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Volumn 9, Issue , 2008, Pages

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL PATHWAY; DOMAIN-DOMAIN INTERACTIONS; HOST-PATHOGEN INTERACTIONS; INTERACTION NETWORKS; PATHOGENIC BACTERIUM; PHYTOPATHOGENIC BACTERIA; PREDICTION ALGORITHMS; PROTEIN-PROTEIN INTERACTIONS;

EID: 39549097090     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-41     Document Type: Article
Times cited : (34)

References (30)
  • 2
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • 15550 10655498 10.1073/pnas.97.3.1143
    • Ito T Tashiro K Muta S Ozawa R Chiba T Nishizawa M Yamamoto K Kuhara S Sakaki Y Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins Proc Natl Acad Sci USA 2000, 97(3):1143-1147. 15550 10655498 10.1073/pnas.97.3.1143
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.3 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 3
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • 31875 11283351 10.1073/pnas.061034498
    • Ito T Chiba T Ozawa R Yoshida M Hattori M Sakaki Y A comprehensive two-hybrid analysis to explore the yeast protein interactome Proc Natl Acad Sci USA 2001, 98(8):4569-4574. 31875 11283351 10.1073/pnas.061034498
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.8 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5    Sakaki, Y.6
  • 5
    • 0035202321 scopus 로고    scopus 로고
    • Concepts actuels sur la pathogénie chez les bactéries
    • 11570279 phytopathogènes
    • Boucher C Genin S Arlat M Concepts actuels sur la pathogénie chez les bactéries phytopathogènes C R Acad Sci III 2001, 324(10):915-922. 11570279 phytopathogènes
    • (2001) C R Acad Sci III , vol.324 , Issue.10 , pp. 915-922
    • Boucher, C.1    Genin, S.2    Arlat, M.3
  • 6
    • 0001119910 scopus 로고
    • Current status of the gene-for-gene concept
    • 10.1146/annurev.py.09.090171.001423
    • Flor HH Current status of the gene-for-gene concept Annu Rev Phytopathol 1971, 9:275-296. 10.1146/annurev.py.09.090171.001423
    • (1971) Annu Rev Phytopathol , vol.9 , pp. 275-296
    • Flor, H.H.1
  • 7
    • 0033637353 scopus 로고    scopus 로고
    • HrpB2 and HrpF from Xanthomonas are type III-secreted proteins and essential for pathogenicity and recognition by the host plant
    • 10.1046/j.1365-2958.2000.02173.x 11115117
    • Rossier O Van den Ackerveken G Bonas U HrpB2 and HrpF from Xanthomonas are type III-secreted proteins and essential for pathogenicity and recognition by the host plant Mol Microbiol 2000, 38(4):828-838. 10.1046/ j.1365-2958.2000.02173.x 11115117
    • (2000) Mol Microbiol , vol.38 , Issue.4 , pp. 828-838
    • Rossier, O.1    Van den Ackerveken, G.2    Bonas, U.3
  • 8
    • 4444220080 scopus 로고    scopus 로고
    • New protein-protein interactions identified for the regulatory and structural components and substrates of the type III Secretion system of the phytopathogen Xanthomonas axonopodis Pathovar citri
    • 515140 15342589 10.1128/JB.186.18.6186-6197.2004
    • Alegria MC Docena C Khater L Ramos CH da Silva AC Farah CS New protein-protein interactions identified for the regulatory and structural components and substrates of the type III Secretion system of the phytopathogen Xanthomonas axonopodis Pathovar citri J Bacteriol 2004, 186(18):6186-6197. 515140 15342589 10.1128/JB.186.18.6186-6197.2004
    • (2004) J Bacteriol , vol.186 , Issue.18 , pp. 6186-6197
    • Alegria, M.C.1    Docena, C.2    Khater, L.3    Ramos, C.H.4    da Silva, A.C.5    Farah, C.S.6
  • 9
    • 15144362149 scopus 로고    scopus 로고
    • Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri
    • 1065226 15774874 10.1128/JB.187.7.2315-2325.2005
    • Alegria MC Souza DP Andrade MO Docena C Khater L Ramos CH da Silva AC Farah CS Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri J Bacteriol 2005, 187(7):2315-2325. 1065226 15774874 10.1128/JB.187.7.2315-2325.2005
    • (2005) J Bacteriol , vol.187 , Issue.7 , pp. 2315-2325
    • Alegria, M.C.1    Souza, D.P.2    Andrade, M.O.3    Docena, C.4    Khater, L.5    Ramos, C.H.6    da Silva, A.C.7    Farah, C.S.8
  • 10
    • 33645079391 scopus 로고    scopus 로고
    • Targeting of two effector protein classes to the type III secretion system by a HpaC- and HpaB-dependent protein complex from Xanthomonas campestris pv. vesicatoria
    • 10.1111/j.1365-2958.2005.04924.x 16390446
    • Büttner D Lorenz C Weber E Bonas U Targeting of two effector protein classes to the type III secretion system by a HpaC- and HpaB-dependent protein complex from Xanthomonas campestris pv. vesicatoria Mol Microbiol 2006, 59(2):513-527. 10.1111/ j.1365-2958.2005.04924.x 16390446
    • (2006) Mol Microbiol , vol.59 , Issue.2 , pp. 513-527
    • Büttner, D.1    Lorenz, C.2    Weber, E.3    Bonas, U.4
  • 11
    • 17844364647 scopus 로고    scopus 로고
    • Dimerization of the bacterial effector protein AvrBs3 in the plant cell cytoplasm prior to nuclear import
    • 10.1111/j.1365-313X.2005.02370.x 15807781
    • Gurlebeck D Szurek B Bonas U Dimerization of the bacterial effector protein AvrBs3 in the plant cell cytoplasm prior to nuclear import Plant J 2005, 42(2):175-187. 10.1111/j.1365-313X.2005.02370.x 15807781
    • (2005) Plant J , vol.42 , Issue.2 , pp. 175-187
    • Gurlebeck, D.1    Szurek, B.2    Bonas, U.3
  • 17
    • 0030792253 scopus 로고    scopus 로고
    • SCOP: A structural classification of proteins database
    • 146380 9016544 10.1093/nar/25.1.236
    • Hubbard TJ Murzin AG Brenner SE Chothia C SCOP: A structural classification of proteins database Nucleic acids research 1997, 25(1):236-239. 146380 9016544 10.1093/nar/25.1.236
    • (1997) Nucleic Acids Research , vol.25 , Issue.1 , pp. 236-239
    • Hubbard, T.J.1    Murzin, A.G.2    Brenner, S.E.3    Chothia, C.4
  • 18
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic acids research 1997, 25(17):3389-3402. 146917 9254694 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 19
    • 25144431896 scopus 로고    scopus 로고
    • Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)
    • 10.1093/bioinformatics/bti512 15914543
    • Park D Lee S Bolser D Schroeder M Lappe M Oh D Bhak J Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map) Bioinformatics (Oxford, England) 2005, 21(15):3234-3240. 10.1093/bioinformatics/bti512 15914543
    • (2005) Bioinformatics (Oxford, England) , vol.21 , Issue.15 , pp. 3234-3240
    • Park, D.1    Lee, S.2    Bolser, D.3    Schroeder, M.4    Lappe, M.5    Oh, D.6    Bhak, J.7
  • 20
    • 0035970298 scopus 로고    scopus 로고
    • Mapping protein family interactions: Intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast
    • 10.1006/jmbi.2001.4526 11273711
    • Park J Lappe M Teichmann SA Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast Journal of molecular biology 2001, 307(3):929-938. 10.1006/jmbi.2001.4526 11273711
    • (2001) Journal of Molecular Biology , vol.307 , Issue.3 , pp. 929-938
    • Park, J.1    Lappe, M.2    Teichmann, S.A.3
  • 23
    • 0033930882 scopus 로고    scopus 로고
    • BIND - A data specification for storing and describing biomolecular interactions, molecular complexes and pathways
    • 10.1093/bioinformatics/16.5.465 10871269
    • Bader GD Hogue CW BIND - a data specification for storing and describing biomolecular interactions, molecular complexes and pathways Bioinformatics (Oxford, England) 2000, 16(5):465-477. 10.1093/ bioinformatics/16.5.465 10871269
    • (2000) Bioinformatics (Oxford, England) , vol.16 , Issue.5 , pp. 465-477
    • Bader, G.D.1    Hogue, C.W.2
  • 28
    • 0031813130 scopus 로고    scopus 로고
    • Pfam: Multiple sequence alignments and HMM-profiles of protein domains
    • 147209 9399864 10.1093/nar/26.1.320
    • Sonnhammer EL Eddy SR Birney E Bateman A Durbin R Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic acids research 1998, 26(1):320-322. 147209 9399864 10.1093/nar/26.1.320
    • (1998) Nucleic Acids Research , vol.26 , Issue.1 , pp. 320-322
    • Sonnhammer, E.L.1    Eddy, S.R.2    Birney, E.3    Bateman, A.4    Durbin, R.5
  • 29
    • 13844264506 scopus 로고    scopus 로고
    • iPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    • 10.1093/bioinformatics/bti011 15353450
    • Finn RD Marshall M Bateman A iPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions Bioinformatics (Oxford, England) 2005, 21(3):410-412. 10.1093/bioinformatics/bti011 15353450
    • (2005) Bioinformatics (Oxford, England) , vol.21 , Issue.3 , pp. 410-412
    • Finn, R.D.1    Marshall, M.2    Bateman, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.