-
1
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams P.D., Pannu N.S., Read R.J., Brunger A.T. Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc. Natl. Acad. Sci. USA. 94:1997;5018-5023
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
2
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams P.L., Stahley M.R., Kosek A.B., Wang J., Strobel S.A. Crystal structure of a self-splicing group I intron with both exons. Nature. 430:2004;45-50
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
3
-
-
0021241894
-
Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: Implications for biological catalysis by RNA
-
Bass B.L., Cech T.R. Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate. implications for biological catalysis by RNA Nature. 308:1984;820-826
-
(1984)
Nature
, vol.308
, pp. 820-826
-
-
Bass, B.L.1
Cech, T.R.2
-
4
-
-
0023047647
-
Ribozyme inhibitors: Deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor
-
Bass B.L., Cech T.R. Ribozyme inhibitors. deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor Biochemistry. 25:1986;4473-4477
-
(1986)
Biochemistry
, vol.25
, pp. 4473-4477
-
-
Bass, B.L.1
Cech, T.R.2
-
5
-
-
2242431668
-
Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel
-
Bass R.B., Strop P., Barclay M., Rees D.C. Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel. Science. 298:2002;1582-1587
-
(2002)
Science
, vol.298
, pp. 1582-1587
-
-
Bass, R.B.1
Strop, P.2
Barclay, M.3
Rees, D.C.4
-
6
-
-
0025877764
-
Group I intron self-splicing with adenosine: Evidence for a single nucleoside-binding site
-
Been M.D., Perrotta A.T. Group I intron self-splicing with adenosine. evidence for a single nucleoside-binding site Science. 252:1991;434-437
-
(1991)
Science
, vol.252
, pp. 434-437
-
-
Been, M.D.1
Perrotta, A.T.2
-
8
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system. a new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54:1998;905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
9
-
-
0025128877
-
A 3′ splice site-binding sequence in the catalytic core of a group I intron
-
Burke J.M., Esherick J.S., Burfeind W.R., King J.L. A 3′ splice site-binding sequence in the catalytic core of a group I intron. Nature. 344:1990;80-82
-
(1990)
Nature
, vol.344
, pp. 80-82
-
-
Burke, J.M.1
Esherick, J.S.2
Burfeind, W.R.3
King, J.L.4
-
10
-
-
2942571539
-
The Comparative RNA Web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D'Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., et al. The Comparative RNA Web (CRW) site. an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinformatics. 3:2002;2
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
-
12
-
-
0030587890
-
Metal-binding sites in the major groove of a large ribozyme domain
-
Cate J.H., Doudna J.A. Metal-binding sites in the major groove of a large ribozyme domain. Structure. 4:1996;1221-1229
-
(1996)
Structure
, vol.4
, pp. 1221-1229
-
-
Cate, J.H.1
Doudna, J.A.2
-
13
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate J.H., Gooding A.R., Podell E., Zhou K., Golden B.L., Kundrot C.E., Cech T.R., Doudna J.A. Crystal structure of a group I ribozyme domain. principles of RNA packing Science. 273:1996;1678-1685
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
14
-
-
0032881809
-
X-ray crystal structures of 70S ribosome functional complexes
-
Cate J.H., Yusupov M.M., Yusupova G.Z., Earnest T.N., Noller H.F. X-ray crystal structures of 70S ribosome functional complexes. Science. 285:1999;2095-2104
-
(1999)
Science
, vol.285
, pp. 2095-2104
-
-
Cate, J.H.1
Yusupov, M.M.2
Yusupova, G.Z.3
Earnest, T.N.4
Noller, H.F.5
-
15
-
-
0028103275
-
Collaborative Computational Program, Number 4) the CCP4 suite: Programs for protein crystallography
-
CCP4 Collaborative Computational Program, Number 4) The CCP4 suite. programs for protein crystallography Acta Crystallogr. D Biol. Crystallogr. 50:1994;760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
16
-
-
0027247579
-
Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena
-
Christian E.L., Yarus M. Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena. Biochemistry. 32:1993;4475-4480
-
(1993)
Biochemistry
, vol.32
, pp. 4475-4480
-
-
Christian, E.L.1
Yarus, M.2
-
17
-
-
0020469973
-
Making ends meet: A model for RNA splicing in fungal mitochondria
-
Davies R.W., Waring R.B., Ray J.A., Brown T.A., Scazzocchio C. Making ends meet. a model for RNA splicing in fungal mitochondria Nature. 300:1982;719-724
-
(1982)
Nature
, vol.300
, pp. 719-724
-
-
Davies, R.W.1
Waring, R.B.2
Ray, J.A.3
Brown, T.A.4
Scazzocchio, C.5
-
18
-
-
0141507032
-
Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains
-
DeLaBarre B., Brunger A.T. Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains. Nat. Struct. Biol. 10:2003;856-863
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 856-863
-
-
Delabarre, B.1
Brunger, A.T.2
-
20
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
Doudna J.A., Cech T.R. The chemical repertoire of natural ribozymes. Nature. 418:2002;222-228
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.A.1
Cech, T.R.2
-
21
-
-
1242274330
-
A guide to ions and RNA structure
-
Draper D.E. A guide to ions and RNA structure. RNA. 10:2004;335-343
-
(2004)
RNA
, vol.10
, pp. 335-343
-
-
Draper, D.E.1
-
22
-
-
0036601149
-
The role of metal ions in RNA catalysis
-
Fedor M.J. The role of metal ions in RNA catalysis. Curr. Opin. Struct. Biol. 12:2002;289-295
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 289-295
-
-
Fedor, M.J.1
-
23
-
-
0000952473
-
On the treatment of negative intensity observations
-
French G.S., Wilson K.S. On the treatment of negative intensity observations. Acta Crystallogr. A. 34:1978;517-525
-
(1978)
Acta Crystallogr. a
, vol.34
, pp. 517-525
-
-
French, G.S.1
Wilson, K.S.2
-
24
-
-
0031213875
-
Crystals by design: A strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron
-
Golden B.L., Podell E.R., Gooding A.R., Cech T.R. Crystals by design. a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron J. Mol. Biol. 270:1997;711-723
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 711-723
-
-
Golden, B.L.1
Podell, E.R.2
Gooding, A.R.3
Cech, T.R.4
-
25
-
-
0032500731
-
A preorganized active site in the crystal structure of the Tetrahymena ribozyme
-
Golden B.L., Gooding A.R., Podell E.R., Cech T.R. A preorganized active site in the crystal structure of the Tetrahymena ribozyme. Science. 282:1998;259-264
-
(1998)
Science
, vol.282
, pp. 259-264
-
-
Golden, B.L.1
Gooding, A.R.2
Podell, E.R.3
Cech, T.R.4
-
26
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C., Gardiner K., Marsh T., Pace N., Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell. 35:1983;849-857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
27
-
-
0036828951
-
Evolution of Tetrahymena ribozyme mutants with increased structural stability
-
Guo F., Cech T.R. Evolution of Tetrahymena ribozyme mutants with increased structural stability. Nat. Struct. Biol. 9:2002;855-861
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 855-861
-
-
Guo, F.1
Cech, T.R.2
-
28
-
-
0028172551
-
Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures
-
Jiang J.S., Brunger A.T. Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. J. Mol. Biol. 243:1994;100-115
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 100-115
-
-
Jiang, J.S.1
Brunger, A.T.2
-
29
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119
-
(1991)
Acta Crystallogr. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
30
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
Joyce G.F. Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem. 73:2004;791-836
-
(2004)
Annu. Rev. Biochem.
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
31
-
-
0032842642
-
In vitro selection of RNAs with increased tertiary structure stability
-
Juneau K., Cech T.R. In vitro selection of RNAs with increased tertiary structure stability. RNA. 5:1999;1119-1129
-
(1999)
RNA
, vol.5
, pp. 1119-1129
-
-
Juneau, K.1
Cech, T.R.2
-
32
-
-
0035085466
-
Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA-solvent interactions
-
Juneau K., Podell E., Harrington D.J., Cech T.R. Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA-solvent interactions. Structure. 9:2001;221-231
-
(2001)
Structure
, vol.9
, pp. 221-231
-
-
Juneau, K.1
Podell, E.2
Harrington, D.J.3
Cech, T.R.4
-
33
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. Molscript. a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24:1991;946-950
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
34
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger K., Grabowski P.J., Zaug A.J., Sands J., Gottschling D.E., Cech T.R. Self-splicing RNA. autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena Cell. 31:1982;147-157
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
Zaug, A.J.3
Sands, J.4
Gottschling, D.E.5
Cech, T.R.6
-
35
-
-
0027170454
-
Guanosine binding to the Tetrahymena ribozyme: Thermodynamic coupling with oligonucleotide binding
-
McConnell T.S., Cech T.R., Herschlag D. Guanosine binding to the Tetrahymena ribozyme. thermodynamic coupling with oligonucleotide binding Proc. Natl. Acad. Sci. USA. 90:1993;8362-8366
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8362-8366
-
-
McConnell, T.S.1
Cech, T.R.2
Herschlag, D.3
-
36
-
-
0021092830
-
Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members
-
Michel F., Dujon B. Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members. EMBO J. 2:1983;33-38
-
(1983)
EMBO J.
, vol.2
, pp. 33-38
-
-
Michel, F.1
Dujon, B.2
-
37
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F., Westhof E. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:1990;585-610
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
38
-
-
0024427177
-
The guanosine binding site of the Tetrahymena ribozyme
-
Michel F., Hanna M., Green R., Bartel D.P., Szostak J.W. The guanosine binding site of the Tetrahymena ribozyme. Nature. 342:1989;391-395
-
(1989)
Nature
, vol.342
, pp. 391-395
-
-
Michel, F.1
Hanna, M.2
Green, R.3
Bartel, D.P.4
Szostak, J.W.5
-
39
-
-
0025134897
-
Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns
-
a
-
Michel F., Ellington A.D., Couture S., Szostak J.W. Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns. Nature. 347:1990;578-580. a
-
(1990)
Nature
, vol.347
, pp. 578-580
-
-
Michel, F.1
Ellington, A.D.2
Couture, S.3
Szostak, J.W.4
-
40
-
-
0025312678
-
Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: The role of a novel base-pairing interaction in group I introns
-
b
-
Michel F., Netter P., Xu M.Q., Shub D.A. Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4. the role of a novel base-pairing interaction in group I introns Genes Dev. 4:1990;777-788. b
-
(1990)
Genes Dev.
, vol.4
, pp. 777-788
-
-
Michel, F.1
Netter, P.2
Xu, M.Q.3
Shub, D.A.4
-
41
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen P., Hansen J., Ban N., Moore P.B., Steitz T.A. The structural basis of ribosome activity in peptide bond synthesis. Science. 289:2000;920-930
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
42
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
44
-
-
0023927904
-
Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure
-
Richards F.M., Kundrot C.E. Identification of structural motifs from protein coordinate data. secondary structure and first-level supersecondary structure Proteins. 3:1988;71-84
-
(1988)
Proteins
, vol.3
, pp. 71-84
-
-
Richards, F.M.1
Kundrot, C.E.2
-
47
-
-
0033600571
-
Probing the role of metal ions in RNA catalysis: Kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme
-
Shan S.O., Herschlag D. Probing the role of metal ions in RNA catalysis. kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme Biochemistry. 38:1999;10958-10975
-
(1999)
Biochemistry
, vol.38
, pp. 10958-10975
-
-
Shan, S.O.1
Herschlag, D.2
-
48
-
-
0033607225
-
Three metal ions at the active site of the Tetrahymena group I ribozyme
-
a
-
Shan S., Yoshida A., Sun S., Piccirilli J.A., Herschlag D. Three metal ions at the active site of the Tetrahymena group I ribozyme. Proc. Natl. Acad. Sci. USA. 96:1999;12299-12304. a
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12299-12304
-
-
Shan, S.1
Yoshida, A.2
Sun, S.3
Piccirilli, J.A.4
Herschlag, D.5
-
49
-
-
0033600567
-
Protonated 2′-aminoguanosine as a probe of the electrostatic environment of the active site of the Tetrahymena group I ribozyme
-
b
-
Shan S.O., Narlikar G.J., Herschlag D. Protonated 2′-aminoguanosine as a probe of the electrostatic environment of the active site of the Tetrahymena group I ribozyme. Biochemistry. 38:1999;10976-10988. b
-
(1999)
Biochemistry
, vol.38
, pp. 10976-10988
-
-
Shan, S.O.1
Narlikar, G.J.2
Herschlag, D.3
-
51
-
-
0030833215
-
Metal ion catalysis during splicing of premessenger RNA
-
Sontheimer E.J., Sun S., Piccirilli J.A. Metal ion catalysis during splicing of premessenger RNA. Nature. 388:1997;801-805
-
(1997)
Nature
, vol.388
, pp. 801-805
-
-
Sontheimer, E.J.1
Sun, S.2
Piccirilli, J.A.3
-
52
-
-
0033581011
-
DNA polymerases: Structural diversity and common mechanisms
-
Steitz T.A. DNA polymerases. structural diversity and common mechanisms J. Biol. Chem. 274:1999;17395-17398
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17395-17398
-
-
Steitz, T.A.1
-
53
-
-
0027318824
-
Lead cleavage sites in the core structure of group I intron-RNA
-
Streicher B., von Ahsen U., Schroeder R. Lead cleavage sites in the core structure of group I intron-RNA. Nucleic Acids Res. 21:1993;311-317
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 311-317
-
-
Streicher, B.1
Von Ahsen, U.2
Schroeder, R.3
-
54
-
-
0035909314
-
Splicing-related catalysis by protein-free snRNAs
-
Valadkhan S., Manley J.L. Splicing-related catalysis by protein-free snRNAs. Nature. 413:2001;701-707
-
(2001)
Nature
, vol.413
, pp. 701-707
-
-
Valadkhan, S.1
Manley, J.L.2
-
56
-
-
0026341105
-
An axial binding site in the Tetrahymena precursor RNA
-
Yarus M., Illangesekare M., Christian E. An axial binding site in the Tetrahymena precursor RNA. J. Mol. Biol. 222:1991;995-1012
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 995-1012
-
-
Yarus, M.1
Illangesekare, M.2
Christian, E.3
-
57
-
-
0032893740
-
A new metal ion interaction in the Tetrahymena ribozyme reaction revealed by double sulfur substitution
-
Yoshida A., Sun S., Piccirilli J.A. A new metal ion interaction in the Tetrahymena ribozyme reaction revealed by double sulfur substitution. Nat. Struct. Biol. 6:1999;318-321
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 318-321
-
-
Yoshida, A.1
Sun, S.2
Piccirilli, J.A.3
|