메뉴 건너뛰기




Volumn 228, Issue 1, 2003, Pages 45-49

Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes

Author keywords

16S rRNA microheterogeneity; Taxonomy; Whole genome sequence

Indexed keywords

NUCLEOTIDE; RNA 16S;

EID: 0242552653     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(03)00717-1     Document Type: Article
Times cited : (189)

References (24)
  • 1
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. Bacterial evolution. Microbiol. Rev. 51:1987;221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 2
    • 0000685441 scopus 로고    scopus 로고
    • The road map to the manual
    • Boone, D.R. and Castenholz, R.W., Eds. Springer, New York
    • Garrity, G.M. and Holt, J.G. (2001) The road map to the manual. In: Bergey's Manual of Systematic Bacteriology, 2nd edn. (Boone, D.R. and Castenholz, R.W., Eds.), Vol. 1., pp. 119-141. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology, 2nd Edn. , vol.1 , pp. 119-141
    • Garrity, G.M.1    Holt, J.G.2
  • 3
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:1994;846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 5
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox G.E., Wisotzkey J.D., Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:1992;166-170.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 6
    • 0029027263 scopus 로고
    • Intraspecific variation in small-subunit rRNA sequences in GenBank: Why single sequences may not adequatly represent prokaryotic taxa
    • Clayton R.A., Sutton G., Hinkle P.S., Bult C., Fields C. Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequatly represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45:1995;595-599.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 595-599
    • Clayton, R.A.1    Sutton, G.2    Hinkle, P.S.3    Bult, C.4    Fields, C.5
  • 7
    • 0000903389 scopus 로고    scopus 로고
    • Multiplicity of ribosomal RNA operons in prokaryotes
    • De Bruijn, J.F., Lupiski, J.R. and Weinstock, G., Eds. Chapman and Hall.
    • Schmidt, T.M. (1997) Multiplicity of ribosomal RNA operons in prokaryotes. In: Bacterial Genomes: Physical Structure and Analysis (De Bruijn, J.F., Lupiski, J.R. and Weinstock, G., Eds.), pp. 221-229. Chapman and Hall.
    • (1997) Bacterial Genomes: Physical Structure and Analysis , pp. 221-229
    • Schmidt, T.M.1
  • 8
  • 9
    • 0025936264 scopus 로고
    • Multigene families and the evolution of complexity
    • Ohta T. Multigene families and the evolution of complexity. J. Mol. Evol. 33:1991;34-41.
    • (1991) J. Mol. Evol. , vol.33 , pp. 34-41
    • Ohta, T.1
  • 10
    • 0026063996 scopus 로고
    • Evidence for biased gene conversion in concerted evolution of ribosomal DNA
    • Hillis D.M., Moritz C., Porter C.A., Baker R.J. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science. 251:1991;308-310.
    • (1991) Science , vol.251 , pp. 308-310
    • Hillis, D.M.1    Moritz, C.2    Porter, C.A.3    Baker, R.J.4
  • 11
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia V., Lafay B., Christen R. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol. Biol. Evol. 13:1996;451-461.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 13
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycte Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang Y., Zhang Z., Ramanan N. The actinomycte Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J. Bacteriol. 179:1997;3270-3276.
    • (1997) J. Bacteriol. , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.2    Ramanan, N.3
  • 14
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
    • Yap W.H., Zhang Z., Wang Y. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J. Bacteriol. 181:1999;5201-5209.
    • (1999) J. Bacteriol. , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 15
    • 0035146181 scopus 로고    scopus 로고
    • Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis
    • Satokari R.M., Vaughan E.E., Akkermans A.D., Saarela M., de Vos W.M. Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 67:2001;504-513.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 504-513
    • Satokari, R.M.1    Vaughan, E.E.2    Akkermans, A.D.3    Saarela, M.4    De Vos, W.M.5
  • 16
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nüble U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:1996;5336-5643.
    • (1996) J. Bacteriol. , vol.178 , pp. 5336-5643
    • Nüble, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 18
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:2003;3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 19
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews D.H., Sabina J., Zuker M., Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:1999;911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 21
    • 0036225026 scopus 로고    scopus 로고
    • Polymorphism in repeated 16S rRNA genes is a common property of type strains and environmnetal isolates of the genus Vibrio
    • Moreno C., Romero J., Espejo R.T. Polymorphism in repeated 16S rRNA genes is a common property of type strains and environmnetal isolates of the genus Vibrio. Microbiology. 148:2002;1233-1239.
    • (2002) Microbiology , vol.148 , pp. 1233-1239
    • Moreno, C.1    Romero, J.2    Espejo, R.T.3
  • 22
    • 0037804236 scopus 로고    scopus 로고
    • Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veilonella: Implications for phylogeny and taxonomy
    • Marchanin H., Teyssier C., de Buochberg M.S., Jean-Pierre H., Carriere C., Jumas-Bilak E. Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veilonella: implications for phylogeny and taxonomy. Microbiology. 149:2003;1493-1501.
    • (2003) Microbiology , vol.149 , pp. 1493-1501
    • Marchanin, H.1    Teyssier, C.2    De Buochberg, M.S.3    Jean-Pierre, H.4    Carriere, C.5    Jumas-Bilak, E.6
  • 23
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Van de Peer Y., Chapelle S., De Wachter R. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res. 17:1996;3381-3391.
    • (1996) Nucleic Acids Res. , vol.17 , pp. 3381-3391
    • Van De Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 24
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • Wuyts J., Van de Peer Y., De Wachter R. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids res. 29:2001;5017-5028.
    • (2001) Nucleic Acids res. , vol.29 , pp. 5017-5028
    • Wuyts, J.1    Van De Peer, Y.2    De Wachter, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.