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Volumn 298, Issue 5602, 2002, Pages 2353-2358

Structure of the LDL receptor extracellular domain at endosomal pH

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CHOLESTEROL; CRYSTAL GROWTH; CRYSTAL STRUCTURE; EPIDEMIOLOGY; PH;

EID: 0037147281     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1078124     Document Type: Article
Times cited : (407)

References (53)
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    • note
    • 2. The crystals contained one molecule in the asymmetric unit and 74% solvent. Micromolar amounts of sodium 12-tungstophosphate were soaked into crystals to prepare for the multiwavelength anomalous diffraction (MAD) experiment. The crystals cracked upon soaking and were radiation sensitive, so hundreds had to be screened for isomorphous pieces suitable for data collection under cryogenic conditions.
  • 29
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    • note
    • free is 39.2%, calculated with a test set of 7% of the total reflections. The model has root mean square (rms) bond-length deviations of 0.03 Å and 4.9° for bond angles. The model has 583 residues in the most favored and allowed regions and 58 in the generous region, whereas six residues are currently in the unfavorable regions of the Ramachandran plot [PROCHECK (43)]. Figures were made with CLUSTAL W (48), MOLSCRIPT (49), RASTER 3D (50), and GRASP (51).
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    • note
    • Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; Y, Tyr; and X, any amino acid.
  • 53
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    • note
    • We thank the staff at the synchrotrons APS ID-19 and ALS 5.0.2 and 8.2.1 for excellent support, Y. Chelliah for initial studies on the insect cell overexpression system, M. Machius and R. Sunahara for crucial discussions, and T. C. Südhof and M. Machius for reviewing the manuscript. J.L.G. and M.S.B. acknowledge the support of grants from the NIH (HL20948) and the Perot Family Foundation. The atomic coordinates have been deposited to the Protein Data Bank, accession code 1N7D.


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