-
1
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams P.L., Stahley M.R., Kosek A.B., Wang J., and Strobel S.A. Crystal structure of a self-splicing group I intron with both exons. Nature 430 (2004) 45-50
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
2
-
-
0031790171
-
A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor
-
Basu S., Rambo R.P., Strauss-Soukup J., Cate J.H., Ferre-D'Amare A.R., Strobel S.A., and Doudna J.A. A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor. Nat. Struct. Biol. 5 (1998) 986-992
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 986-992
-
-
Basu, S.1
Rambo, R.P.2
Strauss-Soukup, J.3
Cate, J.H.4
Ferre-D'Amare, A.R.5
Strobel, S.A.6
Doudna, J.A.7
-
3
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
4
-
-
24644454458
-
General acid catalysis by the hepatitis delta virus ribozyme
-
Das S.R., and Piccirilli J.A. General acid catalysis by the hepatitis delta virus ribozyme. Nat. Chem. Biol. 1 (2005) 45-52
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 45-52
-
-
Das, S.R.1
Piccirilli, J.A.2
-
6
-
-
0002198148
-
The role of metal ions in RNA biochemistry
-
Gesteland R.F., Cech T.R., and Atkins J.F. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Feig A.L., and Uhlenbeck O.C. The role of metal ions in RNA biochemistry. In: Gesteland R.F., Cech T.R., and Atkins J.F. (Eds). The RNA World. Second Edition (1999), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York 297-302
-
(1999)
The RNA World. Second Edition
, pp. 297-302
-
-
Feig, A.L.1
Uhlenbeck, O.C.2
-
7
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferre-D'Amare A.R., Zhou K., and Doudna J.A. Crystal structure of a hepatitis delta virus ribozyme. Nature 395 (1998) 567-574
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferre-D'Amare, A.R.1
Zhou, K.2
Doudna, J.A.3
-
8
-
-
4344596976
-
Crystallization of RNA and RNA-protein complexes
-
Ke A., and Doudna J.A. Crystallization of RNA and RNA-protein complexes. Methods 34 (2004) 408-414
-
(2004)
Methods
, vol.34
, pp. 408-414
-
-
Ke, A.1
Doudna, J.A.2
-
9
-
-
2442641641
-
A conformational switch controls hepatitis delta virus ribozyme catalysis
-
Ke A., Zhou K., Ding F., Cate J.H., and Doudna J.A. A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature 429 (2004) 201-205
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.H.4
Doudna, J.A.5
-
10
-
-
33745700326
-
Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme
-
Krasovska M.V., Sefcikova J., Reblova K., Schneider B., Walter N.G., and Sponer J. Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme. Biophys. J. 91 (2006) 626-638
-
(2006)
Biophys. J.
, vol.91
, pp. 626-638
-
-
Krasovska, M.V.1
Sefcikova, J.2
Reblova, K.3
Schneider, B.4
Walter, N.G.5
Sponer, J.6
-
11
-
-
0032419499
-
On the role of magnesium ions in RNA stability
-
Misra V.K., and Draper D.E. On the role of magnesium ions in RNA stability. Biopolymers 48 (1998) 113-135
-
(1998)
Biopolymers
, vol.48
, pp. 113-135
-
-
Misra, V.K.1
Draper, D.E.2
-
12
-
-
0034712097
-
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
-
Nakano S., Chadalavada D.M., and Bevilacqua P.C. General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science 287 (2000) 1493-1497
-
(2000)
Science
, vol.287
, pp. 1493-1497
-
-
Nakano, S.1
Chadalavada, D.M.2
Bevilacqua, P.C.3
-
14
-
-
0037452909
-
Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism
-
Nakano S., Cerrone A.L., and Bevilacqua P.C. Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism. Biochemistry 42 (2003) 2982-2994
-
(2003)
Biochemistry
, vol.42
, pp. 2982-2994
-
-
Nakano, S.1
Cerrone, A.L.2
Bevilacqua, P.C.3
-
15
-
-
33749016245
-
HDV ribozyme activity in monovalent cations
-
Perrotta A.T., and Been M.D. HDV ribozyme activity in monovalent cations. Biochemistry 45 (2006) 11357-11365
-
(2006)
Biochemistry
, vol.45
, pp. 11357-11365
-
-
Perrotta, A.T.1
Been, M.D.2
-
16
-
-
0033215448
-
Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme
-
Perrotta A.T., Shih I., and Been M.D. Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme. Science 286 (1999) 123-126
-
(1999)
Science
, vol.286
, pp. 123-126
-
-
Perrotta, A.T.1
Shih, I.2
Been, M.D.3
-
17
-
-
33745627769
-
Chemical rescue, multiple ionizable groups, and general acid-base catalysis in the HDV genomic ribozyme
-
Perrotta A.T., Wadkins T.S., and Been M.D. Chemical rescue, multiple ionizable groups, and general acid-base catalysis in the HDV genomic ribozyme. RNA 12 (2006) 1282-1291
-
(2006)
RNA
, vol.12
, pp. 1282-1291
-
-
Perrotta, A.T.1
Wadkins, T.S.2
Been, M.D.3
-
18
-
-
0032832044
-
Ribozyme cleavage of a 2,5-phosphodiester linkage: mechanism and a restricted divalent metal-ion requirement
-
Shih I.H., and Been M.D. Ribozyme cleavage of a 2,5-phosphodiester linkage: mechanism and a restricted divalent metal-ion requirement. RNA 5 (1999) 1140-1148
-
(1999)
RNA
, vol.5
, pp. 1140-1148
-
-
Shih, I.H.1
Been, M.D.2
-
19
-
-
0035852640
-
Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage
-
Shih I.H., and Been M.D. Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage. Proc. Natl. Acad. Sci. USA 98 (2001) 1489-1494
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1489-1494
-
-
Shih, I.H.1
Been, M.D.2
-
20
-
-
0035997396
-
Catalytic strategies of the hepatitis delta virus ribozymes
-
Shih I.H., and Been M.D. Catalytic strategies of the hepatitis delta virus ribozymes. Annu. Rev. Biochem. 71 (2002) 887-917
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 887-917
-
-
Shih, I.H.1
Been, M.D.2
-
21
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz T.A., and Steitz J.A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl. Acad. Sci. USA 90 (1993) 6498-6502
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
22
-
-
0027305803
-
Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions
-
Suh Y.A., Kumar P.K., Taira K., and Nishikawa S. Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions. Nucleic Acids Res. 21 (1993) 3277-3280
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3277-3280
-
-
Suh, Y.A.1
Kumar, P.K.2
Taira, K.3
Nishikawa, S.4
-
23
-
-
0028446537
-
A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses
-
Tanner N.K., Schaff S., Thill G., Petit-Koskas E., Crain-Denoyelle A.M., and Westhof E. A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses. Curr. Biol. 4 (1994) 488-498
-
(1994)
Curr. Biol.
, vol.4
, pp. 488-498
-
-
Tanner, N.K.1
Schaff, S.2
Thill, G.3
Petit-Koskas, E.4
Crain-Denoyelle, A.M.5
Westhof, E.6
-
24
-
-
0035793217
-
A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion
-
Wadkins T.S., Shih I., Perrotta A.T., and Been M.D. A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion. J. Mol. Biol. 305 (2001) 1045-1055
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 1045-1055
-
-
Wadkins, T.S.1
Shih, I.2
Perrotta, A.T.3
Been, M.D.4
-
25
-
-
0003463893
-
Human hepatitis delta virus RNA subfragments contain an autocleavage activity
-
Wu H.N., Lin Y.J., Lin F.P., Makino S., Chang M.F., and Lai M.M. Human hepatitis delta virus RNA subfragments contain an autocleavage activity. Proc. Natl. Acad. Sci. USA 86 (1989) 1831-1835
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1831-1835
-
-
Wu, H.N.1
Lin, Y.J.2
Lin, F.P.3
Makino, S.4
Chang, M.F.5
Lai, M.M.6
-
26
-
-
2142758648
-
Ion binding affinity in the cavity of the KcsA potassium channel
-
Zhou Y., and MacKinnon R. Ion binding affinity in the cavity of the KcsA potassium channel. Biochemistry 43 (2004) 4978-4982
-
(2004)
Biochemistry
, vol.43
, pp. 4978-4982
-
-
Zhou, Y.1
MacKinnon, R.2
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