65.
-
(2002)
Trends Genet
, vol.18
, pp. 63-65
-
-
Lehner, B.1
Williams, G.2
Campbell, R.D.3
Sanderson, C.M.4
-
101
-
-
4243170045
-
Identification of Drosophila MicroRNA targets
-
Stark,A., Brennecke,J., Russell,R.B. and Cohen,S.M. (2003) Identification of Drosophila MicroRNA targets. PLoS Biol., 1 E60.
-
(2003)
PLoS Biol
, vol.1
-
-
Stark, A.1
Brennecke, J.2
Russell, R.B.3
Cohen, S.M.4
-
102
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench,J.G. and Sharp,P.A. (2004) Specificity of microRNA target selection in translational repression. Genes Dev., 18, 504-511.
-
(2004)
Genes Dev
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
103
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke,J., Stark,A., Russell,R.B. and Cohen,S.M. (2005) Principles of microRNA-target recognition. PLoS Biol., 3, e85.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
104
-
-
33745248430
-
microRNA target predictions in animals
-
Rajewsky,N. (2006) microRNA target predictions in animals. Nat. Genet., 38(Suppl.), S8-S13.
-
(2006)
Nat. Genet
, vol.38
, Issue.SUPPL.
-
-
Rajewsky, N.1
-
106
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright,A.J., John,B., Gaul,U., Tuschl,T., Sander,C. and Marks,D.S. (2003) MicroRNA targets in Drosophila. Genome Biol., 5, R1.
-
(2003)
Genome Biol
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
107
-
-
14044251458
-
Human MicroRNA targets
-
John,B., Enright,A.J., Aravin,A., Tuschl,T., Sander,C. and Marks,D.S. (2004) Human MicroRNA targets. PLoS Biol., 2, e363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
108
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis,B.P., Shih,I.-H., Jones-Rhoades,M.W., Bartel,D.P. and Burge,C.B. (2003) Prediction of mammalian microRNA targets. Cell, 115, 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.-H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
109
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis,B.P., Burge,C.B. and Bartel,D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
110
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky,N. and Socci,N.D. (2004) Computational identification of microRNA targets. Dev. Biol., 267, 529-535.
-
(2004)
Dev. Biol
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
111
-
-
2442672918
-
A combined computational-experimental approach predicts human microRNA targets
-
Kiriakidou,M., Nelson,P.T., Kouranov,A., Fitziev,P., Bouyioukos,C., Mourelatos,Z. and Hatzigeorgiou,A. (2004) A combined computational-experimental approach predicts human microRNA targets. Genes Dev., 18, 1165-1178.
-
(2004)
Genes Dev
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
Nelson, P.T.2
Kouranov, A.3
Fitziev, P.4
Bouyioukos, C.5
Mourelatos, Z.6
Hatzigeorgiou, A.7
-
112
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier,M., Steffen,P., Hochsmann,M. and Giegerich,R. (2004) Fast and effective prediction of microRNA/target duplexes. RNA, 10, 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
113
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek,A., Grün,D., Poy,M.N., Wolf,R., Rosenberg,L., Epstein,E.J., Macmenamin,P., daPiedade,I., Gunsalus,K.C., Stoffel,M. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
-
(2005)
Nat. Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grün, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
Macmenamin, P.7
daPiedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
114
-
-
25444461163
-
Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method
-
Burgler,C. and Macdonald,P.M. (2005) Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method. BMC Genomics, 6, 88.
-
(2005)
BMC Genomics
, vol.6
, pp. 88
-
-
Burgler, C.1
Macdonald, P.M.2
-
115
-
-
55449121696
-
Revealing post-transcriptional regulatory elements through network-level conservation
-
Chan,C.S., Elemento,O. and Tavazoie,S. (2005) Revealing post-transcriptional regulatory elements through network-level conservation. PLoS Comput. Biol., 1, e69.
-
(2005)
PLoS Comput. Biol
, vol.1
-
-
Chan, C.S.1
Elemento, O.2
Tavazoie, S.3
-
116
-
-
34347398567
-
Inference of miRNA targets using evolutionary conservation and pathway analysis
-
Gaidatzis,D., vanNimwegen,E., Hausser,J. and Zavolan,M. (2007) Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics, 8, 69.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 69
-
-
Gaidatzis, D.1
vanNimwegen, E.2
Hausser, J.3
Zavolan, M.4
-
117
-
-
22244447130
-
Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms
-
Saetrom,O., Snøve,O. and Saetrom,P. (2005) Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms. RNA, 11, 995-1003.
-
(2005)
RNA
, vol.11
, pp. 995-1003
-
-
Saetrom, O.1
Snøve, O.2
Saetrom, P.3
-
118
-
-
33749645474
-
miTarget: MicroRNA target gene prediction using a support vector machine
-
Kim,S.-K., Nam,J.-W., Rhee,J.-K., Lee,W.-J. and Zhang,B.-T. (2006) miTarget: MicroRNA target gene prediction using a support vector machine. BMC Bioinformatics, 7, 411.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 411
-
-
Kim, S.-K.1
Nam, J.-W.2
Rhee, J.-K.3
Lee, W.-J.4
Zhang, B.-T.5
-
119
-
-
28944439309
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
-
Stark,A., Brennecke,J., Bushati,N., Russell,R.B. and Cohen,S.M. (2005) Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell, 123, 1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
120
-
-
38849145861
-
Prediction of both conserved and nonconserved microRNA targets in animals
-
Wang,X. and Naqa,I.M.E. (2008) Prediction of both conserved and nonconserved microRNA targets in animals. Bioinformatics, 24 325-332.
-
(2008)
Bioinformatics
, vol.24
, pp. 325-332
-
-
Wang, X.1
Naqa, I.M.E.2
-
121
-
-
40549138450
-
Comparing sequence and expression for predicting microRNA targets using GenMiR3
-
Huang,J.C., Frey,B.J. and Morris,Q.D. (2008) Comparing sequence and expression for predicting microRNA targets using GenMiR3. Pac. Symp. on Biocomput., 52-63
-
(2008)
Pac. Symp. on Biocomput
, pp. 52-63
-
-
Huang, J.C.1
Frey, B.J.2
Morris, Q.D.3
-
122
-
-
44349128983
-
-
Cheng,C. and Li,L.M. (2008) Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS ONE, 3 e1989.
-
Cheng,C. and Li,L.M. (2008) Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS ONE, 3 e1989.
-
-
-
-
123
-
-
15244354492
-
Incorporating structure to predict microRNA targets
-
Robins,H., Li,Y. and Padgett,R.W. (2005) Incorporating structure to predict microRNA targets. Proc. Natl Acad. Sci. USA, 102, 4006-4009.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4006-4009
-
-
Robins, H.1
Li, Y.2
Padgett, R.W.3
-
124
-
-
33947424813
-
MicroTar: Predicting microRNA targets from RNA duplexes
-
Thadani,R. and Tammi,M.T. (2006) MicroTar: Predicting microRNA targets from RNA duplexes. BMC Bioinformatics, 7(Suppl. 5), S20.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 5
-
-
Thadani, R.1
Tammi, M.T.2
-
125
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz,M., Iovino,N., Unnerstall,U., Gaul,U. and Segal,E. (2007) The role of site accessibility in microRNA target recognition. Nat. Genet., 39, 1278-1284.
-
(2007)
Nat. Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
126
-
-
50849141708
-
mirWIP: MicroRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts
-
doi:101038/nmeth.1247
-
Hammell,M., Long,D., Zhang,L., Lee,A., Carmack,C., Han,M., Ding,Y. and Ambros,V. (2008) mirWIP: MicroRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat. Methods, doi:101038/nmeth.1247.
-
(2008)
Nat. Methods
-
-
Hammell, M.1
Long, D.2
Zhang, L.3
Lee, A.4
Carmack, C.5
Han, M.6
Ding, Y.7
Ambros, V.8
-
127
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
-
Bonnet,E., Wuyts,J., Rouzé,P. and dePeer,Y.V. (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics, 20, 2911-2917.
-
(2004)
Bioinformatics
, vol.20
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouzé, P.3
dePeer, Y.V.4
-
128
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang,B.H., Pan,X.P., Cox,S.B., Cobb,G.P. and Anderson,T.A. (2006) Evidence that miRNAs are different from other RNAs. Cell. Mol. Life Sci., 63, 246-254.
-
(2006)
Cell. Mol. Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
Cobb, G.P.4
Anderson, T.A.5
-
129
-
-
33646240072
-
Direct evolution of genetic robustness in microRNA
-
Borenstein,E. and Ruppin,E. (2006) Direct evolution of genetic robustness in microRNA. Proc. Natl Acad. Sci. USA, 103, 6593-6598.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 6593-6598
-
-
Borenstein, E.1
Ruppin, E.2
-
130
-
-
56249145105
-
Structure of the guide-strand-containing argonaute silencing complex
-
Wang,Y., Sheng,G., Juranek,S., Tuschl,T. and Patel,D.J. (2008) Structure of the guide-strand-containing argonaute silencing complex. Nature 456, 209-213.
-
(2008)
Nature
, vol.456
, pp. 209-213
-
-
Wang, Y.1
Sheng, G.2
Juranek, S.3
Tuschl, T.4
Patel, D.J.5
-
131
-
-
10644253787
-
Architecture of a validated microRNA::Target interaction
-
Vella,M.C., Reinert,K. and Slack,F.J. (2004) Architecture of a validated microRNA::Target interaction. Chem. Biol., 11, 1619-1623.
-
(2004)
Chem. Biol
, vol.11
, pp. 1619-1623
-
-
Vella, M.C.1
Reinert, K.2
Slack, F.J.3
-
132
-
-
33745053086
-
RNA editing of human microRNAs
-
Blow,M.J., Grocock,R.J., vanDongen,S., Enright,A.J., Dicks,E., Futreal,P.A., Wooster,R. and Stratton,M.R. (2006) RNA editing of human microRNAs. Genome Biol., 7, R27.
-
(2006)
Genome Biol
, vol.7
-
-
Blow, M.J.1
Grocock, R.J.2
vanDongen, S.3
Enright, A.J.4
Dicks, E.5
Futreal, P.A.6
Wooster, R.7
Stratton, M.R.8
-
133
-
-
34848865601
-
A-to-I editing challenger or ally to the microRNA process
-
Ohman,M. (2007) A-to-I editing challenger or ally to the microRNA process. Biochimie, 89, 1171-1176.
-
(2007)
Biochimie
, vol.89
, pp. 1171-1176
-
-
Ohman, M.1
-
134
-
-
27344448283
-
Human microRNAs target a functionally distinct population of genes with AT-rich 3′ UTRs
-
Robins,H. and Press,W.H. (2005) Human microRNAs target a functionally distinct population of genes with AT-rich 3′ UTRs. Proc. Natl Acad. Sci. USA, 102, 15557-15562.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15557-15562
-
-
Robins, H.1
Press, W.H.2
|