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Volumn 49, Issue 2, 2009, Pages 461-476

Novel inhibitors of human histone deacetylase (HDAC) identified by QSAR modeling of known inhibitors, virtual screening, and experimental validation

Author keywords

[No Author keywords available]

Indexed keywords

CELL DEATH; CELL PROLIFERATION; DATABASE SYSTEMS; DIAGNOSIS; DIGITAL LIBRARIES; DISEASES; MOLECULAR GRAPHICS; NEAREST NEIGHBOR SEARCH; PREDICTIVE ANALYTICS; STATISTICAL TESTS; SUPPORT VECTOR MACHINES;

EID: 65249163549     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci800366f     Document Type: Article
Times cited : (94)

References (83)
  • 1
    • 0031244521 scopus 로고    scopus 로고
    • Nuclear histone acetylases and deacetylases and transcriptional regulation: HATs off to HDACs
    • Hassig, C. A.; Schreiber, S. L. Nuclear histone acetylases and deacetylases and transcriptional regulation: HATs off to HDACs. Curr. Opin. Chem. Biol. 1997, 1, 300-308.
    • (1997) Curr. Opin. Chem. Biol , vol.1 , pp. 300-308
    • Hassig, C.A.1    Schreiber, S.L.2
  • 2
    • 0029869172 scopus 로고    scopus 로고
    • Histone deacetylase: A regulator of transcription
    • Wolffe, A. P. Histone deacetylase: a regulator of transcription. Science 1996, 272, 371-372.
    • (1996) Science , vol.272 , pp. 371-372
    • Wolffe, A.P.1
  • 4
    • 15544383986 scopus 로고    scopus 로고
    • Mork, C. N.; Faller, D. V.; Spanjaard, R. A. A mechanistic approach to anticancer therapy: Targeting the cell cycle with histone deacetylase inhibitors. Curr. Pharm. Des 2005, 11, 1091-1104.
    • Mork, C. N.; Faller, D. V.; Spanjaard, R. A. A mechanistic approach to anticancer therapy: Targeting the cell cycle with histone deacetylase inhibitors. Curr. Pharm. Des 2005, 11, 1091-1104.
  • 5
    • 0842277812 scopus 로고    scopus 로고
    • Histone deacetylase (HDAC) inhibitor activation of p21WAFl involves changes in promoter-associated proteins, including HDAC1
    • Gui, C. Y.; Ngo, L.; Xu, W. S.; Richon, V. M.; Marks, P. A. Histone deacetylase (HDAC) inhibitor activation of p21WAFl involves changes in promoter-associated proteins, including HDAC1. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 1241-1246.
    • (2004) Proc. Natl. Acad. Sci. U.S.A , vol.101 , pp. 1241-1246
    • Gui, C.Y.1    Ngo, L.2    Xu, W.S.3    Richon, V.M.4    Marks, P.A.5
  • 6
    • 0036527775 scopus 로고    scopus 로고
    • Histone-deacetylase inhibitors: Novel drugs for the treatment of cancer
    • Johnstone, R. W. Histone-deacetylase inhibitors: novel drugs for the treatment of cancer. Nat. Rev. Drug Discovery 2002, 1, 287-299.
    • (2002) Nat. Rev. Drug Discovery , vol.1 , pp. 287-299
    • Johnstone, R.W.1
  • 7
    • 0041347519 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors in cancer therapy: Is transcription the primary target
    • Johnstone, R. W.; Licht, J. D. Histone deacetylase inhibitors in cancer therapy: is transcription the primary target. Cancer Cell 2003, 4, 13-18.
    • (2003) Cancer Cell , vol.4 , pp. 13-18
    • Johnstone, R.W.1    Licht, J.D.2
  • 8
    • 0035962650 scopus 로고    scopus 로고
    • Chromatin remodeling: Why it is important in cancer
    • Wolffe, A. P. Chromatin remodeling: why it is important in cancer. Oncogene 2001, 20, 2988-2990.
    • (2001) Oncogene , vol.20 , pp. 2988-2990
    • Wolffe, A.P.1
  • 10
    • 33646002067 scopus 로고    scopus 로고
    • Chemistry and biology of chromatin remodeling agents: State of art and future perspectives of HDAC inhibitors
    • Rodriquez, M.; Aquino, M.; Bruno, I.; De Martino, G.; Taddei, M.; Gomez-Paloma, L. Chemistry and biology of chromatin remodeling agents: state of art and future perspectives of HDAC inhibitors. Curr. Med. Chem. 2006, 13, 1119-1139.
    • (2006) Curr. Med. Chem , vol.13 , pp. 1119-1139
    • Rodriquez, M.1    Aquino, M.2    Bruno, I.3    De Martino, G.4    Taddei, M.5    Gomez-Paloma, L.6
  • 11
    • 0024996768 scopus 로고
    • Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A
    • Yoshida, M.; Kijima, M.; Akita, M.; Beppu, T. Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J. Biol. Chem. 1990, 265, 17174-17179.
    • (1990) J. Biol. Chem , vol.265 , pp. 17174-17179
    • Yoshida, M.1    Kijima, M.2    Akita, M.3    Beppu, T.4
  • 12
    • 0141988610 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors: The Abbott experience
    • Curtin, M.; Glaser, K. Histone deacetylase inhibitors: the Abbott experience. Curr. Med. Chem. 2003, 10, 2373-2392.
    • (2003) Curr. Med. Chem , vol.10 , pp. 2373-2392
    • Curtin, M.1    Glaser, K.2
  • 14
    • 27444435580 scopus 로고    scopus 로고
    • Toward selective histone deacetylase inhibitor design: Homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases
    • Wang, D. F.; Helquist, P.; Wiech, N. L.; Wiest, O. Toward selective histone deacetylase inhibitor design: homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases. J. Med. Chem. 2005, 48, 6936-6947.
    • (2005) J. Med. Chem , vol.48 , pp. 6936-6947
    • Wang, D.F.1    Helquist, P.2    Wiech, N.L.3    Wiest, O.4
  • 19
    • 1842578986 scopus 로고    scopus 로고
    • Molecular evolution of the histone deacetylase family: Functional implications of phylogenetic analysis
    • Gregoretti, I. V.; Lee, Y. M.; Goodson, H. V. Molecular evolution of the histone deacetylase family: Functional implications of phylogenetic analysis. J. Mol. Biol. 2004, 338, 17-31.
    • (2004) J. Mol. Biol , vol.338 , pp. 17-31
    • Gregoretti, I.V.1    Lee, Y.M.2    Goodson, H.V.3
  • 23
    • 33745356936 scopus 로고    scopus 로고
    • 3-D QSAR studies on histone deacetylase inhibitors. A GOLPE/GRID approach on different series of compounds
    • Ragno, R.; Simeoni, S.; Valente, S.; Massa, S.; Mai, A. 3-D QSAR studies on histone deacetylase inhibitors. A GOLPE/GRID approach on different series of compounds. J. Chem. Inf. Model. 2006, 46, 1420-1430.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 1420-1430
    • Ragno, R.1    Simeoni, S.2    Valente, S.3    Massa, S.4    Mai, A.5
  • 24
    • 36949022890 scopus 로고    scopus 로고
    • Predictive QSAR Modeling Workflow, Model Applicability Domains, and Virtual Screening
    • Tropsha, A.; Golbraikh, A. Predictive QSAR Modeling Workflow, Model Applicability Domains, and Virtual Screening. Curr. Pharm. Des. 2007, 13, 3494-3504.
    • (2007) Curr. Pharm. Des , vol.13 , pp. 3494-3504
    • Tropsha, A.1    Golbraikh, A.2
  • 26
    • 34347224016 scopus 로고    scopus 로고
    • Functional Differences in Epigenetic Modulators-Superiority of Mercaptoacetamide-Based Histone Deacetylase Inhibitors Relative to Hydroxamates in Cortical Neuron Neuroprotection Studies
    • Kozikowski, A. P.; Chen, Y.; Gaysin, A.; Chen, B.; D'Annibale, M. A.; Suto, C. M.; Langley, B. C. Functional Differences in Epigenetic Modulators-Superiority of Mercaptoacetamide-Based Histone Deacetylase Inhibitors Relative to Hydroxamates in Cortical Neuron Neuroprotection Studies. J. Med. Chem. 2007, 50, 3054-3061.
    • (2007) J. Med. Chem , vol.50 , pp. 3054-3061
    • Kozikowski, A.P.1    Chen, Y.2    Gaysin, A.3    Chen, B.4    D'Annibale, M.A.5    Suto, C.M.6    Langley, B.C.7
  • 28
    • 65249174779 scopus 로고    scopus 로고
    • Preparation of w-ureido alkanohydroxamic acid and related urea derivatives as histone deacetylase inhibitors
    • U.S. Pat. Appl. Publ. 2005014839, 2005
    • Kozikowski, A. P., Dritschilo, A., Jung, M., Petukhov, P. A., Chen, B. Preparation of w-ureido alkanohydroxamic acid and related urea derivatives as histone deacetylase inhibitors. U.S. Pat. Appl. Publ. 2005014839, 2005.
    • Kozikowski, A.P.1    Dritschilo, A.2    Jung, M.3    Petukhov, P.A.4    Chen, B.5
  • 29
    • 65249100959 scopus 로고    scopus 로고
    • Preparation of hydroxyamides and mercaptoacetamides as histone deacetylase inhibitors for treatment of neurological diseases and cancer
    • U. S. Pat. Appl. Publ. 2005032831, 2005
    • Kozikowski, A. P., Chen, B. Preparation of hydroxyamides and mercaptoacetamides as histone deacetylase inhibitors for treatment of neurological diseases and cancer. U. S. Pat. Appl. Publ. 2005032831, 2005.
    • Kozikowski, A.P.1    Chen, B.2
  • 31
    • 0029998412 scopus 로고    scopus 로고
    • Ohtani, M.; Matsuura, T.; Shirahase, K.; Sugita, K. (2E)-5-[3- [(phenylsulfonyl)amino]phenyl]-pent-2-en-4-ynohydroxamic acid and its derivatives as novel and potent inhibitors of ras transformation. J. Med. Chem. 1996, 39, 2871-2873.
    • Ohtani, M.; Matsuura, T.; Shirahase, K.; Sugita, K. (2E)-5-[3- [(phenylsulfonyl)amino]phenyl]-pent-2-en-4-ynohydroxamic acid and its derivatives as novel and potent inhibitors of ras transformation. J. Med. Chem. 1996, 39, 2871-2873.
  • 32
    • 0033523895 scopus 로고    scopus 로고
    • Amide analogues of trichostatin A as inhibitors of histone deacetylase and inducers of terminal cell differentiation
    • Jung, M.; Brosch, G.; Kolle, D.; Scherf, H.; Gerhauser, C.; Loidl, P. Amide analogues of trichostatin A as inhibitors of histone deacetylase and inducers of terminal cell differentiation. J. Med. Chem. 1999, 42, 4669-1679.
    • (1999) J. Med. Chem , vol.42 , pp. 4669-1679
    • Jung, M.1    Brosch, G.2    Kolle, D.3    Scherf, H.4    Gerhauser, C.5    Loidl, P.6
  • 35
    • 0026099706 scopus 로고
    • Novel Marine Sponge Derived Amino-Acids 0.13. Additional Psammaplin Derivatives from Psammaplysilla-Purpurea
    • Jimenez, C.; Crews, P. Novel Marine Sponge Derived Amino-Acids 0.13. Additional Psammaplin Derivatives from Psammaplysilla-Purpurea. Tetrahedron 1991, 47, 2097-2102.
    • (1991) Tetrahedron , vol.47 , pp. 2097-2102
    • Jimenez, C.1    Crews, P.2
  • 36
    • 13844312649 scopus 로고    scopus 로고
    • ZINC-a free database of commercially available compounds for virtual screening
    • Irwin, J. J.; Shoichet, B. K. ZINC-a free database of commercially available compounds for virtual screening. J. Chem. Inf. Model. 2005, 45, 177-182.
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 37
    • 84868931935 scopus 로고    scopus 로고
    • World Drug Index WDI
    • World Drug Index (WDI). http://www.daylight.com/products/wdi.html.
  • 38
    • 84868913192 scopus 로고    scopus 로고
    • accessed Jan 1,2006
    • Synergy Libraries, http://www.asinex.com/libraries-synergy.html (accessed Jan 1,2006).
    • Synergy Libraries
  • 39
    • 84868922004 scopus 로고    scopus 로고
    • accessed Jan 1,2007
    • InterBioScreen Libraries, http://www.ibscreen.com (accessed Jan 1,2007).
    • InterBioScreen Libraries
  • 40
    • 84868936272 scopus 로고    scopus 로고
    • accessed Jan 1,2006
    • Progenitor Databases, http://www.chemizon.com (accessed Jan 1,2006).
    • Progenitor Databases
  • 41
    • 65249163051 scopus 로고    scopus 로고
    • MolconnZ, version 4.05; eduSoft, LC: Ashland, VA, 2006
    • MolconnZ, version 4.05; eduSoft, LC: Ashland, VA, 2006.
  • 42
    • 8644280181 scopus 로고
    • On characterization on molecular branching
    • Randi, M. On characterization on molecular branching. J. Am. Chem. Soc. 1975, 97, 6609-6615.
    • (1975) J. Am. Chem. Soc , vol.97 , pp. 6609-6615
    • Randi, M.1
  • 46
    • 33846346097 scopus 로고
    • An index of electrotopological state of atoms in molecules
    • Kier, L. B.; Hall, L. H. An index of electrotopological state of atoms in molecules. J. Math. Chem. 1991, 7, 229.
    • (1991) J. Math. Chem , vol.7 , pp. 229
    • Kier, L.B.1    Hall, L.H.2
  • 47
    • 0025155575 scopus 로고
    • An electrotopological state index for atoms in molecules
    • Kier, L. B.; Hall, L. H. An electrotopological state index for atoms in molecules. Pharm. Res. 1990, 7, 801.
    • (1990) Pharm. Res , vol.7 , pp. 801
    • Kier, L.B.1    Hall, L.H.2
  • 48
    • 8544254107 scopus 로고
    • Structural determination of paraffin boiling points
    • Wiener, H. Structural determination of paraffin boiling points. J. Am. Chem. Soc. 1947, 69, 17-20.
    • (1947) J. Am. Chem. Soc , vol.69 , pp. 17-20
    • Wiener, H.1
  • 49
    • 0000697995 scopus 로고
    • Applications of the radius-diameter diagram to the classification of topological and geometrical shapes of chemical compounds
    • Petitjean, M. Applications of the radius-diameter diagram to the classification of topological and geometrical shapes of chemical compounds. J. Chem. Inf. Comput. Sci. 1992, 32, 331-337.
    • (1992) J. Chem. Inf. Comput. Sci , vol.32 , pp. 331-337
    • Petitjean, M.1
  • 50
    • 0000378338 scopus 로고    scopus 로고
    • Novel variable selection quantitative structure-property relationship approach based on the k-nearest-neighbor principle
    • Zheng, W.; Tropsha, A. Novel variable selection quantitative structure-property relationship approach based on the k-nearest-neighbor principle. J. Chem. Inf. Comput. Sci. 2000, 40, 185-194.
    • (2000) J. Chem. Inf. Comput. Sci , vol.40 , pp. 185-194
    • Zheng, W.1    Tropsha, A.2
  • 51
    • 65249097984 scopus 로고    scopus 로고
    • Molecular Operation Eenvironment, version 2006.08; Chemical Computing Group Inc.:Montreal, Quebec, Canada, 2006
    • Molecular Operation Eenvironment, version 2006.08; Chemical Computing Group Inc.:Montreal, Quebec, Canada, 2006.
  • 52
    • 33947441259 scopus 로고
    • Correlation of heats of isomerization, and differences in heats of vaporization of isomers, among the paraffin hydrocarbons
    • Wiener, H. Correlation of heats of isomerization, and differences in heats of vaporization of isomers, among the paraffin hydrocarbons. J. Am. Chem. Soc. 1947, 69, 2636-2638.
    • (1947) J. Am. Chem. Soc , vol.69 , pp. 2636-2638
    • Wiener, H.1
  • 53
    • 9444296174 scopus 로고
    • Highly discriminating distance-based topological index
    • Balaban, A. T. Highly discriminating distance-based topological index. Chem. Phys. Lett. 1982, 89, 399-404.
    • (1982) Chem. Phys. Lett , vol.89 , pp. 399-404
    • Balaban, A.T.1
  • 54
    • 0000569170 scopus 로고
    • Five new topological indices for the branching of treelike graphs
    • Balaban, A. T. Five new topological indices for the branching of treelike graphs. Theor. Chim. Acta 1979, 53, 355-375.
    • (1979) Theor. Chim. Acta , vol.53 , pp. 355-375
    • Balaban, A.T.1
  • 55
    • 49149147973 scopus 로고
    • Iterative partial equalization of orbital electronegativity - A rapid access to atomic charges
    • Gasteiger, J.; Marsili, M. Iterative partial equalization of orbital electronegativity - A rapid access to atomic charges. Tetrahedron 1980, 36, 3219-3228.
    • (1980) Tetrahedron , vol.36 , pp. 3219-3228
    • Gasteiger, J.1    Marsili, M.2
  • 56
    • 10344253046 scopus 로고
    • Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies
    • Stanton, D.; Jurs, P. Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies. Anal. Chem. 1990, 62, 2323-2329.
    • (1990) Anal. Chem , vol.62 , pp. 2323-2329
    • Stanton, D.1    Jurs, P.2
  • 57
    • 0036589313 scopus 로고    scopus 로고
    • Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection
    • Golbraikh, A.; Tropsha, A. Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection. J. Comput.-Aided Mol. Des 2002, 16, 357-369.
    • (2002) J. Comput.-Aided Mol. Des , vol.16 , pp. 357-369
    • Golbraikh, A.1    Tropsha, A.2
  • 58
    • 0042355453 scopus 로고    scopus 로고
    • Rational selection of training and test sets for the development of validated QSAR models
    • Golbraikh, A.; Shen, M.; Xiao, Z.; Xiao, Y. D.; Lee, K. H.; Tropsha, A. Rational selection of training and test sets for the development of validated QSAR models. J. Comput.-Aided Mol. Des 2003, 17, 241-253.
    • (2003) J. Comput.-Aided Mol. Des , vol.17 , pp. 241-253
    • Golbraikh, A.1    Shen, M.2    Xiao, Z.3    Xiao, Y.D.4    Lee, K.H.5    Tropsha, A.6
  • 60
    • 0035003411 scopus 로고    scopus 로고
    • Identification of the descriptor pharmacophores using variable selection QSAR: Applications to database mining
    • Tropsha, A.; Zhang, W. F. Identification of the descriptor pharmacophores using variable selection QSAR: Applications to database mining. Curr. Pharm. Des. 2001, 7, 599-612.
    • (2001) Curr. Pharm. Des , vol.7 , pp. 599-612
    • Tropsha, A.1    Zhang, W.F.2
  • 62
    • 28544437675 scopus 로고    scopus 로고
    • Application of validated QSAR models of Dl dopaminergic antagonists for database mining
    • Oloff, S.; Mailman, R. B.; Tropsha, A. Application of validated QSAR models of Dl dopaminergic antagonists for database mining. J. Med. Chem. 2005, 48, 7322-7332.
    • (2005) J. Med. Chem , vol.48 , pp. 7322-7332
    • Oloff, S.1    Mailman, R.B.2    Tropsha, A.3
  • 63
    • 11144354205 scopus 로고    scopus 로고
    • Application of predictive QSAR models to database mining: Identification and experimental validation of novel anticonvulsant compounds
    • Shen, M.; Beguin, C.; Golbraikh, A.; Stables, J. P.; Kohn, H.; Tropsha, A. Application of predictive QSAR models to database mining: identification and experimental validation of novel anticonvulsant compounds. J. Med. Chem. 2004, 47, 2356-2364.
    • (2004) J. Med. Chem , vol.47 , pp. 2356-2364
    • Shen, M.1    Beguin, C.2    Golbraikh, A.3    Stables, J.P.4    Kohn, H.5    Tropsha, A.6
  • 64
    • 11244352554 scopus 로고    scopus 로고
    • Karatzoglou, A.; Smola, A.; Hornik, K.; Zeileis, A. kernlab - An S4 package for kernel methods in R. J Stat. Software 2004, 11, 1-20.
    • Karatzoglou, A.; Smola, A.; Hornik, K.; Zeileis, A. kernlab - An S4 package for kernel methods in R. J Stat. Software 2004, 11, 1-20.
  • 65
    • 1842607847 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing: Vienna
    • R Development Core Team. R: A Language and Environment for Statistical Computing; R Foundation for Statistical Computing: Vienna, 2004.
    • (2004) R: A Language and Environment for Statistical Computing
  • 67
    • 33845352185 scopus 로고    scopus 로고
    • QSAR modeling of human serum protein binding with several modeling techniques utilizing structure-information representation
    • Votano, J. R.; Parham, M.; Hall, L. M.; Hall, L. H.; Kier, L. B.; Oloff, S.; Tropsha, A. QSAR modeling of human serum protein binding with several modeling techniques utilizing structure-information representation. J. Med. Chem. 2006, 49, 7169-7181.
    • (2006) J. Med. Chem , vol.49 , pp. 7169-7181
    • Votano, J.R.1    Parham, M.2    Hall, L.M.3    Hall, L.H.4    Kier, L.B.5    Oloff, S.6    Tropsha, A.7
  • 68
    • 33750321978 scopus 로고    scopus 로고
    • A novel automated lazy learning QSAR (ALL-QSAR) approach: Method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models
    • Zhang, S. X.; Golbraikh, A.; Oloff, S.; Kohn, H.; Tropsha, A. A novel automated lazy learning QSAR (ALL-QSAR) approach: Method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models. J. Chem. Inf. Model. 2006, 46, 1984-1995.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 1984-1995
    • Zhang, S.X.1    Golbraikh, A.2    Oloff, S.3    Kohn, H.4    Tropsha, A.5
  • 71
    • 1642493645 scopus 로고    scopus 로고
    • QSAR studies of PC-3 cell line inhibition activity of TSA and SAHA-like hydroxamic acids
    • Wang, D. F.; Wiest, O.; Helquist, P.; Lan-Hargest, H. Y.; Wiech, N. L. QSAR studies of PC-3 cell line inhibition activity of TSA and SAHA-like hydroxamic acids. Bioorg. Med. Chem. Lett. 2004, 14, 707-711.
    • (2004) Bioorg. Med. Chem. Lett , vol.14 , pp. 707-711
    • Wang, D.F.1    Wiest, O.2    Helquist, P.3    Lan-Hargest, H.Y.4    Wiech, N.L.5
  • 72
    • 50249185933 scopus 로고    scopus 로고
    • Differentiation of AmpC beta-lactamase binders vs. decoys using classification kNN QSAR modeling and application of the QSAR classifier to virtual screening
    • Hsieh, J. H.; Wang, X. S.; Teotico, D.; Golbraikh, A.; Tropsha, A. Differentiation of AmpC beta-lactamase binders vs. decoys using classification kNN QSAR modeling and application of the QSAR classifier to virtual screening. J. Comput.-Aided Mol. Des. 2008, 22, 593-609.
    • (2008) J. Comput.-Aided Mol. Des , vol.22 , pp. 593-609
    • Hsieh, J.H.1    Wang, X.S.2    Teotico, D.3    Golbraikh, A.4    Tropsha, A.5
  • 73
    • 26044447233 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship analysis of pyridinone HIV-1 reverse transcriptase inhibitors using the k nearest neighbor method and QSAR-based database mining
    • Medina-Franco, J. L.; Golbraikh, A.; Oloff, S.; Castillo, R.; Tropsha, A. Quantitative structure-activity relationship analysis of pyridinone HIV-1 reverse transcriptase inhibitors using the k nearest neighbor method and QSAR-based database mining. J Comput.-Aided Mol. Des 2005, 19, 229-242.
    • (2005) J Comput.-Aided Mol. Des , vol.19 , pp. 229-242
    • Medina-Franco, J.L.1    Golbraikh, A.2    Oloff, S.3    Castillo, R.4    Tropsha, A.5
  • 74
    • 0037142302 scopus 로고    scopus 로고
    • Quantitative structure - activity relationship analysis of function-alized amino acid anticonvulsant agents using k nearest neighbor and simulated annealing PLS methods
    • Shen, M.; LeTiran, A.; Xiao, Y.; Golbraikh, A.; Kohn, H.; Tropsha, A. Quantitative structure - activity relationship analysis of function-alized amino acid anticonvulsant agents using k nearest neighbor and simulated annealing PLS methods. J. Med. Chem. 2002, 45, 2811-2823.
    • (2002) J. Med. Chem , vol.45 , pp. 2811-2823
    • Shen, M.1    LeTiran, A.2    Xiao, Y.3    Golbraikh, A.4    Kohn, H.5    Tropsha, A.6
  • 75
    • 45749146722 scopus 로고    scopus 로고
    • Combinatorial QSAR modeling of specificity and subtype selectivity of ligands binding to serotonin receptors 5HT1E and 5HT1F
    • Wang, X. S.; Tang, H.; Golbraikh, A.; Tropsha, A. Combinatorial QSAR modeling of specificity and subtype selectivity of ligands binding to serotonin receptors 5HT1E and 5HT1F. J. Chem. Inf. Model 2008, 48, 997-1013.
    • (2008) J. Chem. Inf. Model , vol.48 , pp. 997-1013
    • Wang, X.S.1    Tang, H.2    Golbraikh, A.3    Tropsha, A.4
  • 76
    • 33947228423 scopus 로고    scopus 로고
    • Antitumor Agents 252. Application of validated QSAR models to database mining: Discovery of novel tylophorine derivatives as potential anticancer agents
    • Zhang, S.; Wei, L.; Bastow, K.; Zheng, W.; Brossi, A.; Lee, K. H.; Tropsha, A. Antitumor Agents 252. Application of validated QSAR models to database mining: discovery of novel tylophorine derivatives as potential anticancer agents. J. Comput.-Aided Mol. Des 2007, 21, 97-112.
    • (2007) J. Comput.-Aided Mol. Des , vol.21 , pp. 97-112
    • Zhang, S.1    Wei, L.2    Bastow, K.3    Zheng, W.4    Brossi, A.5    Lee, K.H.6    Tropsha, A.7
  • 77
    • 33644668387 scopus 로고    scopus 로고
    • Finding new tricks for old drugs: An efficient route for public-sector drug discovery
    • O'Connor, K. A.; Roth, B. L. Finding new tricks for old drugs: An efficient route for public-sector drug discovery. Nat. Rev. Drug Discovery 2005, 4, 1005-1014.
    • (2005) Nat. Rev. Drug Discovery , vol.4 , pp. 1005-1014
    • O'Connor, K.A.1    Roth, B.L.2
  • 78
    • 40649097784 scopus 로고    scopus 로고
    • Identification of ligand features essential for HDACs inhibitors by pharmacophore modeling
    • Chen, Y. D.; Jiang, Y. J.; Zhou, J. W.; Yu, Q. S.; You, Q. D. Identification of ligand features essential for HDACs inhibitors by pharmacophore modeling. J. Mol. Graph. Modell. 2008, 26, 1160-1168.
    • (2008) J. Mol. Graph. Modell , vol.26 , pp. 1160-1168
    • Chen, Y.D.1    Jiang, Y.J.2    Zhou, J.W.3    Yu, Q.S.4    You, Q.D.5
  • 79
    • 45749114198 scopus 로고    scopus 로고
    • Chemistry, biology, and QSAR studies of substituted biaryl hydroxamates and mercaptoacetamides as HDAC inhibitors-nanomolar-potency inhibitors of pancreatic cancer cell growth
    • Kozikowski, A. P.; Chen, Y.; Gaysin, A. M.; Savoy, D. N.; Billadeau, D. D.; Kim, K. H. Chemistry, biology, and QSAR studies of substituted biaryl hydroxamates and mercaptoacetamides as HDAC inhibitors-nanomolar-potency inhibitors of pancreatic cancer cell growth. ChemMed-Chem. 2008, 3, 487-501.
    • (2008) ChemMed-Chem , vol.3 , pp. 487-501
    • Kozikowski, A.P.1    Chen, Y.2    Gaysin, A.M.3    Savoy, D.N.4    Billadeau, D.D.5    Kim, K.H.6
  • 80
    • 40049110686 scopus 로고    scopus 로고
    • Class II-selective histone deacetylase inhibitors. Part 2: Alignment-independent GRIND 3-D QSAR, homology and docking studies
    • Ragno, R.; Simeoni, S.; Rotili, D.; Caroli, A.; Botta, G.; Brosch, G.; Massa, S.; Mai, A. Class II-selective histone deacetylase inhibitors. Part 2: alignment-independent GRIND 3-D QSAR, homology and docking studies. Eur. J. Med. Chem. 2008, 43, 621-632.
    • (2008) Eur. J. Med. Chem , vol.43 , pp. 621-632
    • Ragno, R.1    Simeoni, S.2    Rotili, D.3    Caroli, A.4    Botta, G.5    Brosch, G.6    Massa, S.7    Mai, A.8
  • 81
    • 23644454402 scopus 로고    scopus 로고
    • Exploration of a binding mode of indole amide analogues as potent histone deacetylase inhibitors and 3D-QSAR analyses
    • Guo, Y.; Xiao, J.; Guo, Z.; Chu, F.; Cheng, Y.; Wu, S. Exploration of a binding mode of indole amide analogues as potent histone deacetylase inhibitors and 3D-QSAR analyses. Bioorg. Med. Chem. 2005, 13, 5424-5434.
    • (2005) Bioorg. Med. Chem , vol.13 , pp. 5424-5434
    • Guo, Y.1    Xiao, J.2    Guo, Z.3    Chu, F.4    Cheng, Y.5    Wu, S.6
  • 82
    • 34247499108 scopus 로고    scopus 로고
    • 3D-QS AR of histone deacetylase inhibitors as anticancer agents by genetic function approximation
    • Wagh, N. K.; Deokar, H. S.; Juvale, D. C.; Kadam, S. S.; Kulkarni, V. M. 3D-QS AR of histone deacetylase inhibitors as anticancer agents by genetic function approximation. Indian J. Biochem. Biophys 2006, 43, 360-371.
    • (2006) Indian J. Biochem. Biophys , vol.43 , pp. 360-371
    • Wagh, N.K.1    Deokar, H.S.2    Juvale, D.C.3    Kadam, S.S.4    Kulkarni, V.M.5


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