-
1
-
-
9344232753
-
Crystal structure of a group I intron splicing intermediate
-
Adams, P.L., Stahley, M.R., Gill, M.L., Kosek, A.B., Wang, J., and Strobel, S.A. 2004. Crystal structure of a group I intron splicing intermediate. RNA 10: 1867-1887.
-
(2004)
RNA
, vol.10
, pp. 1867-1887
-
-
Adams, P.L.1
Stahley, M.R.2
Gill, M.L.3
Kosek, A.B.4
Wang, J.5
Strobel, S.A.6
-
2
-
-
0034103611
-
A collapsed non-native RNA folding state
-
Buchmueller, K.L., Webb, A.E., Richardson, D.A., and Weeks, K.M. 2000. A collapsed non-native RNA folding state. Nat. Struct. Biol. 7: 362-366.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 362-366
-
-
Buchmueller, K.L.1
Webb, A.E.2
Richardson, D.A.3
Weeks, K.M.4
-
3
-
-
0042009114
-
The fastest global events in RNA folding: Electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme
-
Das, R., Kwok, L.W., Millett, I.S., Bai, Y., Mills, T.T., Jacob, J., Maskel, G.S., Seifert, S., Mochrie, S.G., Thiyagarajan, P., et al. 2003. The fastest global events in RNA folding: Electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme. J. Mol. Biol. 332: 311-319.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 311-319
-
-
Das, R.1
Kwok, L.W.2
Millett, I.S.3
Bai, Y.4
Mills, T.T.5
Jacob, J.6
Maskel, G.S.7
Seifert, S.8
Mochrie, S.G.9
Thiyagarajan, P.10
-
4
-
-
0038170015
-
Metal ion binding to catalytic RNA molecules
-
DeRose, V.J. 2003. Metal ion binding to catalytic RNA molecules. Curr. Opin. Struct. Biol. 13: 317-324.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 317-324
-
-
DeRose, V.J.1
-
5
-
-
1242274330
-
A guide to ions and RNA structure
-
Draper, D.E. 2004. A guide to ions and RNA structure. RNA 10: 335-343.
-
(2004)
RNA
, vol.10
, pp. 335-343
-
-
Draper, D.E.1
-
6
-
-
11444263264
-
Crystal structure of a phage Twort group I ribozyme-product complex
-
Golden, B.L., Kim, H., and Chase, E. 2005. Crystal structure of a phage Twort group I ribozyme-product complex. Nat. Struct. Mol. Biol. 12: 82-89.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
Kim, H.2
Chase, E.3
-
7
-
-
8644229237
-
Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site
-
Guo, F., Gooding, A.R., and Cech, T.R. 2004. Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site. Mol. Cell 16: 351-362.
-
(2004)
Mol. Cell
, vol.16
, pp. 351-362
-
-
Guo, F.1
Gooding, A.R.2
Cech, T.R.3
-
8
-
-
0035830964
-
Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations
-
Heilman-Miller, S.L., Thirumalai, D., and Woodson, S.A. 2001. Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations. J. Mol. Biol. 306: 1157-1166.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1157-1166
-
-
Heilman-Miller, S.L.1
Thirumalai, D.2
Woodson, S.A.3
-
9
-
-
4344569647
-
The contribution of metal ions to the structural stability of the large ribosomal subunit
-
Klein, D.J., Moore, P.B., and Steitz, T.A. 2004. The contribution of metal ions to the structural stability of the large ribosomal subunit. RNA 10: 1366-1379.
-
(2004)
RNA
, vol.10
, pp. 1366-1379
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
10
-
-
17644377267
-
Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup
-
Li, Z. and Zhang, Y. 2005. Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup. Nucleic Acids Res. 33: 2118-2128.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2118-2128
-
-
Li, Z.1
Zhang, Y.2
-
11
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F. and Westhof, F. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216: 585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, F.2
-
12
-
-
1042265194
-
Compaction of a bacterial group I ribozyme coincides with the assembly of core helices
-
Perez-Salas, U.A., Rangan, P., Krueger, S., Briber, R.M., Thirumalai, D., and Woodson, S.A. 2004. Compaction of a bacterial group I ribozyme coincides with the assembly of core helices. Biochemistry 43: 1746-1753.
-
(2004)
Biochemistry
, vol.43
, pp. 1746-1753
-
-
Perez-Salas, U.A.1
Rangan, P.2
Krueger, S.3
Briber, R.M.4
Thirumalai, D.5
Woodson, S.A.6
-
13
-
-
0037039464
-
Exploring the folding landscape of a structured RNA
-
Russell, R., Zhuang, X., Babcock, H.P., Millett, I.S., Doniach, S., Chu, S., and Herschlag, D. 2002. Exploring the folding landscape of a structured RNA. Proc. Natl. Acad. Sci. 99: 155-160.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 155-160
-
-
Russell, R.1
Zhuang, X.2
Babcock, H.P.3
Millett, I.S.4
Doniach, S.5
Chu, S.6
Herschlag, D.7
-
14
-
-
8444229753
-
Strategies for RNA folding and assembly
-
Schroeder, R., Barta, A., and Semrad, K. 2004. Strategies for RNA folding and assembly. Nat. Rev. Mol. Cell Biol. 5: 908-919.
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
15
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
Sclavi, B., Sullivan, M., Chance, M.R., Brenowitz, M., and Woodson, S.A. 1998. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science 279: 1940-1943.
-
(1998)
Science
, vol.279
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
16
-
-
4444370899
-
Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme
-
Shcherbakova, I., Gupta, S., Chance, M.R., and Brenowitz, M. 2004. Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme. J. Mol. Biol. 342: 1431-1442.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1431-1442
-
-
Shcherbakova, I.1
Gupta, S.2
Chance, M.R.3
Brenowitz, M.4
-
17
-
-
0036894697
-
Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme
-
Takamoto, K., He, Q., Morris, S., Chance, M.R., and Brenowitz, M. 2002. Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme. Nat. Struct. Biol. 9: 928-933.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 928-933
-
-
Takamoto, K.1
He, Q.2
Morris, S.3
Chance, M.R.4
Brenowitz, M.5
-
18
-
-
6344242969
-
Principles of RNA compaction: Insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations
-
Takamoto, K., Das, R., He, Q., Doniach, S., Brenowitz, M., Herschlag, D., and Chance M.R. 2004. Principles of RNA compaction: Insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations. J. Mol. Biol. 343: 1195-1206.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1195-1206
-
-
Takamoto, K.1
Das, R.2
He, Q.3
Doniach, S.4
Brenowitz, M.5
Herschlag, D.6
Chance, M.R.7
-
19
-
-
0034743153
-
Early events in RNA folding
-
Thirumalai, D., Lee, N., Woodson, S.A., and Klimov, D. 2001. Early events in RNA folding. Annu. Rev. Phys. Chem. 52: 751-762.
-
(2001)
Annu. Rev. Phys. Chem.
, vol.52
, pp. 751-762
-
-
Thirumalai, D.1
Lee, N.2
Woodson, S.A.3
Klimov, D.4
-
20
-
-
16244363320
-
Metal ions and RNA folding: A highly charged topic with a dynamic future
-
Woodson, S.A. 2005. Metal ions and RNA folding: A highly charged topic with a dynamic future. Curr. Opin. Chem. Biol. 92: 104-109.
-
(2005)
Curr. Opin. Chem. Biol.
, vol.92
, pp. 104-109
-
-
Woodson, S.A.1
-
21
-
-
0242317691
-
Concerted folding of a Candida ribozyme into the catalytically active structure posterior to a rapid RNA compaction
-
Xiao, M., Leibowitz, M.J., and Zhang, Y. 2003. Concerted folding of a Candida ribozyme into the catalytically active structure posterior to a rapid RNA compaction. Nucleic Acids Res. 31: 3901-3908.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3901-3908
-
-
Xiao, M.1
Leibowitz, M.J.2
Zhang, Y.3
-
22
-
-
23844516852
-
A peripheral element assembles the compact core structure essential for group I intron self-splicing
-
Xiao, M., Li, T., Yuan, X., Shang, Y., Wang, F., Chen, S., and Zhang, Y. 2005. A peripheral element assembles the compact core structure essential for group I intron self-splicing. Nucleic Acids Res. 33: 4602-4611.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4602-4611
-
-
Xiao, M.1
Li, T.2
Yuan, X.3
Shang, Y.4
Wang, F.5
Chen, S.6
Zhang, Y.7
-
23
-
-
11144256451
-
Fast formation of the P3P7 pseudoknot: A strategy for efficient folding of the catalytically active ribozyme
-
Zhang, L., Xiao, M., Lu, C., and Zhang, Y. 2005. Fast formation of the P3P7 pseudoknot: A strategy for efficient folding of the catalytically active ribozyme. RNA 111: 59-69.
-
(2005)
RNA
, vol.111
, pp. 59-69
-
-
Zhang, L.1
Xiao, M.2
Lu, C.3
Zhang, Y.4
-
24
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
Zhuang, X.W., Bartley, L.E., Babcock, H.P., Russell, R., Ha, T., Herschlag, D., and Chu, S. 2000. A single-molecule study of RNA catalysis and folding. Science 288: 2048-2051.
-
(2000)
Science
, vol.288
, pp. 2048-2051
-
-
Zhuang, X.W.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.5
Herschlag, D.6
Chu, S.7
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