-
1
-
-
1942443733
-
Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
-
Acinas S.G., Marcelino L.A., Klepac-Ceraj V., and Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186 (2004) 2629-2635
-
(2004)
J Bacteriol
, vol.186
, pp. 2629-2635
-
-
Acinas, S.G.1
Marcelino, L.A.2
Klepac-Ceraj, V.3
Polz, M.F.4
-
2
-
-
38349138542
-
Evaluation of Bacteroides markers for the detection of human faecal pollution
-
Ahmed W., Stewart J., Powell D., and Gardner T. Evaluation of Bacteroides markers for the detection of human faecal pollution. Lett Appl Microbiol 46 (2008) 237-242
-
(2008)
Lett Appl Microbiol
, vol.46
, pp. 237-242
-
-
Ahmed, W.1
Stewart, J.2
Powell, D.3
Gardner, T.4
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J Mol Biol 215 (1990) 403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
4744365810
-
Integrated approaches for detection of plant pathogenic bacteria and diagnosis of bacterial diseases
-
Alvarez A.M. Integrated approaches for detection of plant pathogenic bacteria and diagnosis of bacterial diseases. Annu Rev Phytopathol 42 (2004) 339-366
-
(2004)
Annu Rev Phytopathol
, vol.42
, pp. 339-366
-
-
Alvarez, A.M.1
-
5
-
-
0035370087
-
The identification of microorganisms by fluorescence in situ hybridisation
-
Amann R., Fuchs B.M., and Behrens S. The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12 (2001) 231-236
-
(2001)
Curr Opin Biotechnol
, vol.12
, pp. 231-236
-
-
Amann, R.1
Fuchs, B.M.2
Behrens, S.3
-
6
-
-
37349080869
-
Exhaustive computational identification of pathogen sequences far-distant from background genomes: identification and experimental verification of human-blind dengue PCR primers
-
Anez M., Putonti C., Fox G.E., Fofanov Y., and Willson R.C. Exhaustive computational identification of pathogen sequences far-distant from background genomes: identification and experimental verification of human-blind dengue PCR primers. J Biotechnol 133 (2008) 267-276
-
(2008)
J Biotechnol
, vol.133
, pp. 267-276
-
-
Anez, M.1
Putonti, C.2
Fox, G.E.3
Fofanov, Y.4
Willson, R.C.5
-
7
-
-
65049084945
-
Biochemical profile-based microbial identification systems
-
Tang Y.W., and Stratton C.W. (Eds), Springer Science+Business Media, LLC, New York, USA
-
Aslanzadeh J. Biochemical profile-based microbial identification systems. In: Tang Y.W., and Stratton C.W. (Eds). Advanced techniques in diagnostic microbiology (2006), Springer Science+Business Media, LLC, New York, USA 84-116
-
(2006)
Advanced techniques in diagnostic microbiology
, pp. 84-116
-
-
Aslanzadeh, J.1
-
8
-
-
33644847226
-
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
-
Bai X., Zhang J., Ewing A., Miller S.A., Jancso Radek A., Shevchenko D.V., et al. Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 188 (2006) 3682-3696
-
(2006)
J Bacteriol
, vol.188
, pp. 3682-3696
-
-
Bai, X.1
Zhang, J.2
Ewing, A.3
Miller, S.A.4
Jancso Radek, A.5
Shevchenko, D.V.6
-
9
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
Baker G.C., Smith J.J., and Cowan D.A. Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55 (2003) 541-555
-
(2003)
J Microbiol Meth
, vol.55
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
10
-
-
34848834775
-
A novel multiplex PCR for the identification of Vibrio parahaemolyticus, Vibrio cholerae and Vibrio vulnificus
-
Bauer A., and Rorvik L.M. A novel multiplex PCR for the identification of Vibrio parahaemolyticus, Vibrio cholerae and Vibrio vulnificus. Lett Appl Microbiol 45 (2007) 371-375
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 371-375
-
-
Bauer, A.1
Rorvik, L.M.2
-
11
-
-
0036378217
-
Amplification of RNA by NASBA allows direct detection of viable cells of Ralstonia solanacearum in potato
-
Bentsink L., Leone G.O.M., van Beckhoven J., van Schijndel H.B., van Gemen B., and van der Wolf J.M. Amplification of RNA by NASBA allows direct detection of viable cells of Ralstonia solanacearum in potato. J Appl Microbiol 93 (2002) 647-655
-
(2002)
J Appl Microbiol
, vol.93
, pp. 647-655
-
-
Bentsink, L.1
Leone, G.O.M.2
van Beckhoven, J.3
van Schijndel, H.B.4
van Gemen, B.5
van der Wolf, J.M.6
-
12
-
-
34347390012
-
Application of FISH technology for microbiological analysis: current state and prospects
-
Bottari B., Ercolini D., Gatti M., and Neviani E. Application of FISH technology for microbiological analysis: current state and prospects. Appl Microbiol Biotechnol 73 (2006) 485-494
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, pp. 485-494
-
-
Bottari, B.1
Ercolini, D.2
Gatti, M.3
Neviani, E.4
-
13
-
-
65049091118
-
Rapid antigen tests
-
Tang Y.W., and Stratton C.W. (Eds), Springer Science+Business Media, LLC, New York, USA
-
Campbell S., and Landry M.L. Rapid antigen tests. In: Tang Y.W., and Stratton C.W. (Eds). Advanced techniques in diagnostic microbiology (2006), Springer Science+Business Media, LLC, New York, USA 23-41
-
(2006)
Advanced techniques in diagnostic microbiology
, pp. 23-41
-
-
Campbell, S.1
Landry, M.L.2
-
14
-
-
36348995417
-
DNA extraction method affects microbial community profiles from soils and sediment
-
Carrigg C., Rice O., Kavanagh S., Collins G., and O'Flaherty V. DNA extraction method affects microbial community profiles from soils and sediment. Appl Microbiol Biotechnol 77 (2007) 955-964
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 955-964
-
-
Carrigg, C.1
Rice, O.2
Kavanagh, S.3
Collins, G.4
O'Flaherty, V.5
-
15
-
-
0142060219
-
A new and sensitive co-operational polymerase chain reaction for rapid detection of Ralstonia solanacearum in water
-
Caruso P., Bertolini E., Cambra M., and Lopez M.M. A new and sensitive co-operational polymerase chain reaction for rapid detection of Ralstonia solanacearum in water. J Microbiol Methods 55 (2003) 257-272
-
(2003)
J Microbiol Methods
, vol.55
, pp. 257-272
-
-
Caruso, P.1
Bertolini, E.2
Cambra, M.3
Lopez, M.M.4
-
16
-
-
1542269688
-
A nested-PCR assay for detection of Xylella fastidiosa in citrus plants and sharpshooter leafhoppers
-
Ciapina L.P., Alves L.M.C., and Lemos E.G.M. A nested-PCR assay for detection of Xylella fastidiosa in citrus plants and sharpshooter leafhoppers. J Appl Microbiol 96 (2004) 546-551
-
(2004)
J Appl Microbiol
, vol.96
, pp. 546-551
-
-
Ciapina, L.P.1
Alves, L.M.C.2
Lemos, E.G.M.3
-
17
-
-
0242552653
-
Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes
-
Coenye T., and Vandamme P. Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes. FEMS Microbiol Lett 228 (2003) 45-49
-
(2003)
FEMS Microbiol Lett
, vol.228
, pp. 45-49
-
-
Coenye, T.1
Vandamme, P.2
-
18
-
-
0035931926
-
Massive gene decay in the leprosy bacillus
-
Cole S.T., Eiglmeier K., Parkhill J., James K.D., Thomson N.R., Wheeler P.R., et al. Massive gene decay in the leprosy bacillus. Nature 409 (2001) 1007-1011
-
(2001)
Nature
, vol.409
, pp. 1007-1011
-
-
Cole, S.T.1
Eiglmeier, K.2
Parkhill, J.3
James, K.D.4
Thomson, N.R.5
Wheeler, P.R.6
-
19
-
-
33645114025
-
Primers based on the rpf gene region provide improved detection of Xanthomonas axonopodis pv. citri in naturally and artificially infected citrus plants
-
Coletta H.D., Takita M.A., de Souza A.A., Neto J.R., Destefano S.A.L., Hartung J.S., et al. Primers based on the rpf gene region provide improved detection of Xanthomonas axonopodis pv. citri in naturally and artificially infected citrus plants. J Appl Microbiol 100 (2006) 279-285
-
(2006)
J Appl Microbiol
, vol.100
, pp. 279-285
-
-
Coletta, H.D.1
Takita, M.A.2
de Souza, A.A.3
Neto, J.R.4
Destefano, S.A.L.5
Hartung, J.S.6
-
20
-
-
34447618391
-
Detection of Chlamydiaceae DNA in veterinary specimens using a family-specific PCR
-
Condon K., and Oakey J. Detection of Chlamydiaceae DNA in veterinary specimens using a family-specific PCR. Lett Appl Microbiol 45 (2007) 121-127
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 121-127
-
-
Condon, K.1
Oakey, J.2
-
21
-
-
0037401027
-
The use of NASBA for the detection of microbial pathogens in food and environmental samples
-
Cook N. The use of NASBA for the detection of microbial pathogens in food and environmental samples. J Microbiol Methods 53 (2003) 165-174
-
(2003)
J Microbiol Methods
, vol.53
, pp. 165-174
-
-
Cook, N.1
-
22
-
-
27744537835
-
Use of resequencing oligonucleotide microarrays for identification of Streptococcus pyogenes and associated antibiotic resistance determinants
-
Davignon L., Walter E.A., Mueller K.M., Barrozo C.P., Stenger D.A., and Lin B.C. Use of resequencing oligonucleotide microarrays for identification of Streptococcus pyogenes and associated antibiotic resistance determinants. J Clin Microbiol 43 (2005) 5690-5695
-
(2005)
J Clin Microbiol
, vol.43
, pp. 5690-5695
-
-
Davignon, L.1
Walter, E.A.2
Mueller, K.M.3
Barrozo, C.P.4
Stenger, D.A.5
Lin, B.C.6
-
23
-
-
15944408885
-
Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats
-
Altman R.B. (Ed)
-
Draghici S., Khatri P., Liu Y., Chase K.J., Bode E.A., Kulesh D.A., et al. Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats. In: Altman R.B. (Ed). Proceedings of the Pacific Symposium of Biocomputing 2005 Hawaii, USA (2005) 248-259
-
(2005)
Proceedings of the Pacific Symposium of Biocomputing 2005 Hawaii, USA
, pp. 248-259
-
-
Draghici, S.1
Khatri, P.2
Liu, Y.3
Chase, K.J.4
Bode, E.A.5
Kulesh, D.A.6
-
24
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg P.B., Bik E.M., Bernstein C.N., Purdom E., Dethlefsen L., Sargent M., et al. Diversity of the human intestinal microbial flora. Science 308 (2005) 1635-1638
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
-
25
-
-
33845415299
-
Multiple detection of food-borne pathogenic bacteria using a novel 16S rDNA-based oligonucleotide signature chip
-
Eom H.S., Hwang B.H., Kim D.H., Lee I.B., Kim Y.H., and Cha H.J. Multiple detection of food-borne pathogenic bacteria using a novel 16S rDNA-based oligonucleotide signature chip. Biosens Bioelectron 22 (2007) 845-853
-
(2007)
Biosens Bioelectron
, vol.22
, pp. 845-853
-
-
Eom, H.S.1
Hwang, B.H.2
Kim, D.H.3
Lee, I.B.4
Kim, Y.H.5
Cha, H.J.6
-
26
-
-
34547191211
-
Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content
-
Fazi S., Amalfitano S., Pizzetti H., and Pernthaler J. Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content. Syst Appl Microbiol 30 (2007) 463-470
-
(2007)
Syst Appl Microbiol
, vol.30
, pp. 463-470
-
-
Fazi, S.1
Amalfitano, S.2
Pizzetti, H.3
Pernthaler, J.4
-
27
-
-
0037372596
-
An oligonucleotide array for the identification and differentiation of bacteria pathogenic on potato
-
Fessehaie A., De Boer S.H., and Levesque C.A. An oligonucleotide array for the identification and differentiation of bacteria pathogenic on potato. Phytopathology 93 (2003) 262-269
-
(2003)
Phytopathology
, vol.93
, pp. 262-269
-
-
Fessehaie, A.1
De Boer, S.H.2
Levesque, C.A.3
-
28
-
-
33644876020
-
Pfam: clans, web tools and services
-
Finn R.D., Mistry J., Schuster-Bockler B., Griffiths-Jones S., Hollich V., Lassmann T., et al. Pfam: clans, web tools and services. Nucleic Acids Res 34 (2006) D247-D251
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
-
29
-
-
0345301960
-
Rapid development of nucleic acid diagnostics
-
Fitch J.P., Gardner S.N., Kuczmarski T.A., Kurtz S., Myers R., Ott L.L., et al. Rapid development of nucleic acid diagnostics. Proc IEEE 90 (2002) 1708-1721
-
(2002)
Proc IEEE
, vol.90
, pp. 1708-1721
-
-
Fitch, J.P.1
Gardner, S.N.2
Kuczmarski, T.A.3
Kurtz, S.4
Myers, R.5
Ott, L.L.6
-
30
-
-
33947669506
-
Rapid identification of Enterococcus italicus by PCR with primers targeted to 16S rRNA gene
-
Fortina M.G., Ricci G., Borgo F., and Manachini P.L. Rapid identification of Enterococcus italicus by PCR with primers targeted to 16S rRNA gene. Lett Appl Microbiol 44 (2007) 443-446
-
(2007)
Lett Appl Microbiol
, vol.44
, pp. 443-446
-
-
Fortina, M.G.1
Ricci, G.2
Borgo, F.3
Manachini, P.L.4
-
31
-
-
84869082106
-
Molecular strain typing using repetitive sequence-based PCR
-
Tang Y.W., and Stratton C.W. (Eds), New York, USA, Springer Science+Business Media, LLC
-
Frye S.R., and Healy M. Molecular strain typing using repetitive sequence-based PCR. In: Tang Y.W., and Stratton C.W. (Eds). Advanced techniques in diagnostic microbiology (2006), New York, USA, Springer Science+Business Media, LLC 444-472
-
(2006)
Advanced techniques in diagnostic microbiology
, pp. 444-472
-
-
Frye, S.R.1
Healy, M.2
-
32
-
-
38349190546
-
Detection and quantification of Prymnesium parvum (Haptophyceae) by real-time PCR
-
Galluzzi L., Bertozzini E., Penna A., Perini F., Pigalarga A., Graneli E., et al. Detection and quantification of Prymnesium parvum (Haptophyceae) by real-time PCR. Lett Appl Microbiol 46 (2008) 261-266
-
(2008)
Lett Appl Microbiol
, vol.46
, pp. 261-266
-
-
Galluzzi, L.1
Bertozzini, E.2
Penna, A.3
Perini, F.4
Pigalarga, A.5
Graneli, E.6
-
33
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill S.R., Pop M., DeBoy R.T., Eckburg P.B., Turnbaugh P.J., Samuel B.S., et al. Metagenomic analysis of the human distal gut microbiome. Science 312 (2006) 1355-1359
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
DeBoy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
-
34
-
-
20444472433
-
Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments
-
Gonzalez J.M., Portillo M.C., and Saiz-Jimenez C. Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments. Environ Microbiol 7 (2005) 1024-1028
-
(2005)
Environ Microbiol
, vol.7
, pp. 1024-1028
-
-
Gonzalez, J.M.1
Portillo, M.C.2
Saiz-Jimenez, C.3
-
35
-
-
0038215544
-
Specific detection of Pseudomonas spp. in milk by fluorescence in situ hybridization using ribosomal RNA directed probes
-
Gunasekera T.S., Dorsch M.R., Slade M.B., and Veal D.A. Specific detection of Pseudomonas spp. in milk by fluorescence in situ hybridization using ribosomal RNA directed probes. J Appl Microbiol 94 (2003) 936-945
-
(2003)
J Appl Microbiol
, vol.94
, pp. 936-945
-
-
Gunasekera, T.S.1
Dorsch, M.R.2
Slade, M.B.3
Veal, D.A.4
-
36
-
-
4444304333
-
DNA microarrays and their potential applications for the detection of plant viruses, viroids, and phytoplasmas
-
Hadidi A., Czosnek H., and Barba M. DNA microarrays and their potential applications for the detection of plant viruses, viroids, and phytoplasmas. J Plant Pathol 86 (2004) 97-104
-
(2004)
J Plant Pathol
, vol.86
, pp. 97-104
-
-
Hadidi, A.1
Czosnek, H.2
Barba, M.3
-
38
-
-
44449129878
-
Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
-
Hongoh Y., Sharma V.K., Prakash T., Noda S., Taylor T.D., Kudo T., et al. Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell. Proc Natl Acad Sci U S A 105 (2008) 5555-5560
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5555-5560
-
-
Hongoh, Y.1
Sharma, V.K.2
Prakash, T.3
Noda, S.4
Taylor, T.D.5
Kudo, T.6
-
39
-
-
0031007571
-
Efficiency of the polymerase chain reaction amplification of the uid gene for detection of Escherichia coli in contaminated water
-
Iqbal S., Robinson J., Deere D., Saunders J.R., Edwards C., and Porter J. Efficiency of the polymerase chain reaction amplification of the uid gene for detection of Escherichia coli in contaminated water. Lett Appl Microbiol 24 (1997) 498-502
-
(1997)
Lett Appl Microbiol
, vol.24
, pp. 498-502
-
-
Iqbal, S.1
Robinson, J.2
Deere, D.3
Saunders, J.R.4
Edwards, C.5
Porter, J.6
-
40
-
-
33749045848
-
Detection and identification of intestinal pathogens in clinical specimens using DNA microarrays
-
Jin D.Z., Wen S.Y., Chen S.H., Lin F., and Wang S.Q. Detection and identification of intestinal pathogens in clinical specimens using DNA microarrays. Mol Cell Probes 20 (2006) 337-347
-
(2006)
Mol Cell Probes
, vol.20
, pp. 337-347
-
-
Jin, D.Z.1
Wen, S.Y.2
Chen, S.H.3
Lin, F.4
Wang, S.Q.5
-
41
-
-
34848926826
-
Novel PCR assay for identification of Salmonella enterica serovar Infantis
-
Kardos G., Farkas T., Antal M., Nogrady N., and Kiss I. Novel PCR assay for identification of Salmonella enterica serovar Infantis. Lett Appl Microbiol 45 (2007) 421-425
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 421-425
-
-
Kardos, G.1
Farkas, T.2
Antal, M.3
Nogrady, N.4
Kiss, I.5
-
42
-
-
35448933702
-
Listeria monocytogenes in spontaneous abortions in humans and its detection by multiplex PCR
-
Kaur S., Malik S.V.S., Vaidya V.M., and Barbuddhe S.B. Listeria monocytogenes in spontaneous abortions in humans and its detection by multiplex PCR. J Appl Microbiol 103 (2007) 1889-1896
-
(2007)
J Appl Microbiol
, vol.103
, pp. 1889-1896
-
-
Kaur, S.1
Malik, S.V.S.2
Vaidya, V.M.3
Barbuddhe, S.B.4
-
43
-
-
36549024988
-
Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region
-
Khan I.U.H., and Edge T.A. Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region. J Appl Microbiol 103 (2007) 2561-2569
-
(2007)
J Appl Microbiol
, vol.103
, pp. 2561-2569
-
-
Khan, I.U.H.1
Edge, T.A.2
-
44
-
-
3242731518
-
Methods of studying soil microbial diversity
-
Kirk J.L., Beaudette L.A., Hart M., Moutoglis P., Khironomos J.N., Lee H., et al. Methods of studying soil microbial diversity. J Microbiol Methods 58 (2004) 169-188
-
(2004)
J Microbiol Methods
, vol.58
, pp. 169-188
-
-
Kirk, J.L.1
Beaudette, L.A.2
Hart, M.3
Moutoglis, P.4
Khironomos, J.N.5
Lee, H.6
-
45
-
-
33645846940
-
Development of a highly sensitive nested-PCR method using a single closed tube for detection of Fusarium culmorum in cereal samples
-
Klemsdal S.S., and Elen O. Development of a highly sensitive nested-PCR method using a single closed tube for detection of Fusarium culmorum in cereal samples. Lett Appl Microbiol 42 (2006) 544-548
-
(2006)
Lett Appl Microbiol
, vol.42
, pp. 544-548
-
-
Klemsdal, S.S.1
Elen, O.2
-
46
-
-
0035987733
-
Rapid detection of six types of bacterial pathogens in marine waters by multiplex PCR
-
Kong R.Y.C., Lee S.K.Y., Law T.W.F., Law S.H.W., and Wu R.S.S. Rapid detection of six types of bacterial pathogens in marine waters by multiplex PCR. Water Res 36 (2002) 2802-2812
-
(2002)
Water Res
, vol.36
, pp. 2802-2812
-
-
Kong, R.Y.C.1
Lee, S.K.Y.2
Law, T.W.F.3
Law, S.H.W.4
Wu, R.S.S.5
-
47
-
-
34347324112
-
Optimization of DNA isolation from legume nodules
-
Krasova-Wade T., and Neyra M. Optimization of DNA isolation from legume nodules. Lett Appl Microbiol 45 (2007) 95-99
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 95-99
-
-
Krasova-Wade, T.1
Neyra, M.2
-
48
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K., Itoh T., Kuwahara T., Oshima K., Toh H., Toyoda A., et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14 (2007) 169-181
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
Toyoda, A.6
-
50
-
-
33845603602
-
Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
-
Lakay F.M., Botha A., and Prior B.A. Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils. J Appl Microbiol 102 (2007) 265-273
-
(2007)
J Appl Microbiol
, vol.102
, pp. 265-273
-
-
Lakay, F.M.1
Botha, A.2
Prior, B.A.3
-
51
-
-
33646368924
-
Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR
-
Lee D.Y., Shannon K., and Beaudette L.A. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR. J Microbiol Methods 65 (2006) 453-467
-
(2006)
J Microbiol Methods
, vol.65
, pp. 453-467
-
-
Lee, D.Y.1
Shannon, K.2
Beaudette, L.A.3
-
52
-
-
28044450594
-
Recent developments in pathogen detection arrays: Implications for fungal plant pathogens and use in practice
-
Lievens B., and Thomma B. Recent developments in pathogen detection arrays: Implications for fungal plant pathogens and use in practice. Phytopathology 95 (2005) 1374-1380
-
(2005)
Phytopathology
, vol.95
, pp. 1374-1380
-
-
Lievens, B.1
Thomma, B.2
-
53
-
-
33847047774
-
Using a resequencing microarray as a multiple respiratory pathogen detection assay
-
Lin B.C., Blaney K.M., Malanoski A.P., Ligler A.G., Schnur J.M., Metzgar D., et al. Using a resequencing microarray as a multiple respiratory pathogen detection assay. J Clin Microbiol 45 (2007) 443-452
-
(2007)
J Clin Microbiol
, vol.45
, pp. 443-452
-
-
Lin, B.C.1
Blaney, K.M.2
Malanoski, A.P.3
Ligler, A.G.4
Schnur, J.M.5
Metzgar, D.6
-
54
-
-
33645464302
-
Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays
-
Lin B.C., Wang Z., Vora G.J., Thornton J.A., Schnur J.M., Thach D.C., et al. Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays. Genome Res 16 (2006) 527-535
-
(2006)
Genome Res
, vol.16
, pp. 527-535
-
-
Lin, B.C.1
Wang, Z.2
Vora, G.J.3
Thornton, J.A.4
Schnur, J.M.5
Thach, D.C.6
-
55
-
-
0032722031
-
Competitive polymerase chain reaction for quantification of nonculturable Enterococcus faecalis cells in lake water
-
Lleo M.D., Tafi M.C., Signoretto C., Dal Cero C., and Canepari P. Competitive polymerase chain reaction for quantification of nonculturable Enterococcus faecalis cells in lake water. FEMS Microbiol Ecol 30 (1999) 345-353
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 345-353
-
-
Lleo, M.D.1
Tafi, M.C.2
Signoretto, C.3
Dal Cero, C.4
Canepari, P.5
-
56
-
-
0027998116
-
Bacterial phylogeny based on 16S and 23S ribosomal-RNA sequence-analysis
-
Ludwig W., and Schleifer K.H. Bacterial phylogeny based on 16S and 23S ribosomal-RNA sequence-analysis. Fems Microbiol Rev 15 (1994) 155-173
-
(1994)
Fems Microbiol Rev
, vol.15
, pp. 155-173
-
-
Ludwig, W.1
Schleifer, K.H.2
-
57
-
-
35448953695
-
Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains
-
Majtan T., Majtanova L., Timko J., and Majtan V. Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains. J Antimicrob Chemother 60 (2007) 937-946
-
(2007)
J Antimicrob Chemother
, vol.60
, pp. 937-946
-
-
Majtan, T.1
Majtanova, L.2
Timko, J.3
Majtan, V.4
-
58
-
-
0037804236
-
Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phylogeny and taxonomy
-
Marchandin H., Teyssier C., de Buochberg M.S., Jean-Pierre H., Carriere C., and Jumas-Bilak E. Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phylogeny and taxonomy. Microbiology-(UK) 149 (2003) 1493-1501
-
(2003)
Microbiology-(UK)
, vol.149
, pp. 1493-1501
-
-
Marchandin, H.1
Teyssier, C.2
de Buochberg, M.S.3
Jean-Pierre, H.4
Carriere, C.5
Jumas-Bilak, E.6
-
59
-
-
34250780068
-
A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer
-
Martens M., Weidner S., Linke B., de Vos P., Gillis M., and Willems A. A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer. Syst Appl Microbiol 30 (2007) 390-400
-
(2007)
Syst Appl Microbiol
, vol.30
, pp. 390-400
-
-
Martens, M.1
Weidner, S.2
Linke, B.3
de Vos, P.4
Gillis, M.5
Willems, A.6
-
60
-
-
28544448786
-
Computational identification of strain-, species- and genus-specific proteins
-
Mazumder R., Natale D.A., Murthy S., Thiagarajan R., and Wu C.H. Computational identification of strain-, species- and genus-specific proteins. BMC Bioinformatics 6 (2005) 9
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 9
-
-
Mazumder, R.1
Natale, D.A.2
Murthy, S.3
Thiagarajan, R.4
Wu, C.H.5
-
61
-
-
3142718885
-
Development and implementation of a parallel algorithm for the fast design of oligonucleotide probe sets for diagnostic DNA microarrays
-
Meier H., Krause A., Krautner M., and Bode A. Development and implementation of a parallel algorithm for the fast design of oligonucleotide probe sets for diagnostic DNA microarrays. Concurr Comput-Pract Exp 16 (2004) 873-893
-
(2004)
Concurr Comput-Pract Exp
, vol.16
, pp. 873-893
-
-
Meier, H.1
Krause, A.2
Krautner, M.3
Bode, A.4
-
62
-
-
0942279803
-
Evaluation of MPN method combined with PCR procedure for detection and enumeration of Vibrio parahaemolyticus in seafood
-
Miwa N., Nishio T., Arita Y., Kawamori F., Masuda T., and Akiyama M. Evaluation of MPN method combined with PCR procedure for detection and enumeration of Vibrio parahaemolyticus in seafood. J Food Hyg Soc Jpn 44 (2003) 289-293
-
(2003)
J Food Hyg Soc Jpn
, vol.44
, pp. 289-293
-
-
Miwa, N.1
Nishio, T.2
Arita, Y.3
Kawamori, F.4
Masuda, T.5
Akiyama, M.6
-
63
-
-
37449021541
-
Electrical DNA-chip-based identification of different species of the genus Kitasatospora
-
Moller R., Schuler T., Gunther S., Carlsohn M.R., Munder T., and Fritzsche W. Electrical DNA-chip-based identification of different species of the genus Kitasatospora. Appl Microbiol Biotechnol 77 (2008) 1181-1188
-
(2008)
Appl Microbiol Biotechnol
, vol.77
, pp. 1181-1188
-
-
Moller, R.1
Schuler, T.2
Gunther, S.3
Carlsohn, M.R.4
Munder, T.5
Fritzsche, W.6
-
64
-
-
33846281194
-
Real-time PCR method for Salmonella spp. targeting the stn gene
-
Moore M.M., and Feist M.D. Real-time PCR method for Salmonella spp. targeting the stn gene. J Appl Microbiol 102 (2007) 516-530
-
(2007)
J Appl Microbiol
, vol.102
, pp. 516-530
-
-
Moore, M.M.1
Feist, M.D.2
-
65
-
-
24944473090
-
Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains
-
Morandi A., Zhaxybayeva O., Gogarten J.P., and Graf J. Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains. J Bacteriol 187 (2005) 6561-6564
-
(2005)
J Bacteriol
, vol.187
, pp. 6561-6564
-
-
Morandi, A.1
Zhaxybayeva, O.2
Gogarten, J.P.3
Graf, J.4
-
66
-
-
33644748109
-
Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridization
-
Myers K.M., Gaba J., and Al-Khaldi S.F. Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridization. Mol Cell Probes 20 (2006) 71-80
-
(2006)
Mol Cell Probes
, vol.20
, pp. 71-80
-
-
Myers, K.M.1
Gaba, J.2
Al-Khaldi, S.F.3
-
67
-
-
34548159887
-
Detection of Helicobacter pylori in sewage and water using a new quantitative PCR method with SYBR (R) green
-
Nayak A.K., and Bose J.B. Detection of Helicobacter pylori in sewage and water using a new quantitative PCR method with SYBR (R) green. J Appl Microbiol 103 (2007) 1931-1941
-
(2007)
J Appl Microbiol
, vol.103
, pp. 1931-1941
-
-
Nayak, A.K.1
Bose, J.B.2
-
68
-
-
33745674743
-
Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes
-
Neuzil P., Zhang C.Y., Pipper J., Oh S., and Zhuo L. Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes. Nucleic Acids Res 34 (2006) 9
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 9
-
-
Neuzil, P.1
Zhang, C.Y.2
Pipper, J.3
Oh, S.4
Zhuo, L.5
-
69
-
-
34547579868
-
Genotypic microbial community profiling: a critical technical review
-
Nocker A., Burr M., and Camper A.K. Genotypic microbial community profiling: a critical technical review. Microb Ecol 54 (2007) 276-289
-
(2007)
Microb Ecol
, vol.54
, pp. 276-289
-
-
Nocker, A.1
Burr, M.2
Camper, A.K.3
-
70
-
-
17444407072
-
YODA: selecting signature oligonucleotides
-
Nordberg E.K. YODA: selecting signature oligonucleotides. Bioinformatics 21 (2005) 1365-1370
-
(2005)
Bioinformatics
, vol.21
, pp. 1365-1370
-
-
Nordberg, E.K.1
-
71
-
-
35748981474
-
Rapid real-time PCR detection of Listeria monocytogenes in enriched food samples based on the ssr A gene, a novel diagnostic target
-
O'Grady J., Sedano-Balbas S., Maher M., Smith T., and Barry T. Rapid real-time PCR detection of Listeria monocytogenes in enriched food samples based on the ssr A gene, a novel diagnostic target. Food Microbiol 25 (2008) 75-84
-
(2008)
Food Microbiol
, vol.25
, pp. 75-84
-
-
O'Grady, J.1
Sedano-Balbas, S.2
Maher, M.3
Smith, T.4
Barry, T.5
-
72
-
-
9144247750
-
Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
-
Oshima K., Kakizawa S., Nishigawa H., Jung H.Y., Wei W., Suzuki S., et al. Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nat Genet 36 (2004) 27-29
-
(2004)
Nat Genet
, vol.36
, pp. 27-29
-
-
Oshima, K.1
Kakizawa, S.2
Nishigawa, H.3
Jung, H.Y.4
Wei, W.5
Suzuki, S.6
-
73
-
-
34249736359
-
Comprehensive DNA signature discovery and validation
-
Phillippy A.M., Mason J.A., Ayanbule K., Sommer D.D., Taviani E., Huq A., et al. Comprehensive DNA signature discovery and validation. PLoS Comput Biol 3 (2007) 887-894
-
(2007)
PLoS Comput Biol
, vol.3
, pp. 887-894
-
-
Phillippy, A.M.1
Mason, J.A.2
Ayanbule, K.3
Sommer, D.D.4
Taviani, E.5
Huq, A.6
-
75
-
-
0036828524
-
Evaluation of procedures for reliable PCR detection of Ralstonia solanacearum in common natural substrates
-
Poussier S., Cheron J.J., Couteau A., and Luisetti J. Evaluation of procedures for reliable PCR detection of Ralstonia solanacearum in common natural substrates. J Microbiol Methods 51 (2002) 349-359
-
(2002)
J Microbiol Methods
, vol.51
, pp. 349-359
-
-
Poussier, S.1
Cheron, J.J.2
Couteau, A.3
Luisetti, J.4
-
76
-
-
35748932362
-
Effect of the mutation rate and background size on the quality of pathogen identification
-
Reed C., Fofanov V., Putonti C., Chumakov S., Slezak T., and Fofanov Y. Effect of the mutation rate and background size on the quality of pathogen identification. Bioinformatics 23 (2007) 2665-2671
-
(2007)
Bioinformatics
, vol.23
, pp. 2665-2671
-
-
Reed, C.1
Fofanov, V.2
Putonti, C.3
Chumakov, S.4
Slezak, T.5
Fofanov, Y.6
-
77
-
-
33947640155
-
A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area
-
Reischer G.H., Kasper D.C., Steinborn R., Farnleitner A.H., and Mach R.L. A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area. Lett Appl Microbiol 44 (2007) 351-356
-
(2007)
Lett Appl Microbiol
, vol.44
, pp. 351-356
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Farnleitner, A.H.4
Mach, R.L.5
-
78
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
-
Rozen S., and Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics methods and protocols: methods in molecular biology (2000), Humana Press, Totowa, NJ 365-386
-
(2000)
Bioinformatics methods and protocols: methods in molecular biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
79
-
-
34247579752
-
Alignment-independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space
-
Rudi K., Zimonja M., Kvenshagen B., Rugtveit J., Midtvedt T., and Eggesbo M. Alignment-independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space. Appl Environ Microbiol 73 (2007) 2727-2734
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2727-2734
-
-
Rudi, K.1
Zimonja, M.2
Kvenshagen, B.3
Rugtveit, J.4
Midtvedt, T.5
Eggesbo, M.6
-
80
-
-
33846311412
-
A high throughput membrane BIO-PCR technique for ultra-sensitive detection of Pseudomonas syringae pv. phaseolicola
-
Schaad N.W., Berthier-Schaad Y., and Knorr D. A high throughput membrane BIO-PCR technique for ultra-sensitive detection of Pseudomonas syringae pv. phaseolicola. Plant Pathol 56 (2007) 1-8
-
(2007)
Plant Pathol
, vol.56
, pp. 1-8
-
-
Schaad, N.W.1
Berthier-Schaad, Y.2
Knorr, D.3
-
81
-
-
0036759015
-
Real-time PCR and its application for rapid plant disease diagnostics
-
Schaad N.W., and Frederick R.D. Real-time PCR and its application for rapid plant disease diagnostics. Can J Plant Pathol-Rev Can Phytopathol 24 (2002) 250-258
-
(2002)
Can J Plant Pathol-Rev Can Phytopathol
, vol.24
, pp. 250-258
-
-
Schaad, N.W.1
Frederick, R.D.2
-
82
-
-
33746785061
-
Diagnostic microbial microarrays in soil ecology
-
Sessitsch A., Hackl E., Wenzl P., Kilian A., Kostic T., Stralis-Pavese N., et al. Diagnostic microbial microarrays in soil ecology. New Phytol 171 (2006) 719-736
-
(2006)
New Phytol
, vol.171
, pp. 719-736
-
-
Sessitsch, A.1
Hackl, E.2
Wenzl, P.3
Kilian, A.4
Kostic, T.5
Stralis-Pavese, N.6
-
84
-
-
33746709431
-
Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples
-
Siripong S., Kelly J.J., Stahl D.A., and Rittmann B.E. Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Environ Microbiol 8 (2006) 1564-1574
-
(2006)
Environ Microbiol
, vol.8
, pp. 1564-1574
-
-
Siripong, S.1
Kelly, J.J.2
Stahl, D.A.3
Rittmann, B.E.4
-
85
-
-
17744412936
-
Comparative genomics tools applied to bioterrorism defence
-
Slezak T., Kuczmarski T., Ott L., Torres C., Medeiros D., Smith J., et al. Comparative genomics tools applied to bioterrorism defence. Brief Bioinform 4 (2003) 133-149
-
(2003)
Brief Bioinform
, vol.4
, pp. 133-149
-
-
Slezak, T.1
Kuczmarski, T.2
Ott, L.3
Torres, C.4
Medeiros, D.5
Smith, J.6
-
86
-
-
33751009367
-
Quantification of methanogens by fluorescence in situ hybridization with oligonucleotide probe
-
Stabnikova O., Liu X.Y., Wang J.Y., and Ivanov V. Quantification of methanogens by fluorescence in situ hybridization with oligonucleotide probe. Appl Microbiol Biotechnol 73 (2006) 696-702
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, pp. 696-702
-
-
Stabnikova, O.1
Liu, X.Y.2
Wang, J.Y.3
Ivanov, V.4
-
87
-
-
38949108667
-
spa typing of Staphylococcus aureus as a frontline tool in epidemiological typing
-
Strommenger B., Braulke C., Heuck D., Schmidt C., Pasemann B., Nubel U., et al. spa typing of Staphylococcus aureus as a frontline tool in epidemiological typing. J Clin Microbiol 46 (2008) 574-581
-
(2008)
J Clin Microbiol
, vol.46
, pp. 574-581
-
-
Strommenger, B.1
Braulke, C.2
Heuck, D.3
Schmidt, C.4
Pasemann, B.5
Nubel, U.6
-
88
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
Strous M., Pelletier E., Mangenot S., Rattei T., Lehner A., Taylor M.W., et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440 (2006) 790-794
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
Taylor, M.W.6
-
89
-
-
33845912401
-
Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays
-
Tembe W., Zavaljevski N., Bode E., Chase C., Geyer J., Wasieloski L., et al. Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays. Bioinformatics 23 (2007) 5-13
-
(2007)
Bioinformatics
, vol.23
, pp. 5-13
-
-
Tembe, W.1
Zavaljevski, N.2
Bode, E.3
Chase, C.4
Geyer, J.5
Wasieloski, L.6
-
90
-
-
33751436704
-
PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
-
Thiyagarajan S., Karhanek M., Akhras M., Davis R.W., and Pourmand N. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens. BMC Bioinformatics 7 (2006) 10
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 10
-
-
Thiyagarajan, S.1
Karhanek, M.2
Akhras, M.3
Davis, R.W.4
Pourmand, N.5
-
91
-
-
36549047070
-
A simple multiplex PCR assay for diagnosing virulent Helicobacter pylori infection in human gastric biopsy specimens from subjects with gastric carcinoma and other gastro-duodenal diseases
-
Tiwari S.K., Khan A.A., Manoj G., Ahmed S., Abid Z., Habeeb A., et al. A simple multiplex PCR assay for diagnosing virulent Helicobacter pylori infection in human gastric biopsy specimens from subjects with gastric carcinoma and other gastro-duodenal diseases. J Appl Microbiol 103 (2007) 2353-2360
-
(2007)
J Appl Microbiol
, vol.103
, pp. 2353-2360
-
-
Tiwari, S.K.1
Khan, A.A.2
Manoj, G.3
Ahmed, S.4
Abid, Z.5
Habeeb, A.6
-
92
-
-
44349099865
-
Comparative genome analysis of "Candidatus phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB
-
Tran-Nguyen L.T.T., Kube M., Schneider B., Reinhardt R., and Gibb K.S. Comparative genome analysis of "Candidatus phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB. J Bacteriol 190 (2008) 3979-3991
-
(2008)
J Bacteriol
, vol.190
, pp. 3979-3991
-
-
Tran-Nguyen, L.T.T.1
Kube, M.2
Schneider, B.3
Reinhardt, R.4
Gibb, K.S.5
-
93
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 (2004) 37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
-
94
-
-
36549029251
-
Comparison of whole genome amplification methods for detecting pathogenic bacterial genomic DNA using microarray
-
Uda A., Tanabayashi K., Fujita O., Hotta A., Yamamoto Y., and Yamada A. Comparison of whole genome amplification methods for detecting pathogenic bacterial genomic DNA using microarray. Jpn J Infect Dis 60 (2007) 355-361
-
(2007)
Jpn J Infect Dis
, vol.60
, pp. 355-361
-
-
Uda, A.1
Tanabayashi, K.2
Fujita, O.3
Hotta, A.4
Yamamoto, Y.5
Yamada, A.6
-
95
-
-
33845663223
-
A rapid PCR procedure for the specific identification of Lactobacillus sanfranciscensis, based on the 16S-23S intergenic spacer regions
-
Valcheva R., Kabadjova P., Rachman C., Ivanova I., Onno B., Prevost H., et al. A rapid PCR procedure for the specific identification of Lactobacillus sanfranciscensis, based on the 16S-23S intergenic spacer regions. J Appl Microbiol 102 (2007) 290-302
-
(2007)
J Appl Microbiol
, vol.102
, pp. 290-302
-
-
Valcheva, R.1
Kabadjova, P.2
Rachman, C.3
Ivanova, I.4
Onno, B.5
Prevost, H.6
-
96
-
-
34548246397
-
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
-
van Belkum A., Tassios P.T., Dijkshoorn L., Haeggman S., Cookson B., Fry N.K., et al. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect 13 (2007) 1-46
-
(2007)
Clin Microbiol Infect
, vol.13
, pp. 1-46
-
-
van Belkum, A.1
Tassios, P.T.2
Dijkshoorn, L.3
Haeggman, S.4
Cookson, B.5
Fry, N.K.6
-
97
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rusch D., Eisen J.A., et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 (2004) 66-74
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
-
98
-
-
34247378304
-
A novel approach for the identification of bacterial taxa-specific molecular markers
-
Vieira J., Mendes M.V., Albuquerque P., Moradas-Ferreira P., and Tavares F. A novel approach for the identification of bacterial taxa-specific molecular markers. Lett Appl Microbiol 44 (2007) 506-512
-
(2007)
Lett Appl Microbiol
, vol.44
, pp. 506-512
-
-
Vieira, J.1
Mendes, M.V.2
Albuquerque, P.3
Moradas-Ferreira, P.4
Tavares, F.5
-
99
-
-
33745435063
-
Sequencing of the intergenic 16S-23S rRNA spacer (ITS) region of Mollicutes species and their identification using microarray-based assay and DNA sequencing
-
Volokhov D.V., George J., Liu S.X., Ikonomi P., Anderson C., and Chizhikov V. Sequencing of the intergenic 16S-23S rRNA spacer (ITS) region of Mollicutes species and their identification using microarray-based assay and DNA sequencing. Appl Microbiol Biotechnol 71 (2006) 680-698
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 680-698
-
-
Volokhov, D.V.1
George, J.2
Liu, S.X.3
Ikonomi, P.4
Anderson, C.5
Chizhikov, V.6
-
100
-
-
30044448339
-
Microarray-based detection of genetic heterogeneity, antimicrobial resistance, and the viable but nonculturable state in human pathogenic Vibrio spp
-
Vora G.J., Meador C.E., Bird M.M., Bopp C.A., Andreadis J.D., and Stenger D.A. Microarray-based detection of genetic heterogeneity, antimicrobial resistance, and the viable but nonculturable state in human pathogenic Vibrio spp. Proc Natl Acad Sci U S A 102 (2005) 19109-19114
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 19109-19114
-
-
Vora, G.J.1
Meador, C.E.2
Bird, M.M.3
Bopp, C.A.4
Andreadis, J.D.5
Stenger, D.A.6
-
101
-
-
34248179977
-
Unravelling microbial communities with DNA-microarrays: challenges and future directions
-
Wagner M., Smidt H., Loy A., and Zhou J.Z. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb Ecol 53 (2007) 498-506
-
(2007)
Microb Ecol
, vol.53
, pp. 498-506
-
-
Wagner, M.1
Smidt, H.2
Loy, A.3
Zhou, J.Z.4
-
102
-
-
34547599988
-
Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens
-
Wang X.W., Zhang L., Jin L.Q., Jin M., Shen Z.Q., An S., et al. Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens. Appl Microbiol Biotechnol 76 (2007) 225-233
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 225-233
-
-
Wang, X.W.1
Zhang, L.2
Jin, L.Q.3
Jin, M.4
Shen, Z.Q.5
An, S.6
-
103
-
-
9644291458
-
Multiplex PCR-DNA probe assay for the detection of pathogenic Escherichia coli
-
Watterworth L., Topp E., Schraft H., and Leung K.T. Multiplex PCR-DNA probe assay for the detection of pathogenic Escherichia coli. J Microbiol Methods 60 (2005) 93-105
-
(2005)
J Microbiol Methods
, vol.60
, pp. 93-105
-
-
Watterworth, L.1
Topp, E.2
Schraft, H.3
Leung, K.T.4
-
104
-
-
0033944701
-
Detection of Ralstonia solanacearum strains with a quantitative, multiplex, real-time, fluorogenic PCR (TaqMan) assay
-
Weller S.A., Elphinstone J.G., Smith N.C., Boonham N., and Stead D.E. Detection of Ralstonia solanacearum strains with a quantitative, multiplex, real-time, fluorogenic PCR (TaqMan) assay. Appl Environ Microbiol 66 (2000) 2853-2858
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2853-2858
-
-
Weller, S.A.1
Elphinstone, J.G.2
Smith, N.C.3
Boonham, N.4
Stead, D.E.5
-
105
-
-
0030748867
-
Inhibition and facilitation of nucleic acid amplification
-
Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63 (1997) 3741-3751
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3741-3751
-
-
Wilson, I.G.1
-
106
-
-
0031793337
-
Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes
-
Wullings B.A., van Beuningen A.R., Janse J.D., and Akkermans A.D.L. Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes. Appl Environ Microbiol 64 (1998) 4546-4554
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4546-4554
-
-
Wullings, B.A.1
van Beuningen, A.R.2
Janse, J.D.3
Akkermans, A.D.L.4
-
107
-
-
34848844948
-
Use of a novel multiplex probe array for rapid identification of Mycobacterium species from clinical isolates
-
Zhang S.L., Shen J.G., Shen G.H., Sun Z.Q., Xu P.H., Peng Y.L., et al. Use of a novel multiplex probe array for rapid identification of Mycobacterium species from clinical isolates. World J Microbiol Biotechnol 23 (2007) 1779-1788
-
(2007)
World J Microbiol Biotechnol
, vol.23
, pp. 1779-1788
-
-
Zhang, S.L.1
Shen, J.G.2
Shen, G.H.3
Sun, Z.Q.4
Xu, P.H.5
Peng, Y.L.6
-
108
-
-
33644776725
-
Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples
-
Zhang T., and Fang H.H.P. Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl Microbiol Biotechnol 70 (2006) 281-289
-
(2006)
Appl Microbiol Biotechnol
, vol.70
, pp. 281-289
-
-
Zhang, T.1
Fang, H.H.P.2
-
109
-
-
33846044584
-
MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
-
Zhou C.E., Smith J., Lam M., Zemla A., Dyer M.D., and Slezak T. MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res 35 (2007) D391-D394
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Zhou, C.E.1
Smith, J.2
Lam, M.3
Zemla, A.4
Dyer, M.D.5
Slezak, T.6
-
110
-
-
35448976530
-
Development of a SYBR Green I real-time PCR for quantitative detection of Vibrio alginolyticus in seawater and seafood
-
Zhou S., Hou Z., Li N., and Qin Q. Development of a SYBR Green I real-time PCR for quantitative detection of Vibrio alginolyticus in seawater and seafood. J Appl Microbiol 103 (2007) 1897-1906
-
(2007)
J Appl Microbiol
, vol.103
, pp. 1897-1906
-
-
Zhou, S.1
Hou, Z.2
Li, N.3
Qin, Q.4
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