Electrical DNA-chip-based identification of different species of the genus Kitasatospora

Applied Microbiology and Biotechnology

Volumn 77, Issue 5, 2008, Pages 1181-1188

  Möller, Robert ^c   Schüler, Thomas ^c   Günther, Sebastian ^b,d   Carlsohn, Marc René ^b   Munder, Thomas ^b,e   Fritzsche, Wolfgang ^a  

^a LEIBNIZ INSTITUTE OF PHOTONIC TECHNOLOGY   (Germany)

^b HANS KNÖLL INSTITUTE   (Germany)

^c FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^d FREIE UNIVERSITÄT BERLIN   (Germany)

^e CLONDIAG GmbH   (Germany)

Author keywords

16S 23S rDNA; DNA chip; Electrical readout; Gold nanoparticles; Kitasatospora

Indexed keywords

BIOCHIPS; BIODIVERSITY; CONCENTRATION (PROCESS); ELECTRIC CONDUCTIVITY; ELECTRODES; NANOPARTICLES;

DNA-CHIP; ELECTRICAL READOUT SCHEME; KITASATOSPORA; POLYMERASE CHAIN REACTION;

DNA;

DNA 16S; DNA 23S; ENZYME; GOLD; INTERNAL TRANSCRIBED SPACER; NANOPARTICLE; SILVER;

BACTERIUM; DETECTION METHOD; DNA; ELECTRICAL CONDUCTIVITY; ELECTRODE; EXPERIMENTAL STUDY; FUNGUS; GENETIC ANALYSIS; GOLD; IDENTIFICATION METHOD; POLYMERASE CHAIN REACTION; SILVER;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BINDING AFFINITY; BIOTINYLATION; CHEMICAL LABELING; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA DETERMINATION; DNA MICROARRAY; DNA SEQUENCE; ELECTRIC CONDUCTIVITY; ELECTRODE; GENUS; IMMOBILIZATION; KITASATOSPORA; MOLECULAR PROBE; NONHUMAN; POLYMERASE CHAIN REACTION; SPECIES IDENTIFICATION;

BACTERIOLOGICAL TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL SPACER; ELECTRIC CONDUCTIVITY; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; STAINING AND LABELING; STREPTOMYCETACEAE;

ACTINOBACTERIA (CLASS); KITASATOSPORA;

EID: 37449021541     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-1241-0     Document Type: Article

References (22)

1. Cheung VG, Morley M, Aguilar F, Massimi A, Kucherlapati R, Childs G (1999) Making and reading microarrays. Nat Genet 21(1 Suppl):15-19
2. Drummond TG, Hill MG, Barton JK (2003) Electrochemical DNA sensors. Nat Biotechnol 21(10):1192-1199
3. Fare TL, Coffey EM, Dai H, He YD, Kessler DA, Kilian KA, Koch JE, LeProust E, Marton MJ, Meyer MR, Stoughton RB, Tokiwa GY, Wang Y (2003) Effects of atmospheric ozone on microarray data quality. Anal Chem 75(17):4672-4675
4. Fritzsche W, Taton TA (2003) Metal Nanoparticles as Labels for Heterogeneous, Chip-Based DNA Detection. Nanotechnology 14:R63-R73
5. Günther S, Groth I, Grabley S, Munder T (2006) Design and evaluation of an oligonucleotide-microarray for the detection of different species of the genus Kitasatospora. J Microbiol Methods 65:226-236
6. Gurtler V, Stanisich VA (1996) New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142(Pt 1):3-16
7. Hacker GW, Graf AH, Hauser-Kronberger C, Wirnsberger G, Schiechl A, Bernatzky G, Wittauer U, Su HC, Adam H, Thurner J et al (1993) Application of silver acetate autometallography and gold-silver staining methods for in situ DNA hybridization. Chin Med J (Engl) 106(2):83-92
8. He L, Musick MD, Nicewarner SR, Salinas FG, Nekovic SJ, Natan MJ, Keating CD (2000) Colloidal Au-enhanced surface plasmon resonance for ultrasensitive detection of DNA hybridization. J Am Chem Soc 122:9071-9077
9. Li J, Xue M, Lu Z, Zhang Z, Feng L, Chan M (2003) A high-density conduction-based micro-DNA identification array fabricated with a CMOS compatible process. IEEE Trans Electron Devices 50(10):2165-2170
10. Möller R, Csaki A, Köhler JM, Fritzsche W (2000) DNA probes on chip surfaces studied by scanning force microscopy using specific binding of colloidal gold. Nucleic Acids Res 28:e91
11. Möller R, Csaki A, Köhler JM, Fritzsche W (2001) Electrical classification of the concentration of bioconjugated metal colloids after surface adsorption and silver enhancement. Langmuir 17:5426-5430
12. Möller R, Powell RD, Hainfeld JF, Fritzsche W (2005) Enzymatic control of metal deposition as key step for a low-background electrical detection for DNA chips. Nano Lett 5(7):1475-1482
13. Ochi K, Hiranuma H (1994) A taxonomic review of the genera Kitasatosporia and Streptoverticillium by analysis of ribosomal protein AT-L30. Int J Syst Bacteriol 44(2):285-292
14. Omura S, Takahashi Y, Iwai Y, Tanaka H (1982) Kitasatosporia, a new genus of the order Actinomycetales. J Antibiot (Tokyo) 35(8):1013-1019
15. Park SJ, Taton TA, Mirkin CA (2002) Array-based electrical detection of DNA with nanoparticle probes. Science 295(5559):1503-1506
16. Prauser H, Schütze B, Martin K (1987) IMET (National collection of microorganisms) catalogue of strains ZIMET, Jena
17. Schaupp CJ, Jiang G, Myers TG, Wilson MA (2005) Active mixing during hybridization improves the accuracy and reproducibility of microarray results. Biotechniques 38(1):117-119
18. Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW (1996) Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci U S A 93:10614-10619
19. Storhoff JJ, Elghanian R, Mucic RC, Mirkin CA, Letsinger RL (1998) One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. J Am Chem Soc 120:1959-1964
20. Urban M, Möller R, Fritzsche W (2003) A paralleled readout system for an electrical DNA-hybridization assay based on a microstructured electrode array. Rev Sci Instr 74:1077-1081
21. Wellington EM, Stackebrandt E, Sanders D, Wolstrup J, Jorgensen NO (1992) Taxonomic status of Kitasatosporia, and proposed unification with Streptomyces on the basis of phenotypic and 16S rRNA analysis and emendation of Streptomyces Waksman and Henrici 1943, 339AL. Int J Syst Bacteriol 42(1):156-160
22. Zhang Z, Wang Y, Ruan J (1997) A proposal to revive the genus Kitasatospora (Omura, Takahashi, Iwai, and Tanaka 1982). Int J Syst Bacteriol 47(4):1048-1054