-
1
-
-
0038708326
-
The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs
-
Abrahante, J.E., Daul, A.L., Li, M., Volk, M.L., Tennessen, J.M., Miller, E.A., and Rougvie, A.E. 2003. The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs. Dev. Cell 4: 625-637.
-
(2003)
Dev. Cell
, vol.4
, pp. 625-637
-
-
Abrahante, J.E.1
Daul, A.L.2
Li, M.3
Volk, M.L.4
Tennessen, J.M.5
Miller, E.A.6
Rougvie, A.E.7
-
2
-
-
0037418839
-
Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
-
Brennecke, J., Hipfner, D.R., Stark, A., Russell, R.B., and Cohen, S.M. 2003. bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
-
(2003)
Cell
, vol.113
, pp. 25-36
-
-
Brennecke, J.1
Hipfner, D.R.2
Stark, A.3
Russell, R.B.4
Cohen, S.M.5
-
3
-
-
0037327164
-
Discovery of genes with highly restricted expression patterns in the Drosophila wing disc using DNA oligonucleotide microarrays
-
Butler, M.J., Jacobsen, T.L., Cain, D.M., Jarman, M.G., Hubank, M., Whittle, J.R.S., Phillips, R., and Simcox, A. 2003. Discovery of genes with highly restricted expression patterns in the Drosophila wing disc using DNA oligonucleotide microarrays. Development 130: 659-670.
-
(2003)
Development
, vol.130
, pp. 659-670
-
-
Butler, M.J.1
Jacobsen, T.L.2
Cain, D.M.3
Jarman, M.G.4
Hubank, M.5
Whittle, J.R.S.6
Phillips, R.7
Simcox, A.8
-
4
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench, J.G. and Sharp, P.A. 2004. Specificity of microRNA target selection in translational repression. Genes & Dev. 18: 504-511.
-
(2004)
Genes & Dev.
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
5
-
-
0033179477
-
Coordinated transcriptional regulation of the unc-25 glutamic acid decarboxylase and the unc-47 GABA vesicular transporter by the Caenorhabditis elegans UNC-30 homeodomain protein
-
Eastman, C., Horvitz, H., and Jin, Y. 1999. Coordinated transcriptional regulation of the unc-25 glutamic acid decarboxylase and the unc-47 GABA vesicular transporter by the Caenorhabditis elegans UNC-30 homeodomain protein. J. Neurosci. 19: 6225-6234.
-
(1999)
J. Neurosci.
, vol.19
, pp. 6225-6234
-
-
Eastman, C.1
Horvitz, H.2
Jin, Y.3
-
6
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright, A.J., John, B., Gaul, U., Tuschl, T., Sander, C., and Marks, D.S. 2003. MicroRNA targets in Drosophila. Genome Biol. 5: R1.
-
(2003)
Genome Biol.
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
7
-
-
0033729144
-
A systematic approach to dynamic programming in bioinformatics
-
Giegerich, R. 2000. A systematic approach to dynamic programming in bioinformatics. Bioinformatics 16: 665-677.
-
(2000)
Bioinformatics
, vol.16
, pp. 665-677
-
-
Giegerich, R.1
-
8
-
-
84959041656
-
Implementing algebraic dynamic programming in the functional and the imperative programming paradigm
-
(eds. E. Boiten and B. Möller). Springer LNCS 2386, Heidelberg, Germany
-
Giegerich, R. and Steffen, P. 2002. Implementing algebraic dynamic programming in the functional and the imperative programming paradigm. In Mathematics of program construction (eds. E. Boiten and B. Möller), pp. 1-20. Springer LNCS 2386, Heidelberg, Germany.
-
(2002)
Mathematics of Program Construction
, pp. 1-20
-
-
Giegerich, R.1
Steffen, P.2
-
9
-
-
2442604484
-
A discipline of dynamic programming over sequence data
-
Giegerich, R., Meyer, C., and Steffen, P. 2004. A discipline of dynamic programming over sequence data. Sci. Comput. Prog. 51: 215-263.
-
(2004)
Sci. Comput. Prog.
, vol.51
, pp. 215-263
-
-
Giegerich, R.1
Meyer, C.2
Steffen, P.3
-
10
-
-
0037033801
-
Micro-RNAs: Small is plentiful
-
Grosshans, H. and Slack, F.J. 2002. Micro-RNAs: Small is plentiful. J. Cell Biol. 156: 17-21.
-
(2002)
J. Cell Biol.
, vol.156
, pp. 17-21
-
-
Grosshans, H.1
Slack, F.J.2
-
12
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I.L. 2003. Vienna RNA secondary structure server. Nucleic Acids Res. 31: 3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
13
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T., Barker, D., Birney, E., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., et al. 2002. The Ensembl genome database project. Nucleic Acids. Res. 30: 38-41.
-
(2002)
Nucleic Acids. Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
14
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin, S. and Altschul, S.F. 1990. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. 87: 2264-2268.
-
(1990)
Proc. Natl. Acad. Sci.
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
15
-
-
4644259905
-
Nerfin-1, a member of a conserved Zn-finger gene subfamily, is required for proper CNS axon guidance
-
The Genetics Society of America, Bethesda, MD
-
Kuzin, A., Stivers, C., Brody, T., and Odenwald, W.F. 2003. nerfin-1, a member of a conserved Zn-finger gene subfamily, is required for proper CNS axon guidance. In A. Dros. Res. Conf. 44, page 710B. The Genetics Society of America, Bethesda, MD.
-
(2003)
A. Dros. Res. Conf. 44
, vol.44
-
-
Kuzin, A.1
Stivers, C.2
Brody, T.3
Odenwald, W.F.4
-
16
-
-
0036544755
-
Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
-
Lai, E. 2002. Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat. Genet. 30: 363-364.
-
(2002)
Nat. Genet.
, vol.30
, pp. 363-364
-
-
Lai, E.1
-
17
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau, N.C., Lim, L.P., Weinstein, E.G., and Bartel, D.P. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
18
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R.C., Feinbaum, R.L., and Ambros, V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
19
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P., Shih, I., Jones-Rhoades, M.W., Bartel, D.P., and Burge, C.B. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
20
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim, L., Lau, N., Weinstein, E., Abdelhakim, A., Yekta, S., Rhoades, M., Burge, C., and Bartel, D. 2003. The microRNAs of Caenorhabditis elegans. Genes & Dev. 17: 991-1008.
-
(2003)
Genes & Dev.
, vol.17
, pp. 991-1008
-
-
Lim, L.1
Lau, N.2
Weinstein, E.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.6
Burge, C.7
Bartel, D.8
-
21
-
-
0037693842
-
The C. elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target
-
Lin, S.Y., Johnson, S.M., Abraham, M., Vella, M.C., Pasquinelli, A., Gamberi, C., Gottlieb, E., and Slack, F.J. 2003. The C. elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target. Dev. Cell 4: 639-650.
-
(2003)
Dev. Cell
, vol.4
, pp. 639-650
-
-
Lin, S.Y.1
Johnson, S.M.2
Abraham, M.3
Vella, M.C.4
Pasquinelli, A.5
Gamberi, C.6
Gottlieb, E.7
Slack, F.J.8
-
22
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
23
-
-
0036080432
-
Short-range cell interactions and cell survival in the Drosophila wing
-
Milan, M., Perez, L., and Cohen, S. 2002. Short-range cell interactions and cell survival in the Drosophila wing. Dev. Cell 2: 797-805.
-
(2002)
Dev. Cell
, vol.2
, pp. 797-805
-
-
Milan, M.1
Perez, L.2
Cohen, S.3
-
24
-
-
0030970775
-
The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA
-
Moss, E.G., Lee, R.C., and Ambros, V. 1997. The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA. Cell 88: 637-646.
-
(1997)
Cell
, vol.88
, pp. 637-646
-
-
Moss, E.G.1
Lee, R.C.2
Ambros, V.3
-
25
-
-
4644241708
-
Functional analysis of the Drosophila spastin gene
-
The Genetics Society of America, Bethesda, MD
-
Orso, G., Rossetto, M., Sartori, E., and Daga, A. 2003. Functional analysis of the Drosophila spastin gene. In A. Dros. Res. Conf. 44, page 786C. The Genetics Society of America, Bethesda, MD.
-
(2003)
A. Dros. Res. Conf. 44
, vol.44
-
-
Orso, G.1
Rossetto, M.2
Sartori, E.3
Daga, A.4
-
26
-
-
0036796883
-
Developmental functions of the Distal-less/Dlx homeobox genes
-
Panganiban, G. and Rubenstein, J. 2002. Developmental functions of the Distal-less/Dlx homeobox genes. Development 129: 4371-4386.
-
(2002)
Development
, vol.129
, pp. 4371-4386
-
-
Panganiban, G.1
Rubenstein, J.2
-
27
-
-
0036087522
-
UTRdb and UTRsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002
-
Pesole, G., Liuni, S., Grillo, G., Licciulli, F., Mignone, F., Gissi, C., and Saccone, C. 2002. UTRdb and UTRsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res. 30: 335-340.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 335-340
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
Licciulli, F.4
Mignone, F.5
Gissi, C.6
Saccone, C.7
-
28
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky, N. and Socci, N.D. 2004. Computational identification of microRNA targets. Dev. Biol. 267: 529-535.
-
(2004)
Dev. Biol.
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
29
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart, B.J., Slack, F.J., Basson, M., Pasquinelli, A.E., Bettinger, J.C., Rougvie, A.E., Horvitz, H.R., and Ruvkun, G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
30
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades, M.W., Reinhart, B.J., Lim, L.P., Burge, C.B., Bartel, B., and Bartel, D.P. 2002. Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
31
-
-
0033524952
-
A dynamic programming algorithm for RNA structure prediction including pseudoknots
-
Rivas, E. and Eddy, S.R. 1999. A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol. 285: 2053-2068.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2053-2068
-
-
Rivas, E.1
Eddy, S.R.2
-
32
-
-
0033634943
-
The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor
-
Slack, F.J., Basson, M., Liu, Z., Ambros, V., Horvitz, H.R., and Ruvkun, G. 2000. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol. Cell 5: 659-669.
-
(2000)
Mol. Cell
, vol.5
, pp. 659-669
-
-
Slack, F.J.1
Basson, M.2
Liu, Z.3
Ambros, V.4
Horvitz, H.R.5
Ruvkun, G.6
-
33
-
-
4243170045
-
Identification of Drosophila microRNA targets
-
Stark, A., Brennecke, J., Russell, R.B., and Cohen, S.M. 2003. Identification of Drosophila microRNA targets. PLoS Biol. 1: 1-13.
-
(2003)
PLoS Biol.
, vol.1
, pp. 1-13
-
-
Stark, A.1
Brennecke, J.2
Russell, R.B.3
Cohen, S.M.4
-
34
-
-
0028234758
-
Rapid and accurate estimates of statistical significance for sequence database searches
-
Waterman, M.S. and Vingron, M. 1994. Rapid and accurate estimates of statistical significance for sequence database searches. Proc. Natl. Acad. Sci. 91: 4625-4628.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 4625-4628
-
-
Waterman, M.S.1
Vingron, M.2
-
35
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
36
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker, M. and Stiegler, P. 1981. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9: 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|