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Volumn 18, Issue , 2002, Pages S312-S320

Efficient multiple genome alignment

Author keywords

Efficient algorithms; Genome comparison; Graph algorithms; Multiple alignment; Suffix trees

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; COMPUTER PROGRAM; DNA SEQUENCE; EVALUATION; GENE EXPRESSION PROFILING; HUMAN; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; ADENOVIRUS; CONFERENCE PAPER; ESCHERICHIA COLI; GENOME; NONHUMAN; PRIORITY JOURNAL;

EID: 0242470267     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.suppl_1.S312     Document Type: Article
Times cited : (134)

References (23)
  • 2
  • 3
    • 0033861549 scopus 로고    scopus 로고
    • Human and mouse gene structure: Comparative analysis and application to exon prediction
    • Batzoglu, S., Pachter, L., Mesirov, J., Berger, B. and Lander, E. (2000) Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res., 10, 950-958.
    • (2000) Genome Res. , vol.10 , pp. 950-958
    • Batzoglu, S.1    Pachter, L.2    Mesirov, J.3    Berger, B.4    Lander, E.5
  • 4
    • 0035024494 scopus 로고    scopus 로고
    • Efficient large-scale sequence comparison by locality-sensitive hashing
    • Buhler, J. (2001) Efficient large-scale sequence comparison by locality-sensitive hashing. Bioinformatics, 17, 419-428.
    • (2001) Bioinformatics , vol.17 , pp. 419-428
    • Buhler, J.1
  • 10
    • 85030563572 scopus 로고
    • Determining DNA sequence similarity using maximum independent set algorithms for interval graphs
    • Lecture Notes in Computer Science, Springer
    • Joseph, D., Meidanis, J. and Tiwari, P. (1992) Determining DNA sequence similarity using maximum independent set algorithms for interval graphs. In Proceedings of the Third Scandinavian Workshop on Algorithm Theory, Helsinki 1992, Lecture Notes in Computer Science, 621, Springer, pp. 326-337.
    • (1992) Proceedings of the Third Scandinavian Workshop on Algorithm Theory, Helsinki 1992 , vol.621 , pp. 326-337
    • Joseph, D.1    Meidanis, J.2    Tiwari, P.3
  • 12
    • 0033832676 scopus 로고    scopus 로고
    • Conservation, regulation, synteny, and introns in large-scale C. briggsae-C. elegans genomic alignment
    • Kent, W. and Zahler, A. (2000) Conservation, regulation, synteny, and introns in large-scale C. briggsae-C. elegans genomic alignment. Genome Res., 10, 1115-1125.
    • (2000) Genome Res. , vol.10 , pp. 1115-1125
    • Kent, W.1    Zahler, A.2
  • 15
    • 0027681165 scopus 로고
    • Suffix arrays: A new method for on-line string searches
    • Manber, U. and Myers, E. (1993) Suffix arrays: a new method for on-line string searches. SIAM J. Comput., 22, 935-948.
    • (1993) SIAM J. Comput. , vol.22 , pp. 935-948
    • Manber, U.1    Myers, E.2
  • 16
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • McCreight, E. (1976) A space-economical suffix tree construction algorithm. J. ACM, 23, 262-272.
    • (1976) J. ACM , vol.23 , pp. 262-272
    • McCreight, E.1
  • 17
    • 0035011227 scopus 로고    scopus 로고
    • Comparison of genomic DNA sequences: Solved and unsolved problems
    • Miller, W. (2001) Comparison of genomic DNA sequences: solved and unsolved problems. Bioinformatics, 17, 391-397.
    • (2001) Bioinformatics , vol.17 , pp. 391-397
    • Miller, W.1
  • 19
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino-acid sequence of two proteins
    • Needleman, S. and Wunsch, C. (1970) A general method applicable to the search for similarities in the amino-acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.1    Wunsch, C.2
  • 20
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J., Higgins, D. and Gibson, T. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 21
    • 0020494998 scopus 로고
    • Algorithms for approximate string matching
    • Ukkonen, E. (1985) Algorithms for approximate string matching. Information and Control, 64, 100-118.
    • (1985) Information and Control , vol.64 , pp. 100-118
    • Ukkonen, E.1
  • 22
    • 0024544755 scopus 로고
    • A fast and sensitive multiple alignment algorithm
    • Vingron, M. and Argos, P. (1989) A fast and sensitive multiple alignment algorithm. Comput. Appl. Biosci., 5, 115-121.
    • (1989) Comput. Appl. Biosci. , vol.5 , pp. 115-121
    • Vingron, M.1    Argos, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.