The linkage between ribosomal crystallography, metal ions, heteropolytungstates and functional flexibility

Journal of Molecular Structure

Volumn 890, Issue 1-3, 2008, Pages 289-294

  Bashan, Anat ^a   Yonath, Ada ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Crystal order; Heteropolytungstates; Protein S2; Ribosomal functional flexibility; Ribosome

Indexed keywords

CRYSTALLOGRAPHY; ELECTROLYSIS; MACROMOLECULES; METAL IONS; MINERALOGY; NUCLEIC ACIDS; SUPRAMOLECULAR CHEMISTRY; TRACE ANALYSIS;

CRYSTAL ORDER; HETEROPOLYTUNGSTATES; PROTEIN S2; RIBOSOMAL FUNCTIONAL FLEXIBILITY; RIBOSOME;

IONS;

EID: 53949121391     PISSN: 00222860     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molstruc.2008.03.043     Document Type: Article

References (90)

1. Ban N., Nissen P., Hansen J., et al. Science 289 (2000) 905
2. Schluenzen F., Tocilj A., Zarivach R., et al. Cell 102 (2000) 615
3. Wimberly B.T., Brodersen D.E., Clemons Jr. W.M., et al. Nature 407 (2000) 327
4. Harms J., Schluenzen F., Zarivach R., et al. Cell 107 (2001) 679
5. Schuwirth B.S., Borovinskaya M.A., Hau C.W., et al. Science 310 (2005) 827
6. Nissen P., Hansen J., Ban N., et al. Science 289 (2000) 920
7. Yusupov M.M., Yusupova G.Z., Baucom A., et al. Science 292 (2001) 883
8. Bashan A., Agmon I., Zarivach R., et al. Mol. Cell 11 (2003) 91
9. Selmer M., Dunham C.M., Murphy Iv F.V., et al. Science 313 (2006) 1935
10. Korostelev A., Trakhanov S., Laurberg M., et al. Cell 126 (2006) 1065
11. Hougland J.L., Kravchuk A.V., Herschlag D., et al. PLoS Biol. 3 (2005) e277
12. Fedor M.J., and Williamson J.R. Nat. Rev. Mol. Cell Biol. 6 (2005) 399
13. Woodson S.A. Curr. Opin. Chem. Biol. 9 (2005) 104
14. Pyle M. J. Biol. Inorg. Chem. 7 (2002) 679
15. Rupert P.B., and Ferre-D'Amare A.R. Nature 410 (2001) 780
16. Hanna R., and Doudna J.A. Curr. Opin. Chem. Biol. 4 (2000) 166
17. Leclerc F., and Karplus M. J. Phys. Chem. B 110 (2006) 3395
18. Lonnberg T., and Lonnberg H. Curr. Opin. Chem. Biol. 9 (2005) 665
19. Cramer P., Bushnell D.A., and Kornberg R.D. Science 292 (2001) 1863
20. Gnatt A.L., Cramer P., Fu J., et al. Science 292 (2001) 1876
21. Fusz S., Eisenfuhr A., Srivatsan S.G., et al. Chem. Biol. 12 (2005) 941
22. Stahley M.R., and Strobel S.A. Science 309 (2005) 1587
23. Guo F., Gooding A.R., and Cech T.R. Mol. Cell 16 (2004) 351
24. Golden B.L., Kim H., and Chase E. Nat. Struct. Mol. Biol. 12 (2005) 82
25. Cate J.H., Gooding A.R., Podell E., et al. Science 273 (1996) 1678
26. Stahley M.R., and Strobel S.A. Curr. Opin. Struct. Biol. 16 (2006) 319
27. Nahas M.K., Wilson T.J., Hohng S., et al. Nat. Struct. Mol. Biol. 11 (2004) 1107
28. Jiang Y.F., Xiao M., Yin P., et al. RNA 12 (2006) 561
29. Serganov A., Polonskaia A., Phan A.T., et al. Nature 441 (2006) 1167
30. Travers K.J., Boyd N., and Herschlag D. RNA 13 (2007) 1205
31. Stahley M.R., Adams P.L., Wang J., et al. J. Mol. Biol. 372 (2007) 89
32. Su L.J., Waldsich C., and Pyle A.M. Nucleic Acids Res. 33 (2005) 6674
33. Ke A., Ding F., Batchelor J.D., et al. Structure 15 (2007) 281
34. Vicens Q., and Cech T.R. Trends Biochem. Sci. 31 (2006) 41
35. Kisseleva N., Khvorova A., Westhof E., et al. RNA 11 (2005) 1
36. Waldsich C., and Pyle A.M. J. Mol. Biol. 375 (2008) 572
37. Yang W., Lee J.Y., and Nowotny M. Mol. Cell 22 (2006) 5
38. Koculi E., Hyeon C., Thirumalai D., et al. J. Am. Chem. Soc. 129 (2007) 2676
39. Farver O. Textbook of Drug Design and Discovery. Taylor and Francis Publisher (2002) 368
40. Sugio T., Kuwano H., Hamago Y., et al. J. Biosci. Bioeng. 97 (2004) 378
41. Chan M.K., Mukund S., Kletzin A., et al. Science 267 (1995) 1463
42. Seiffert G.B., Ullmann G.M., Messerschmidt A., et al. Proc. Natl. Acad. Sci. USA 104 (2007) 3073
43. Roy R., and Adams M.W. J. Bacteriol. 184 (2002) 6952
44. Bevers L.E., Hagedoorn P.L., Krijger G.C., et al. J. Bacteriol. 188 (2006) 6498
45. Miskin R., Zamir A., and Elson D. J. Mol. Biol. 54 (1970) 355
46. Bayfield M.A., Dahlberg A.E., Schulmeister U., et al. Proc. Natl. Acad. Sci. USA 98 (2001) 10096
47. Schmeing T.M., Huang K.S., Kitchen D.E., et al. Mol. Cell 20 (2005) 437
48. Schuwirth B.S., Day J.M., Hau C.W., et al. Nat. Struct. Mol. Biol. 13 (2006) 879
49. Pioletti M., Schluenzen F., Harms J., et al. EMBO J. 20 (2001) 1829
50. Frank J. Chem. Biol. 7 (2000) R133
51. VanLoock M.S., Agrawal R.K., Gabashvili I.S., et al. J. Mol. Biol. 304 (2000) 507
52. Yonath A., Harms J., Hansen H.A., et al. Acta Crystallogr. A 54 (1998) 945
53. Gluehmann M., Zarivach R., Bashan A., et al. Methods 25 (2001) 292
54. Yonath A., Glotz C., Gewitz H.S., et al. J. Mol. Biol. 203 (1988) 831
55. Trakhanov S., Yusupov M., Shirokov V., et al. J. Mol. Biol. 209 (1989) 327
56. Harms J., Tocilj A., Levin I., et al. Structure Fold Des. 7 (1999) 931
57. von Bohlen K., Makowski I., Hansen H.A., et al. J. Mol. Biol. 222 (1991) 11
58. Dawson B. Acta Crystallogr. 6 (1953) 113
59. Pope M.T., and Papaconstantinou E. Inorg. Chem. 6 (1967) 1147
60. D'Amour H. Acta Crystallogr. B32 (1976) 729
61. Brown G.M., Noe Spirlet M.R., Busing W.R., et al. Acta Crystallogr. B 33 (1977) 1038
62. Contant R. Inorg. Synth. 27 (1990) 104
63. Xin F., and Pope M.T. Organometallic 13 (1994) 4881
64. Wei X., Dickman M.H., and Pope M.T. Inorg. Chem. 36 (1997) 130
65. Zhang X.Y., O'Connor C.J., Jameson G.B., et al. Inorg. Chem. 35 (1996) 30
66. Sazani G., and Pope M.T. Dalton Trans. (2004) 1989
67. Muller A., Peters F., Pope M.T., et al. Chem. Rev. 98 (1998) 239
68. Belai N., Sadakane M., and Pope M.T. J. Am. Chem. Soc. 123 (2001) 2087
69. Kogan V., Aizenshtat Z., and Neumann R. New J. Chem. 26 (2002) 272
70. Fu J., Gnatt A.L., Bushnell D.A., et al. Cell 98 (1999) 799
71. Lowe J., Stock D., Jap B., et al. Science 268 (1995) 533
72. Ladenstein R., Bacher A., and Huber R. J. Mol. Biol. 195 (1987) 751
73. Alizadeh M.H., Harmalker S.P., Jeannin Y., et al. J. Am. Chem. Soc. 107 (1985) 2662
74. Thygesen J., Weinstein S., Franceschi F., et al. Structure 4 (1996) 513
75. Janell D., Tocilj A., Kolln I., et al. Polyoxometalate Chemistry. In: Pope M.T. (Ed) (2001), Kluwer Academic Publishers. 391
76. Tocilj A., Schluenzen F., Janell D., et al. Proc. Natl. Acad. Sci. USA 96 (1999) 14252
77. Ban N., Nissen P., Hansen J., et al. Nature 400 (1999) 841
78. Auerbach T., Pioletti M., Avila H., et al. J. Biomol. Struct. Dyn. 17 (2000) 617
79. Bashan A., Agmon I., Zarivach R., et al. Cold Spring Harb. Symp. Quant. Biol. 66 (2001) 43
80. Weinstein S., Jahn W., Glotz C., et al. J. Struct. Biol. 127 (1999) 141
81. Bartels H., Gluehmann M., Janell D., et al. Cell. Mol. Biol. (Noisy-le-grand) 46 (2000) 871
82. Clemons Jr. W.M., May J.L., Wimberly B.T., et al. Nature 400 (1999) 833
83. Rudenko G., Henry L., Henderson K., et al. Science 298 (2002) 2353
84. Golden B.L., Gooding A.R., Podell E.R., et al. Science 282 (1998) 259
85. Jeffrey T., Hill C.L., and Judd D.A. Chem. Res. 327-357 (1998) 98
86. Wang X., Liu J., Li J., et al. J. Inorg. Biochem. 279 (2003) 94
87. Cherman J.C., Sinoussi F.C., and Jasmin C. Biochem. Biophys. Res. Commun. 1229 (1975) 65
88. Herve M., Sinoussi-Barre F., Chermann J.C., et al. Biochem. Biophys. Res. Commun. 222 (1983) 116
89. Cotton F.A. Chem. Rev. (1955) 551
90. Cotton F.A., Donahue J.P., Gruhn N.E., Lichtenberger D.L., Murillo C.A., Timmons D.J., Van Dorn L.O., Villagran D., and Wang X. Inorg. Chem. 45 (2006) 201