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Volumn 90, Issue 11, 2002, Pages 1708-1720

Rapid development of nucleic acid diagnostics

(10)  Fitch, J Patrick a,b,e,f   Gardner, Shea N b,g,h,i,j,k   Kuczmarski, Thomas A b   Kurtz, Stefan c,j   Myers, Rich d   Ott, Linda L b,c   Slezak, Thomas R b,l   Vitalis, Elizabeth A b   Zemla, Adam T b   Mccready, Paula M b  


Author keywords

Deoxyribonucleic acid (DNA); Diagnostics; Genomics; Nucleic acid; Ribonucleic acid (RNA); Suffix tree

Indexed keywords

BACTERIA; DIAGNOSIS; DISEASES; DNA; GENES; IMMUNOLOGY; PATHOLOGY; RNA; VIRUSES;

EID: 0345301960     PISSN: 00189219     EISSN: None     Source Type: Journal    
DOI: 10.1109/JPROC.2002.804680     Document Type: Article
Times cited : (33)

References (42)
  • 1
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • July 18
    • C. R. Woese, "Interpreting the universal phylogenetic tree," Proc. Nat. Acad. Sci. USA, vol. 97, no. 15, pp. 8392-8396, July 18, 2000.
    • (2000) Proc. Nat. Acad. Sci. USA , vol.97 , Issue.15 , pp. 8392-8396
    • Woese, C.R.1
  • 3
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Feb. 15
    • International Human Genome Sequencing Consortium, "Initial sequencing and analysis of the human genome," Nature, vol. 409, no. 6822, pp. 860-921, Feb. 15, 2001.
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
  • 4
    • 0000995715 scopus 로고    scopus 로고
    • Genomic engineering: Moving beyond DNA sequence to function
    • Dec.
    • J. P. Fitch and B. Sokhansanj, "Genomic engineering: Moving beyond DNA sequence to function," Proc. IEEE, vol. 88, pp. 1949-1971, Dec. 2000.
    • (2000) Proc. IEEE , vol.88 , pp. 1949-1971
    • Fitch, J.P.1    Sokhansanj, B.2
  • 8
    • 0029954443 scopus 로고    scopus 로고
    • Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA
    • May 28
    • M. A. Fountain, M. J. Serra, T. K. Krugh, and D. H. Turner, "Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA," Biochemistry, vol. 35, no. 21, pp. 6539-6548, May 28, 1996.
    • (1996) Biochemistry , vol.35 , Issue.21 , pp. 6539-6548
    • Fountain, M.A.1    Serra, M.J.2    Krugh, T.K.3    Turner, D.H.4
  • 9
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Dec.
    • F. Sanger, S. Nicklen, and A. R. Coulson, "DNA sequencing with chain-terminating inhibitors," Proc. Nat. Acad. Sci. USA, vol. 74, pp. 5463-5467, Dec. 1977.
    • (1977) Proc. Nat. Acad. Sci. USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 10
    • 0026075541 scopus 로고
    • Large-scale and automated DNA sequence determination
    • Oct. 4
    • T. Hunkapiller, R. J. Kaiser, B. F. Koop, and L. Hood, "Large-scale and automated DNA sequence determination," Science, vol. 254, no. 5028, pp. 59-67, Oct. 4, 1991.
    • (1991) Science , vol.254 , Issue.5028 , pp. 59-67
    • Hunkapiller, T.1    Kaiser, R.J.2    Koop, B.F.3    Hood, L.4
  • 12
    • 84888800164 scopus 로고    scopus 로고
    • [Online]
    • National Center for Biotechnology Information. [Online]. Available: http://www.ncbi.nlm.nih.gov/.
  • 13
    • 84888771840 scopus 로고    scopus 로고
    • [Online]
    • The Institute for Genomics Research (TIGR). [Online]. Available: http://www.tigr.org.
  • 14
    • 84888786401 scopus 로고    scopus 로고
    • [Online]
    • The Sanger Centre. [Online]. Available: http://www.sanger.ad.uk.
  • 15
    • 84888807201 scopus 로고    scopus 로고
    • [Online]
    • The Joint Genome Institute. [Online]. Available: http://www.jgi.doe.gov.
  • 16
    • 0032842518 scopus 로고    scopus 로고
    • Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives: Implications for the evolution of viral quasispecies during a persistent infection
    • Nov.
    • M. Toja, C. Escarmís, and E. Domingo, "Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives: Implications for the evolution of viral quasispecies during a persistent infection," Virus Research, vol. 64, no. 2, pp. 161-171, Nov. 1999.
    • (1999) Virus Research , vol.64 , Issue.2 , pp. 161-171
    • Toja, M.1    Escarmís, C.2    Domingo, E.3
  • 18
    • 84888788932 scopus 로고    scopus 로고
    • Primer Express tutorial for real time quantitative PCR primer and probe design
    • Primer Express tutorial for real time quantitative PCR primer and probe design. Applied Biosystems [Online]. Available: http://www.appliedbiosystems. com/support/tutorials/taqman/.
    • Applied Biosystems [Online]
  • 19
    • 0035513806 scopus 로고    scopus 로고
    • Identification by subtractive hybridization of sequences specific or Salmonella enterica serovar Enteritidis
    • Nov.
    • P. G. Agron, R. L. Walker, H. Kinde, S. J. Sawyer, D. C. Hayes, J. Wollard, and G. L. Andersen, "Identification by subtractive hybridization of sequences specific (or Salmonella enterica serovar Enteritidis," Appl. Environ. Microbiol., vol. 67, no. 11, pp. 4984-4991, Nov. 2001.
    • (2001) Appl. Environ. Microbiol. , vol.67 , Issue.11 , pp. 4984-4991
    • Agron, P.G.1    Walker, R.L.2    Kinde, H.3    Sawyer, S.J.4    Hayes, D.C.5    Wollard, J.6    Andersen, G.L.7
  • 20
    • 84888809091 scopus 로고    scopus 로고
    • [Online]
    • Centers for Disease Control and Prevention. Biological Disease/Agents List. [Online]. Available: http://www.bt.cdc.gov/Agent/Agentlist.asp.
  • 21
    • 84888774455 scopus 로고    scopus 로고
    • [Online]
    • National Center for Biotechnology Information. Basic Local Alignment Search Tool (BLAST). [Online]. Available: http://www.ncbi.nlm.nih.gov/BLAST/.
  • 23
    • 0036189312 scopus 로고    scopus 로고
    • Strategies for multiple sequence alignment
    • Mar.
    • H. B.Nicholas, Jr., A. J. Ropelewski, and D.W. Deerfield, II, "Strategies for multiple sequence alignment," BioTechniques, vol. 32, no. 3, pp. 572-591, Mar. 2002.
    • (2002) BioTechniques , vol.32 , Issue.3 , pp. 572-591
    • Nicholas Jr., H.B.1    Ropelewski, A.J.2    Deerfield II, D.W.3
  • 25
    • 0029861894 scopus 로고    scopus 로고
    • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    • Oct. 29
    • B. Morgenstem, A. Dress, and T. Werner, "Multiple DNA and protein sequence alignment based on segment-to-segment comparison," Proc. Nat. Acad. Sci. USA, vol. 93, no. 22, pp. 12098-12 103, Oct. 29, 1996.
    • (1996) Proc. Nat. Acad. Sci. USA , vol.93 , Issue.22 , pp. 12098-12103
    • Morgenstem, B.1    Dress, A.2    Werner, T.3
  • 26
    • 0031854952 scopus 로고    scopus 로고
    • DIALIGN: Finding local similarities by multiple sequence alignment
    • Apr.
    • B. Morgenstern, K. Frech, A. Dress, and T. Werner, "DIALIGN: Finding local similarities by multiple sequence alignment," Bioinformatics, vol. 14, no. 3, pp. 290-294, Apr. 1998.
    • (1998) Bioinformatics , vol.14 , Issue.3 , pp. 290-294
    • Morgenstern, B.1    Frech, K.2    Dress, A.3    Werner, T.4
  • 28
    • 33646761067 scopus 로고    scopus 로고
    • Ph.D. dissertation. Technische Fakultöten, Universität Bielefeld, Bielefeld, Germany
    • S. Kurtz, "Construction and application of virtual suffix trees," Ph.D. dissertation. Technische Fakultöten, Universität Bielefeld, Bielefeld, Germany, 2002.
    • (2002) Construction and Application of Virtual Suffix Trees
    • Kurtz, S.1
  • 29
  • 30
    • 84888770087 scopus 로고    scopus 로고
    • [Online]
    • Entrez genome (viral genomes). [Online]. Available: http://www.ncbi.nlm. nih.gov/PMGifs/Genomes/viruses.html.
    • Entrez Genome (Viral Genomes)
  • 31
    • 84888773974 scopus 로고    scopus 로고
    • [Online]
    • Legionella genome project. [Online]. Available: http://genome3.cpmc. columbia.edu/~legion/leg_info.html.
  • 32
    • 84888780011 scopus 로고    scopus 로고
    • [Online]
    • Centers for Disease Control. Q Fever. [Online]. Available: http://www.cdc.gov/ncidod/dvrd/qfever/.
  • 34
    • 84888779672 scopus 로고    scopus 로고
    • [Online]
    • Cepheid SmartCycler. [Online]. Available: http://www.smartcycler.com.
  • 35
    • 84888813691 scopus 로고    scopus 로고
    • [Online]
    • Idaho Technology Inc. R.A.P.I.D. [Online]. Available: http://www.idahotech.com.
  • 36
    • 84888767816 scopus 로고    scopus 로고
    • [Online]
    • Plum Island Animal Disease Center. U.S. Department of Agriculture. [Online]. Available: http://www.ars.usda.gov/plum/.
  • 37
    • 84888775715 scopus 로고    scopus 로고
    • [Online]
    • United States Animal Health Association and National Animal Health Emergency Management System. Foot-and-mouth disease outbreak in Great Britain. [Online]. Available: http://www.usaha.org/issues/fmd2001.html.
    • Foot-and-mouth Disease Outbreak in Great Britain
  • 38
    • 0033834116 scopus 로고    scopus 로고
    • Primary diagnosis of foot-and-mouth disease by reverse transcription polymerase chain reaction
    • Sept.
    • S. M. Reid, N. P. Ferris, G. H. Hutchings, A. R. Samuel, and N. J. Knowles, "Primary diagnosis of foot-and-mouth disease by reverse transcription polymerase chain reaction," J. Virological Methods, vol. 89, no. 1-2, pp. 167-176, Sept. 2000.
    • (2000) J. Virological Methods , vol.89 , Issue.1-2 , pp. 167-176
    • Reid, S.M.1    Ferris, N.P.2    Hutchings, G.H.3    Samuel, A.R.4    Knowles, N.J.5
  • 39
    • 84888768696 scopus 로고    scopus 로고
    • manuscript in preparation
    • P. M. McCready et al., manuscript in preparation.
    • McCready, P.M.1
  • 40
    • 84888784778 scopus 로고    scopus 로고
    • "Primers and probes for the detection of HIV, US Patent 5985 544, Nov. 16
    • P. Kasper, "Primers and probes for the detection of HIV," US Patent 5985 544, Nov. 16, 1999.
    • (1999)
    • Kasper, P.1
  • 42
    • 0042624145 scopus 로고    scopus 로고
    • Comparative protein structure modeling in genomics
    • May
    • R. Sánchez and A. Sali, "Comparative protein structure modeling in genomics," J. Comput. Phys., vol. 151, pp. 388-401, May 1999.
    • (1999) J. Comput. Phys. , vol.151 , pp. 388-401
    • Sánchez, R.1    Sali, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.