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Volumn , Issue , 2008, Pages 52-63

COmparing sequence and expression for predicting microRNA targets using GENMiR3

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; CANDIDATE SEQUENCES; EXPRESSION PROFILE; GENE ONTOLOGY; INDIVIDUAL SEQUENCES; MICRORNAS; MRNA EXPRESSION; TARGET SITES; TOTAL ENERGY;

EID: 40549138450     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (28)

References (20)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros, V. (2004) The functions of animal microRNAs. Nature 431, 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 2
    • 23944514849 scopus 로고    scopus 로고
    • Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
    • Bagga, S. et a1 (2005) Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122, 553-63.
    • (2005) Cell , vol.122 , pp. 553-563
    • Bagga, S.1
  • 3
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human gcnes arc microRNA targets
    • Lewis, B. P., Burge, C. B., and Bartel, D. P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human gcnes arc microRNA targets. Cell 120, 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 4
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek, A. et a1 (2005) Combinatorial microRNA target predictions. Nut. Gen. 37, 495-500.
    • (2005) Nut. Gen , vol.37 , pp. 495-500
    • Krek, A.1
  • 5
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of microRNA-target sites and their corresponding RNA/RNA complexes
    • Huynh, T. et ul (2006) A pattern-based method for the identification of microRNA-target sites and their corresponding RNA/RNA complexes. Cell 126, 1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Huynh, T.1    Ul, E.2
  • 6
    • 33644499134 scopus 로고    scopus 로고
    • Cell-type-specific signatures of microRNAs on target mRNA expression
    • Sood, P. et a1 (2006) Cell-type-specific signatures of microRNAs on target mRNA expression. Proceedings of the National Academy of Sciences (PNAS) 103. 2746-2751.
    • (2006) Proceedings of the National Academy of Sciences (PNAS) , vol.103 , pp. 2746-2751
    • Sood, P.1
  • 7
    • 13944282215 scopus 로고    scopus 로고
    • Microarray analysis shows that some microRNAs down-regulate large numbers of target mRNAs
    • Lim, L. P. et a1 (2005) Microarray analysis shows that some microRNAs down-regulate large numbers of target mRNAs. Nature 433, 769-773.
    • (2005) Nature , vol.433 , pp. 769-773
    • Lim, L.P.1
  • 8
    • 34447288056 scopus 로고    scopus 로고
    • Bayesian learning of mi-croRNA targets using sequence and expression datA
    • Huang, J. C., Morris, Q. D., and Frey, B. J. (2007) Bayesian learning of mi-croRNA targets using sequence and expression datA. J. Comp. Bio. 14(5), 550-563.
    • (2007) J. Comp. Bio , vol.14 , Issue.5 , pp. 550-563
    • Huang, J.C.1    Morris, Q.D.2    Frey, B.J.3
  • 10
    • 34247258888 scopus 로고    scopus 로고
    • Potent effect, of target, stmcture on microR
    • Long, D. et al. (2007) Potent effect, of target, stmcture on microR. NA lunction. Nat. Struct. Mol. Bio. 14, 287-294.
    • (2007) NA Lunction. Nat. Struct. Mol. Bio , vol.14 , pp. 287-294
    • Long, D.1
  • 11
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
    • Grimson, A. et, a1 (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell 27, 91-105.
    • (2007) Mol. Cell , vol.27 , pp. 91-105
    • Grimson, A.1
  • 13
    • 0002788893 scopus 로고    scopus 로고
    • A view of the em algorithm that jus-tifies incremental, sparse, and other variants, 355-368
    • Jordan M I., ed. MIT Press
    • Neal, R. M., and Hinton, G. E. (1998) A view of the EM algorithm that jus-tifies incremental, sparse, and other variants, 355-368. In Jordan, M. I., ed., Learning in Graphical Models, MIT Press.
    • (1998) Learning in Graphical Models
    • Neal, R.M.1    Hinton, G.E.2
  • 14
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • Lu, J. et al. (2005) MicroRNA expression profiles classify human cancers. Nature 435, 834-8.
    • (2005) Nature , vol.435 , pp. 834-838
    • Lu, J.1
  • 15
    • 0347201147 scopus 로고    scopus 로고
    • Multiclass cancer diagnosis using tumor gcnc ex-pression signatures
    • Ramaswamy, S. et al. (2001) Multiclass cancer diagnosis using tumor gcnc ex-pression signatures. Proceedings of the National Academy of Sciences (PNAS) 98, 15149-15154.
    • (2001) Proceedings of the National Academy of Sciences (PNAS) , vol.98 , pp. 15149-15154
    • Ramaswamy, S.1
  • 16
    • 0037250168 scopus 로고    scopus 로고
    • The UCSC genome browser database
    • Karolchik, D. et a1 (2003) The UCSC Genome Browser Database. Nucl. Acids Res. 31(1), 51-54.
    • (2003) Nucl. Acids Res , vol.31 , Issue.1 , pp. 51-54
    • Karolchik, D.1
  • 17
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, in-sect, worm, and yeast genomes
    • Siepel, A, et al. (2005) Evolutionarily conserved elements in vertebrate, in-sect, worm, and yeast genomes. Genome Res. 15, 1034-1050.
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1
  • 18
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker, I. (2003) Vienna RNA secondary structure server. Nucl. Acids Res. 31(13), 3429-3431.
    • (2003) Nucl. Acids Res , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.1
  • 19
    • 24044522270 scopus 로고    scopus 로고
    • BioMart and Bioconductor: A powerful link between bio-logical databases and microarray data analysis
    • Durinck, S. (2005) BioMart and Bioconductor: a powerful link between bio-logical databases and microarray data analysis. Bioinformatics 21(16), 3439-40.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3439-3440
    • Durinck, S.1
  • 20
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat SOC Ser B Methodol 57, 289-300.
    • (1995) J R Stat SOC ser B Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.