-
1
-
-
0037418839
-
Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
-
Brennecke, J., Hipfner, D.R., Stark, A., Russell, R.B. & Cohen, S.M. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113, 25-36 (2003).
-
(2003)
Cell
, vol.113
, pp. 25-36
-
-
Brennecke, J.1
Hipfner, D.R.2
Stark, A.3
Russell, R.B.4
Cohen, S.M.5
-
2
-
-
4243170045
-
Identification of Drosophila microRNA targets
-
Stark, A., Brennecke, J., Russell, R.B. & Cohen, S.M. Identification of Drosophila microRNA targets. PLoS Biol. 1, E60 (2003).
-
(2003)
Plos Biol
, vol.1
, pp. E60
-
-
Stark, A.1
Brennecke, J.2
Russell, R.B.3
Cohen, S.M.4
-
3
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright, A.J. et al. MicroRNA targets in Drosophila. Genome Biol. 5, R1 (2003).
-
(2003)
Genome Biol
, vol.5
, pp. R1
-
-
Enright, A.J.1
-
4
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky, N. & Socci, N.D. Computational identification of microRNA targets. Dev. Biol. 267, 529-535 (2004).
-
(2004)
Dev. Biol
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
5
-
-
14044251458
-
Human MicroRNA targets
-
John, B. et al. Human MicroRNA targets. PLoS Biol. 2, e363 (2004).
-
(2004)
Plos Biol
, vol.2
, pp. e363
-
-
John, B.1
-
6
-
-
2442672918
-
A combined computational-experimental approach predicts human microRNA targets
-
Kiriakidou, M. et al. A combined computational-experimental approach predicts human microRNA targets. Genes Dev. 18, 1165-1178 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
-
7
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P., Shih, I.H., Jones-Rhoades, M.W., Bartel, D.P. & Burge, C.B. Prediction of mammalian microRNA targets. Cell 115, 787-798 (2003).
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
8
-
-
0036544755
-
Micro RNAs are complementary to 3’ UTR sequence motifs that mediate negative post-transcriptional regulation
-
Lai, E.C. Micro RNAs are complementary to 3’ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat. Genet. 30, 363-364 (2002).
-
(2002)
Nat. Genet
, vol.30
, pp. 363-364
-
-
Lai, E.C.1
-
9
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116, 281-297 (2004).
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
10
-
-
26944498633
-
Prediction and validation of microRNAs and their targets
-
Bentwich, I. Prediction and validation of microRNAs and their targets. FEBS Lett. 579, 5904-5910 (2005).
-
(2005)
FEBS Lett
, vol.579
, pp. 5904-5910
-
-
Bentwich, I.1
-
11
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
published online 13 February, (doi:10.1073/pnas.0511045103)
-
Sood, P., Krek, A., Zavolan, M., Macino, G. & Rajewsky, N. Cell-type-specific signatures of microRNAs on target mRNA expression. Proc. Natl. Acad. Sci. USA, published online 13 February 2006 (doi:10.1073/pnas.0511045103).
-
(2006)
Proc. Natl. Acad. Sci. USA
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
12
-
-
33645119514
-
MicroRNAs direct rapid deadenylation of mRNA
-
Wu, L., Fan, J. & Belasco, J.G. MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl. Acad. Sci. USA 103, 4034-4039 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 4034-4039
-
-
Wu, L.1
Fan, J.2
Belasco, J.G.3
-
13
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez, A.J. et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312, 75-79 (2006).
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
-
14
-
-
27344448283
-
Human microRNAs target a functionally distinct population of genes with AT-rich 3’ UTRs
-
Robins, H. & Press, W.H. Human microRNAs target a functionally distinct population of genes with AT-rich 3’ UTRs. Proc. Natl. Acad. Sci. USA 102, 15557-15562 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15557-15562
-
-
Robins, H.1
Press, W.H.2
-
15
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke, J., Stark, A., Russell, R.B. & Cohen, S.M. Principles of microRNA-target recognition. PLoS Biol. 3, e85 (2005).
-
(2005)
Plos Biol
, vol.3
, pp. e85
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
16
-
-
27344456287
-
MicroRNA target predictions across seven Drosophila species and comparison to mammalian targets
-
Grün, D., Wang, Y.L., Langenberger, D., Gunsalus, K.C. & Rajewsky, N. microRNA target predictions across seven Drosophila species and comparison to mammalian targets. PLoS Comput. Biol. 1, e13 (2005).
-
(2005)
Plos Comput. Biol
, vol.1
, pp. e13
-
-
Grün, D.1
Wang, Y.L.2
Langenberger, D.3
Gunsalus, K.C.4
Rajewsky, N.5
-
17
-
-
20944450160
-
Combinatorial microRNA target predictions. Nat
-
Krek, A. et al. Combinatorial microRNA target predictions. Nat. Genet. 37, 495-500 (2005).
-
(2005)
Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
-
18
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P., Burge, C.B. & Bartel, D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120, 15-20 (2005).
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
19
-
-
28944439309
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3’UTR evolution
-
Stark, A., Brennecke, J., Bushati, N., Russell, R.B. & Cohen, S.M. Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3’UTR evolution. Cell 123, 1133-1146 (2005).
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
20
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3’ UTRs by comparison of several mammals
-
Xie, X. et al. Systematic discovery of regulatory motifs in human promoters and 3’ UTRs by comparison of several mammals. Nature 434, 338-345 (2005).
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
-
21
-
-
33644756532
-
A genome-wide map of conserved microRNA targets in C. Elegans
-
Lall, S. et al. A genome-wide map of conserved microRNA targets in C. elegans. Curr. Biol. 16, 460-471 (2006).
-
(2006)
Curr. Biol
, vol.16
, pp. 460-471
-
-
Lall, S.1
-
22
-
-
15244354492
-
Incorporating structure to predict microRNA targets
-
Robins, H., Li, Y. & Padgett, R.W. Incorporating structure to predict microRNA targets. Proc. Natl. Acad. Sci. USA 102, 4006-4009 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4006-4009
-
-
Robins, H.1
Li, Y.2
Padgett, R.W.3
-
23
-
-
22444437609
-
Serum response factor regulates a muscle- specific microRNA that targets Hand2 during cardiogenesis
-
Zhao, Y., Samal, E. & Srivastava, D. Serum response factor regulates a muscle- specific microRNA that targets Hand2 during cardiogenesis. Nature 436, 214-220 (2005).
-
(2005)
Nature
, vol.436
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
24
-
-
29144505309
-
The widespread impact of mammalian MicroRNAs on mRNA repres-? Sion and evolution
-
Farh, K.K. et al. The widespread impact of mammalian MicroRNAs on mRNA repres-? sion and evolution. Science 310, 1817-1821 (2005).
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.1
-
25
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
26
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier, M., Steffen, P., Hochsmann, M. & Giegerich, R. Fast and effective prediction of microRNA/target duplexes. RNA 10, 1507-1517 (2004).
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
27
-
-
55449121696
-
Revealing posttranscriptional regulatory elements through network-level conservation
-
Chan, C.S., Elemento, O. & Tavazoie, S. Revealing posttranscriptional regulatory elements through network-level conservation. PLoS Comput. Biol. 1, e69 (2005).
-
(2005)
Plos Comput. Biol
, vol.1
, pp. e69
-
-
Chan, C.S.1
Elemento, O.2
Tavazoie, S.3
-
28
-
-
31844442152
-
Computational analysis of microRNA targets in Caenorhabditis elegans
-
Watanabe, Y. et al. Computational analysis of microRNA targets in Caenorhabditis elegans. Gene 365, 2-10 (2006).
-
(2006)
Gene
, vol.365
, pp. 2-10
-
-
Watanabe, Y.1
-
29
-
-
31044444975
-
TarBase: A comprehensive database of experimentally supported animal microRNA targets
-
Sethupathy, P., Corda, B. & Hatzigeorgiou, A.G. TarBase: A comprehensive database of experimentally supported animal microRNA targets. RNA 12, 192-197 (2006).
-
(2006)
RNA
, vol.12
, pp. 192-197
-
-
Sethupathy, P.1
Corda, B.2
Hatzigeorgiou, A.G.3
-
30
-
-
33644878178
-
Argonaute-a database for gene regulation by mammalian microRNAs
-
Shahi, P. et al. Argonaute-a database for gene regulation by mammalian microRNAs. Nucleic Acids Res. 34, D115-D118 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D115-D118
-
-
Shahi, P.1
-
31
-
-
33644873722
-
MiRNAMAP: Genomic maps of microRNA genes and their target genes in mammalian genomes
-
Hsu, P.W. et al. miRNAMAP: Genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Res. 34, D135-D139 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D135-D139
-
-
Hsu, P.W.1
-
32
-
-
33644861212
-
ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
-
Montgomery, S.B. et al. ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics 22, 637-640 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 637-640
-
-
Montgomery, S.B.1
-
33
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench, J.G. & Sharp, P.A. Specificity of microRNA target selection in translational repression. Genes Dev. 18, 504-511 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
34
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh, K. et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438, 803-819 (2005).
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
-
35
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim, L.P. et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433, 769-773 (2005).
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
-
36
-
-
23944514849
-
Regulation by let-7 and lin-4 microRNAs results in target mRNA degradation
-
Bagga, S. et al. Regulation by let-7 and lin-4 microRNAs results in target mRNA degradation. Cell 122, 553-563 (2005).
-
(2005)
Cell
, vol.122
, pp. 553-563
-
-
Bagga, S.1
-
37
-
-
28444469246
-
Silencing of microRNAs in vivo with ‘antagomirs’
-
Krutzfeldt, J. et al. Silencing of microRNAs in vivo with ‘antagomirs’. Nature 438, 685-689 (2005).
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krutzfeldt, J.1
-
38
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
Bartel, D.P. & Chen, C.Z. Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs. Nat. Rev. Genet. 5, 396-400 (2004).
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.Z.2
-
39
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker, H.J., Li, H. & Siggia, E.D. Regulatory element detection using correlation with expression. Nat. Genet. 27, 167-171 (2001).
-
(2001)
Nat. Genet
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
40
-
-
29144500327
-
Profiling condition- specific, genome-wide regulation of mRNA stability in yeast
-
Foat, B.C., Houshmandi, S.S., Olivas, W.M. & Bussemaker, H.J. Profiling condition- specific, genome-wide regulation of mRNA stability in yeast. Proc. Natl. Acad. Sci. USA 102, 17675-17680 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17675-17680
-
-
Foat, B.C.1
Houshmandi, S.S.2
Olivas, W.M.3
Bussemaker, H.J.4
-
41
-
-
0041941514
-
The small RNA profile during Drosophila melanogaster development
-
Aravin, A.A. et al. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5, 337-350 (2003).
-
(2003)
Dev.Cell
, vol.5
, pp. 337-350
-
-
Aravin, A.A.1
-
42
-
-
22344449952
-
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
-
Chen, P.Y. et al. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev. 19, 1288-1293 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 1288-1293
-
-
Chen, P.Y.1
-
43
-
-
13944260434
-
Microarray profiling of microRNAs reveals frequent coex- pression with neighboring miRNAs and host genes
-
Baskerville, S. & Bartel, D.P. Microarray profiling of microRNAs reveals frequent coex- pression with neighboring miRNAs and host genes. RNA 11, 241-247 (2005).
-
(2005)
RNA
, vol.11
, pp. 241-247
-
-
Baskerville, S.1
Bartel, D.P.2
-
44
-
-
19944412146
-
MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues
-
Barad, O. et al. MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues. Genome Res. 14, 2486-2494 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 2486-2494
-
-
Barad, O.1
-
45
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116, 281-297 (2004).
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
46
-
-
31344438408
-
-
Hammond, S.M. microRNA detection comes of age
-
Hammond, S.M. microRNA detection comes of age. Nat. Methods 3, 12-3 (2006).
-
(2006)
Nat. Methods
, vol.3
, pp. 12-13
-
-
-
47
-
-
25444461163
-
Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method
-
Burgler, C. & Macdonald, P.M. Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method. BMC Genomics 6, 88 (2005).
-
(2005)
BMC Genomics
, vol.6
, pp. 88
-
-
Burgler, C.1
Macdonald, P.M.2
-
48
-
-
9144270691
-
A pancreatic islet-specific microRNA regulates insulin secretion
-
Poy, M.N. et al. A pancreatic islet-specific microRNA regulates insulin secretion. Nature 432, 226-230 (2004).
-
(2004)
Nature
, vol.432
, pp. 226-230
-
-
Poy, M.N.1
-
49
-
-
0942301280
-
The C. Elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3’ UTR
-
Vella, M.C. et al. The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3’ UTR. Genes Dev. 18, 132-137 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 132-137
-
-
Vella, M.C.1
|