-
1
-
-
0242693135
-
On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea
-
14527276
-
Talbot NJ On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea Annu Rev Microbiol 2003, 57:177-202 14527276
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 177-202
-
-
Talbot, N.J.1
-
2
-
-
20244366844
-
The genome sequence of the rice blast fungus Magnaporthe grisea
-
15846337
-
Dean RA Talbot NJ Ebbole DJ Farman ML Mitchell TK Orbach MJ Thon M Kulkarni R Xu JR Pan H Read ND Lee YH Carbone I Brown D Oh YY Donofrio N Jeong JS Soanes DM Djonovic S Kolomiets E Rehmeyer C Li W Harding M Kim S Lebrun MH Bohnert H Coughlan S Butler J Calvo S Ma LJ Nicol R Purcell S Nusbaum C Galagan JE Birren BW The genome sequence of the rice blast fungus Magnaporthe grisea Nature 2005, 434(7036):980-986 15846337
-
(2005)
Nature
, vol.434
, Issue.7036
, pp. 980-986
-
-
Dean, R.A.1
Talbot, N.J.2
Ebbole, D.J.3
Farman, M.L.4
Mitchell, T.K.5
Orbach, M.J.6
Thon, M.7
Kulkarni, R.8
Xu, J.R.9
Pan, H.10
Read, N.D.11
Lee, Y.H.12
Carbone, I.13
Brown, D.14
Oh, Y.Y.15
Donofrio, N.16
Jeong, J.S.17
Soanes, D.M.18
Djonovic, S.19
Kolomiets, E.20
Rehmeyer, C.21
Li, W.22
Harding, M.23
Kim, S.24
Lebrun, M.H.25
Bohnert, H.26
Coughlan, S.27
Butler, J.28
Calvo, S.29
Ma, L.J.30
Nicol, R.31
Purcell, S.32
Nusbaum, C.33
Galagan, J.E.34
Birren, B.W.35
more..
-
3
-
-
35148848640
-
Magnaporthe as a model for understanding host-pathogen interactions
-
17489691
-
Ebbole DJ Magnaporthe as a model for understanding host-pathogen interactions Annu Rev Phytopathol 2007, 45:437-456 17489691
-
(2007)
Annu Rev Phytopathol
, vol.45
, pp. 437-456
-
-
Ebbole, D.J.1
-
4
-
-
2542491030
-
The evolution of molecular genetic pathways and networks
-
15112228
-
Cork JM Purugganan MD The evolution of molecular genetic pathways and networks Bioessays 2004, 26(5):479-484 15112228
-
(2004)
Bioessays
, vol.26
, Issue.5
, pp. 479-484
-
-
Cork, J.M.1
Purugganan, M.D.2
-
5
-
-
0029027081
-
Genetic networks
-
7624792
-
Loomis WF Sternberg PW Genetic networks Science 1995, 269(5224):649 7624792
-
(1995)
Science
, vol.269
, Issue.5224
, pp. 649
-
-
Loomis, W.F.1
Sternberg, P.W.2
-
7
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
10688190
-
Uetz P Giot L Cagney G Mansfield TA Judson RS Knight JR Lockshon D Narayan V Srinivasan M Pochart P Qureshi-Emili A Li Y Godwin B Conover D Kalbfleisch T Vijayadamodar G Yang M Johnston M Fields S Rothberg JM A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 2000, 403(6770):623-627 10688190
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
8
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
14605208
-
Giot L Bader JS Brouwer C Chaudhuri A Kuang B Li Y Hao YL Ooi CE Godwin B Vitols E Vijayadamodar G Pochart P Machineni H Welsh M Kong Y Zerhusen B Malcolm R Varrone Z Collis A Minto M Burgess S McDaniel L Stimpson E Spriggs F Williams J Neurath K Ioime N Agee M Voss E Furtak K Renzulli R Aanensen N Carrolla S Bickelhaupt E Lazovatsky Y DaSilva A Zhong J Stanyon CA Finley RL Jr White KP Braverman M Jarvie T Gold S Leach M Knight J Shimkets RA McKenna MP Chant J Rothberg JM A protein interaction map of Drosophila melanogaster Science 2003, 302(5651):1727-1736 14605208
-
(2003)
Science
, vol.302
, Issue.5661
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
Machineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
DaSilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley Jr., R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
9
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
1698949 14704431
-
Li S Armstrong CM Bertin N Ge H Milstein S Boxem M Vidalain PO Han JD Chesneau A Hao T Goldberg DS Li N Martinez M Rual JF Lamesch P Xu L Tewari M Wong SL Zhang LV Berriz GF Jacotot L Vaglio P Reboul J Hirozane-Kishikawa T Li Q Gabel HW Elewa A Baumgartner B Rose DJ Yu H Bosak S Sequerra R Fraser A Mango SE Saxton WM Strome S Heuvel Van Den S Piano F Vandenhaute J Sardet C Gerstein M Doucette-Stamm L Gunsalus KC Harper JW Cusick ME Roth FP Hill DE Vidal M A map of the interactome network of the metazoan C. elegans Science 2004, 303(5657):540-543 1698949 14704431
-
(2004)
Science
, vol.303
, Issue.5657
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Heuvel, S.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
10
-
-
27644484749
-
A protein interaction network of the malaria parasite Plasmodium falciparum
-
16267556
-
LaCount DJ Vignali M Chettier R Phansalkar A Bell R Hesselberth JR Schoenfeld LW Ota I Sahasrabudhe S Kurschner C Fields S Hughes RE A protein interaction network of the malaria parasite Plasmodium falciparum Nature 2005, 438(7064):103-107 16267556
-
(2005)
Nature
, vol.438
, Issue.7064
, pp. 103-107
-
-
LaCount, D.J.1
Vignali, M.2
Chettier, R.3
Phansalkar, A.4
Bell, R.5
Hesselberth, J.R.6
Schoenfeld, L.W.7
Ota, I.8
Sahasrabudhe, S.9
Kurschner, C.10
Fields, S.11
Hughes, R.E.12
-
11
-
-
38549161592
-
A proteome-wide protein interaction map for Campylobacter jejuni
-
2323224 17615063
-
Parrish JR Yu J Liu G Hines JA Chan JE Mangiola BA Zhang H Pacifico S Fotouhi F DiRita VJ Ideker T Andrews P Finley RL Jr A proteome-wide protein interaction map for Campylobacter jejuni Genome Biol 2007, 8(7):R130 2323224 17615063
-
(2007)
Genome Biol
, vol.8
, Issue.7
-
-
Parrish, J.R.1
Yu, J.2
Liu, G.3
Hines, J.A.4
Chan, J.E.5
Mangiola, B.A.6
Zhang, H.7
Pacifico, S.8
Fotouhi, F.9
DiRita, V.J.10
Ideker, T.11
Andrews, P.12
Finley Jr., R.L.13
-
13
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
-
311221 11731503
-
Matthews LR Vaglio P Reboul J Ge H Davis BP Garrels J Vincent S Vidal M Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs" Genome Res 2001, 11(12):2120-2126 311221 11731503
-
(2001)
Genome Res
, vol.11
, Issue.12
, pp. 2120-2126
-
-
Matthews, L.R.1
Vaglio, P.2
Reboul, J.3
Ge, H.4
Davis, B.P.5
Garrels, J.6
Vincent, S.7
Vidal, M.8
-
14
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
12169552
-
Ideker T Ozier O Schwikowski B Siegel AF Discovering regulatory and signalling circuits in molecular interaction networks Bioinformatics 2002, 18(Suppl 1):S233-240 12169552
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
15
-
-
33646358998
-
Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations
-
1449908 16641319
-
Wu X Zhu L Guo J Zhang DY Lin K Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations Nucleic Acids Res 2006, 34(7):2137-2150 1449908 16641319
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.7
, pp. 2137-2150
-
-
Wu, X.1
Zhu, L.2
Guo, J.3
Zhang, D.Y.4
Lin, K.5
-
16
-
-
0038620469
-
Integrative approach for computationally inferring protein domain interactions
-
12761053
-
Ng SK Zhang Z Tan SH Integrative approach for computationally inferring protein domain interactions Bioinformatics 2003, 19(8):923-929 12761053
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 923-929
-
-
Ng, S.K.1
Zhang, Z.2
Tan, S.H.3
-
17
-
-
29144461552
-
Predicting protein-protein interaction by searching evolutionary tree automorphism space
-
1618802 15961463
-
Jothi R Kann MG Przytycka TM Predicting protein-protein interaction by searching evolutionary tree automorphism space Bioinformatics 2005, 21(Suppl 1):i241-250 1618802 15961463
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Jothi, R.1
Kann, M.G.2
Przytycka, T.M.3
-
19
-
-
34248371273
-
Predicting protein-protein interactions based only on sequences information
-
1838603 17360525
-
Shen J Zhang J Luo X Zhu W Yu K Chen K Li Y Jiang H Predicting protein-protein interactions based only on sequences information Proc Natl Acad Sci USA 2007, 104(11):4337-4341 1838603 17360525
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.11
, pp. 4337-4341
-
-
Shen, J.1
Zhang, J.2
Luo, X.3
Zhu, W.4
Yu, K.5
Chen, K.6
Li, Y.7
Jiang, H.8
-
20
-
-
42149163727
-
A mixture of feature experts approach for protein-protein interaction prediction
-
2230507 18269700
-
Qi Y Klein-Seetharaman J Bar-Joseph Z A mixture of feature experts approach for protein-protein interaction prediction BMC Bioinformatics 2007, 8(Suppl 10):S6 2230507 18269700
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 10
-
-
Qi, Y.1
Klein-Seetharaman, J.2
Bar-Joseph, Z.3
-
21
-
-
33846086800
-
STRING 7 - Recent developments in the integration and prediction of protein interactions
-
1669762 Database 1669762 17098935
-
von Mering C Jensen LJ Kuhn M Chaffron S Doerks T Kruger B Snel B Bork P STRING 7 - recent developments in the integration and prediction of protein interactions Nucleic Acids Res 2007, 35 Database D358-362 1669762 17098935
-
(2007)
Nucleic Acids Res
, vol.35
-
-
von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Kruger, B.6
Snel, B.7
Bork, P.8
-
22
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
16082366
-
Rhodes DR Tomlins SA Varambally S Mahavisno V Barrette T Kalyana-Sundaram S Ghosh D Pandey A Chinnaiyan AM Probabilistic model of the human protein-protein interaction network Nat Biotechnol 2005, 23(8):951-959 16082366
-
(2005)
Nat Biotechnol
, vol.23
, Issue.8
, pp. 951-959
-
-
Rhodes, D.R.1
Tomlins, S.A.2
Varambally, S.3
Mahavisno, V.4
Barrette, T.5
Kalyana-Sundaram, S.6
Ghosh, D.7
Pandey, A.8
Chinnaiyan, A.M.9
-
23
-
-
33846680167
-
Identification of conserved protein complexes based on a model of protein network evolution
-
17237088
-
Hirsh E Sharan R Identification of conserved protein complexes based on a model of protein network evolution Bioinformatics 2007, 23(2):e170-176 17237088
-
(2007)
Bioinformatics
, vol.23
, Issue.2
-
-
Hirsh, E.1
Sharan, R.2
-
24
-
-
14744270216
-
A first-draft human protein-interaction map
-
522870 15345047
-
Lehner B Fraser AG A first-draft human protein-interaction map Genome Biol 2004, 5(9):R63 522870 15345047
-
(2004)
Genome Biol
, vol.5
, Issue.9
-
-
Lehner, B.1
Fraser, A.G.2
-
25
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
11743721
-
Remm M Storm CE Sonnhammer EL Automatic clustering of orthologs and in-paralogs from pairwise species comparisons J Mol Biol 2001, 314(5):1041-1052 11743721
-
(2001)
J Mol Biol
, vol.314
, Issue.5
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
26
-
-
23744481400
-
What do we learn from high-throughput protein interaction data?
-
15966804
-
Titz B Schlesner M Uetz P What do we learn from high-throughput protein interaction data? Expert Rev Proteomics 2004, 1(1):111-121 15966804
-
(2004)
Expert Rev Proteomics
, vol.1
, Issue.1
, pp. 111-121
-
-
Titz, B.1
Schlesner, M.2
Uetz, P.3
-
27
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
99070 11752321
-
Xenarios I Salwinski L Duan XJ Higney P Kim SM Eisenberg D DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions Nucleic Acids Res 2002, 30(1):303-305 99070 11752321
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.M.5
Eisenberg, D.6
-
28
-
-
33644877439
-
Human protein reference database - 2006 update
-
1347503 16381900
-
Mishra GR Suresh M Kumaran K Kannabiran N Suresh S Bala P Shivakumar K Anuradha N Reddy R Raghavan TM Menon S Hanumanthu G Gupta M Upendran S Gupta S Mahesh M Jacob B Mathew P Chatterjee P Arun KS Sharma S Chandrika KN Deshpande N Palvankar K Raghavnath R Krishnakanth R Karathia H Rekha B Nayak R Vishnupriya G Kumar HG Nagini M Kumar GS Jose R Deepthi P Mohan SS Gandhi TK Harsha HC Deshpande KS Sarker M Prasad TS Pandey A Human protein reference database - 2006 update Nucleic Acids Res 2006, 34 Database D411-414 1347503 16381900
-
(2006)
Nucleic Acids Res
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
Menon, S.11
Hanumanthu, G.12
Gupta, M.13
Upendran, S.14
Gupta, S.15
Mahesh, M.16
Jacob, B.17
Mathew, P.18
Chatterjee, P.19
Arun, K.S.20
Sharma, S.21
Chandrika, K.N.22
Deshpande, N.23
Palvankar, K.24
Raghavnath, R.25
Krishnakanth, R.26
Karathia, H.27
Rekha, B.28
Nayak, R.29
Vishnupriya, G.30
Kumar, H.G.31
Nagini, M.32
Kumar, G.S.33
Jose, R.34
Deepthi, P.35
Mohan, S.S.36
Gandhi, T.K.37
Harsha, H.C.38
Deshpande, K.S.39
Sarker, M.40
Prasad, T.S.41
Pandey, A.42
more..
-
29
-
-
13844264506
-
iPfam: Visualization Of protein-protein interactions in PDB at domain and amino acid resolutions
-
15353450
-
Finn RD Marshall M Bateman A iPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions Bioinformatics 2005, 21(3):410-412 15353450
-
(2005)
Bioinformatics
, vol.21
, Issue.3
, pp. 410-412
-
-
Finn, R.D.1
Marshall, M.2
Bateman, A.3
-
30
-
-
39549097090
-
Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service
-
2246157 18215330
-
Kim JG Park D Kim BC Cho SW Kim YT Park YJ Cho HJ Park H Kim KB Yoon KO Park SJ Lee BM Bhak J Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service BMC Bioinformatics 2008, 9:41 2246157 18215330
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 41
-
-
Kim, J.G.1
Park, D.2
Kim, B.C.3
Cho, S.W.4
Kim, Y.T.5
Park, Y.J.6
Cho, H.J.7
Park, H.8
Kim, K.B.9
Yoon, K.O.10
Park, S.J.11
Lee, B.M.12
Bhak, J.13
-
31
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
155252 11779829
-
Jansen R Greenbaum D Gerstein M Relating whole-genome expression data with protein-protein interactions Genome Res 2002, 12(1):37-46 155252 11779829
-
(2002)
Genome Res
, vol.12
, Issue.1
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
32
-
-
34547852250
-
Computational prediction of host-pathogen protein-protein interactions
-
17646292
-
Dyer MD Murali TM Sobral BW Computational prediction of host-pathogen protein-protein interactions Bioinformatics 2007, 23(13):i159-166 17646292
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Dyer, M.D.1
Murali, T.M.2
Sobral, B.W.3
-
33
-
-
34248164526
-
A draft of protein interactions in the malaria parasite P. falciparum
-
17300188
-
Wuchty S Ipsaro JJ A draft of protein interactions in the malaria parasite P. falciparum J Proteome Res 2007, 6(4):1461-1470 17300188
-
(2007)
J Proteome Res
, vol.6
, Issue.4
, pp. 1461-1470
-
-
Wuchty, S.1
Ipsaro, J.J.2
-
34
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - Database and tools update
-
Database 1669752 17099226
-
Barrett T Troup DB Wilhite SE Ledoux P Rudnev D Evangelista C Kim IF Soboleva A Tomashevsky M Edgar R NCBI GEO: Mining tens of millions of expression profiles - database and tools update Nucleic Acids Res 2007, 35 Database D760-765 1669752 17099226
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
35
-
-
0035799707
-
Lethality and centrality in protein networks
-
11333967
-
Jeong H Mason SP Barabasi AL Oltvai ZN Lethality and centrality in protein networks Nature 2001, 411(6833):41-42 11333967
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
36
-
-
34047150746
-
Genome-wide functional analysis of pathogenicity genes in the rice blast fungus
-
17353894
-
Jeon J Park SY Chi MH Choi J Park J Rho HS Kim S Goh J Yoo S Choi J Park JY Yi M Yang S Kwon MJ Han SS Kim BR Khang CH Park B Lim SE Jung K Kong S Karunakaran M Oh HS Kim H Kim S Park J Kang S Choi WB Kang S Lee YH Genome-wide functional analysis of pathogenicity genes in the rice blast fungus Nat Genet 2007, 39(4):561-565 17353894
-
(2007)
Nat Genet
, vol.39
, Issue.4
, pp. 561-565
-
-
Jeon, J.1
Park, S.Y.2
Chi, M.H.3
Choi, J.4
Park, J.5
Rho, H.S.6
Kim, S.7
Goh, J.8
Yoo, S.9
Choi, J.10
Park, J.Y.11
Yi, M.12
Yang, S.13
Kwon, M.J.14
Han, S.S.15
Kim, B.R.16
Khang, C.H.17
Park, B.18
Lim, S.E.19
Jung, K.20
Kong, S.21
Karunakaran, M.22
Oh, H.S.23
Kim, H.24
Kim, S.25
Park, J.26
Kang, S.27
Choi, W.B.28
Kang, S.29
Lee, Y.H.30
more..
-
39
-
-
3543099834
-
Evolution and topology in the yeast protein interaction network
-
442146 15231746
-
Wuchty S Evolution and topology in the yeast protein interaction network Genome Res 2004, 14(7):1310-1314 442146 15231746
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1310-1314
-
-
Wuchty, S.1
-
40
-
-
11144234660
-
Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae
-
539745 15608068
-
Said MR Begley TJ Oppenheim AV Lauffenburger DA Samson LD Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae Proc Natl Acad Sci USA 2004, 101(52):18006-18011 539745 15608068
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.52
, pp. 18006-18011
-
-
Said, M.R.1
Begley, T.J.2
Oppenheim, A.V.3
Lauffenburger, D.A.4
Samson, L.D.5
-
41
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
1865486 16844706
-
Jonsson PF Bates PA Global topological features of cancer proteins in the human interactome Bioinformatics 2006, 22(18):2291-2297 1865486 16844706
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
42
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
15944704
-
Palla G Derenyi I Farkas I Vicsek T Uncovering the overlapping community structure of complex networks in nature and society Nature 2005, 435(7043):814-818 15944704
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
43
-
-
30644463216
-
Cluster analysis of networks generated through homology: Automatic identification of important protein communities involved in cancer metastasis
-
1363365 16398927
-
Jonsson PF Cavanna T Zicha D Bates PA Cluster analysis of networks generated through homology: Automatic identification of important protein communities involved in cancer metastasis BMC Bioinformatics 2006, 7:2 1363365 16398927
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 2
-
-
Jonsson, P.F.1
Cavanna, T.2
Zicha, D.3
Bates, P.A.4
-
44
-
-
33947252154
-
Network-based prediction of protein function
-
1847944 17353930
-
Sharan R Ulitsky I Shamir R Network-based prediction of protein function Mol Syst Biol 2007, 3:88 1847944 17353930
-
(2007)
Mol Syst Biol
, vol.3
, pp. 88
-
-
Sharan, R.1
Ulitsky, I.2
Shamir, R.3
-
45
-
-
33644644466
-
Identification and analysis of evolutionarily cohesive functional modules in protein networks
-
1415216 16449501
-
Campillos M von Mering C Jensen LJ Bork P Identification and analysis of evolutionarily cohesive functional modules in protein networks Genome Res 2006, 16(3):374-382 1415216 16449501
-
(2006)
Genome Res
, vol.16
, Issue.3
, pp. 374-382
-
-
Campillos, M.1
von Mering, C.2
Jensen, L.J.3
Bork, P.4
-
46
-
-
33645830948
-
CFinder: Locating cliques and overlapping modules in biological networks
-
16473872
-
Adamcsek B Palla G Farkas IJ Derenyi I Vicsek T CFinder: Locating cliques and overlapping modules in biological networks Bioinformatics 2006, 22(8):1021-1023 16473872
-
(2006)
Bioinformatics
, vol.22
, Issue.8
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derenyi, I.4
Vicsek, T.5
-
47
-
-
33751017706
-
Discovering disease-genes by topological features in human protein-protein interaction network
-
16954137
-
Xu J Li Y Discovering disease-genes by topological features in human protein-protein interaction network Bioinformatics 2006, 22(22):2800-2805 16954137
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2800-2805
-
-
Xu, J.1
Li, Y.2
-
48
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
17344885
-
Lage K Karlberg EO Storling ZM Olason PI Pedersen AG Rigina O Hinsby AM Tumer Z Pociot F Tommerup N Moreau Y Brunak S A human phenome-interactome network of protein complexes implicated in genetic disorders Nat Biotechnol 2007, 25(3):309-316 17344885
-
(2007)
Nat Biotechnol
, vol.25
, Issue.3
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
Olason, P.I.4
Pedersen, A.G.5
Rigina, O.6
Hinsby, A.M.7
Tumer, Z.8
Pociot, F.9
Tommerup, N.10
Moreau, Y.11
Brunak, S.12
-
49
-
-
31344444650
-
A mitogen-activated protein kinase cascade regulating infection-related morphogenesis in Magnaporthe grisea
-
1088005 15749760
-
Zhao X Kim Y Park G Xu JR A mitogen-activated protein kinase cascade regulating infection-related morphogenesis in Magnaporthe grisea Plant Cell 2005, 17(4):1317-1329 1088005 15749760
-
(2005)
Plant Cell
, vol.17
, Issue.4
, pp. 1317-1329
-
-
Zhao, X.1
Kim, Y.2
Park, G.3
Xu, J.R.4
-
50
-
-
33847682903
-
From genes to genomes: A new paradigm for studying fungal pathogenesis in Magnaporthe oryzae
-
17352905
-
Xu JR Zhao X Dean RA From genes to genomes: A new paradigm for studying fungal pathogenesis in Magnaporthe oryzae Adv Genet 2007, 57:175-218 17352905
-
(2007)
Adv Genet
, vol.57
, pp. 175-218
-
-
Xu, J.R.1
Zhao, X.2
Dean, R.A.3
-
51
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
15223320
-
Bendtsen JD Nielsen H von Heijne G Brunak S Improved prediction of signal peptides: SignalP 3.0 J Mol Biol 2004, 340(4):783-795 15223320
-
(2004)
J Mol Biol
, vol.340
, Issue.4
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
53
-
-
34249661675
-
Fungal genomics goes industrial
-
17483839
-
Talbot NJ Fungal genomics goes industrial Nat Biotechnol 2007, 25(5):542-543 17483839
-
(2007)
Nat Biotechnol
, vol.25
, Issue.5
, pp. 542-543
-
-
Talbot, N.J.1
-
54
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Database 308770 14681407
-
Harris MA Clark J Ireland A Lomax J Ashburner M Foulger R Eilbeck K Lewis S Marshall B Mungall C Richter J Rubin GM Blake JA Bult C Dolan M Drabkin H Eppig JT Hill DP Ni L Ringwald M Balakrishnan R Cherry JM Christie KR Costanzo MC Dwight SS Engel S Fisk DG Hirschman JE Hong EL Nash RS Sethuraman A Theesfeld CL Botstein D Dolinski K Feierbach B Berardini T Mundodi S Rhee SY Apweiler R Barrell D Camon E Dimmer E Lee V Chisholm R Gaudet P Kibbe W Kishore R Schwarz EM Sternberg P Gwinn M Hannick L Wortman J Berriman M Wood V de la Cruz N Tonellato P Jaiswal P Seigfried T White R The Gene Ontology (GO) database and informatics resource Nucleic Acids Res 2004, 32 Database D258-261 308770 14681407
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.M.12
Blake, J.A.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.T.17
Hill, D.P.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.M.22
Christie, K.R.23
Costanzo, M.C.24
Dwight, S.S.25
Engel, S.26
Fisk, D.G.27
Hirschman, J.E.28
Hong, E.L.29
Nash, R.S.30
Sethuraman, A.31
Theesfeld, C.L.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.Y.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.M.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
de la Cruz, N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
55
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Database 1347511 16381856
-
Finn RD Mistry J Schuster-Bockler B Griffiths-Jones S Hollich V Lassmann T Moxon S Marshall M Khanna A Durbin R Eddy SR Sonnhammer EL Bateman A Pfam: Clans, web tools and services Nucleic Acids Res 2006, 34 Database D247-251 1347511 16381856
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
56
-
-
23844494458
-
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
-
16094371
-
Gunsalus KC Ge H Schetter AJ Goldberg DS Han JD Hao T Berriz GF Bertin N Huang J Chuang LS Li N Mani R Hyman AA Sonnichsen B Echeverri CJ Roth FP Vidal M Piano F Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis Nature 2005, 436(7052):861-865 16094371
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 861-865
-
-
Gunsalus, K.C.1
Ge, H.2
Schetter, A.J.3
Goldberg, D.S.4
Han, J.D.5
Hao, T.6
Berriz, G.F.7
Bertin, N.8
Huang, J.9
Chuang, L.S.10
Li, N.11
Mani, R.12
Hyman, A.A.13
Sonnichsen, B.14
Echeverri, C.J.15
Roth, F.P.16
Vidal, M.17
Piano, F.18
-
57
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
403769 14597658
-
Shannon P Markiel A Ozier O Baliga NS Wang JT Ramage D Amin N Schwikowski B Ideker T Cytoscape: A software environment for integrated models of biomolecular interaction networks Genome Res 2003, 13(11):2498-2504 403769 14597658
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
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