Apoptosis, autophagy, and more

International Journal of Biochemistry and Cell Biology

Volumn 36, Issue 12, 2004, Pages 2405-2419

  Lockshin, Richard A ^a   Zakeri, Zahra ^b  

^a ST JOHN'S UNIVERSITY   (United States)

^b CITY UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE;

APOPTOSIS; AUTOPHAGY; CELL DEATH; CELL FUNCTION; CELL TYPE; ENZYME ACTIVITY; ENZYME INHIBITION; HOMEOSTASIS; HUMAN; NECROSIS; NONHUMAN; NUTRITION; PHAGOCYTOSIS; PROTEIN DEGRADATION; REGULATORY MECHANISM; REVIEW; SIGNAL TRANSDUCTION;

ANIMALS; APOPTOSIS; AUTOPHAGY; CELL DEATH; HUMANS; LYSOSOMES;

EID: 4344594807     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biocel.2004.04.011     Document Type: Review

References (90)

1. Ahn J.S., Jang I.S., Kim D.I., Cho K.A., Park Y.H., Kim K., et al. Aging-associated increase of gelsolin for apoptosis resistance. Biochem. Biophys. Res. Commun. 312:2003;1335-1341
2. Allombert-Blaise C., Tamiji S., Mortier L., Fauvel H., Tual M., Delaporte E., et al. Terminal differentiation of human epidermal keratinocytes involves mitochondria- and caspase-dependent cell death pathway. Cell Death Differ. 10:2003;850-852
3. Baehrecke E.H. Autophagic programmed cell death in Drosophila. Cell Death Differ. 10:2003;940-945
4. Bauvy C., Gane P., Arico S., Codogno P., Ogier-Denis E. Autophagy delays sulindac sulfide-induced apoptosis in the human intestinal colon cancer cell line HT-29. Exp. Cell Res. 268:2001;139-149
5. Bergamini E., Cavallini G., Donati A., Gori Z. The anti-ageing effects of caloric restriction may involve stimulation of macroautophagy and lysosomal degradation, and can be intensified pharmacologically. Biomed. Pharmacother. 57:2003;203-208
6. Birge, R. B. (2004). The recognition and engulfment of apoptotic cells by phagocytes. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 311-338). New York: Wiley-Liss.
7. Bossy-Wetzel E., Barsoum M.J., Godzik A., Schwarzenbacher R., Lipton S.A. Mitochondrial fission in apoptosis. Curr. Opin. Cell Biol. 15:2003;706-716
8. Boya P., Gonzalez-Polo R.A., Poncet D., Andreau K., Vieira H.L., Roumier T., et al. Mitochondrial membrane permeabilization is a critical step of lysosome-initiated apoptosis induced by hydroxychloroquine. Oncogene. 22:2003a;3927-3936
9. Boya P., Andreau K., Poncet D., Zamzami N., Perfettini J.L., Metivier D., et al. Lysosomal membrane permeabilization induces cell death in a mitochondrion-dependent fashion. J. Exp. Med. 197:2003b;1323-1334
10. Brunk U.T., Terman A. The mitochondrial-lysosomal axis theory of aging: Accumulation of damaged mitochondria as a result of imperfect autophagocytosis. Eur. J. Biochem. 269:2002;1996-2002
11. Bursch, W., Ellinger, A., Gerner, C., & Schulte-Hermann, R. (2004). Caspase independent and autophagic cell death. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 275-310). New York: Wiley-Liss.
12. Cardenas-Aguayo Mdel C., Santa-Olalla J., Baizabal J.M., Salgado L.M., Covarrubias L. Growth factor deprivation induces an alternative non-apoptotic death mechanism that is inhibited by Bcl2 in cells derived from neural precursor cells. J Hematother. Stem Cell Res. 12:2003;735-748
13. Cataldo A.M., Hamilton D.J., Barnett J.L., Paskevich P.A., Nixon R.A. Properties of the endosomal-lysosomal system in the human central nervous system: Disturbances mark most neurons in populations at risk to degenerate in Alzheimer's disease. J. Neurosci. 16:1996;186-199
14. Cerri P.S., Boabaid F., Katchburian E. Combined TUNEL and TRAP methods suggest that apoptotic bone cells are inside vacuoles of alveolar bone osteoclasts in young rats. J. Periodontal Res. 38:2003;223-226
15. Cho Y.M., Bae S.H., Choi B.K., Cho S.Y., Song C.W., Yoo J.K., et al. Differential expression of the liver proteome in senescence accelerated mice. Proteomics. 3:2003;1883-1894
16. Clarke P.G.H., Clarke S. Nineteenth century research on naturally occurring cell death and related phenomena. Anat. Embryol. 193:1996;81-99
17. Cornillon S., Foa C., Davoust J., Buonavista N., Gross J.D., Golstein P. Programmed cell death in Dictyostelium. J. Cell Sci. 107:1994;2691-2704
18. Cuervo, A. M. (2003). Autophagy and aging - when "all you can eat" is yourself. Sci. Aging Knowledge Environ. Sep 10, 2003 (36) pe2.
19. Cuervo A.M. Autophagy: In sickness and in health. Trends Cell Biol. 14:2004;70-77
20. Cuervo A.M., Dice J.F. Age-related decline in chaperone-mediated autophagy. J. Biol. Chem. 275:2000;31505-31513
21. Del Roso A., Vittorini S., Cavallini G., Donati A., Gori Z., Masini M., et al. Ageing-related changes in the in vivo function of rat liver macroautophagy and proteolysis. Exp. Gerontol. 38:2003;519-527
22. Dirks A.J., Leeuwenburgh C. Aging and lifelong calorie restriction result in adaptations of skeletal muscle apoptosis repressor, apoptosis-inducing factor, X-linked inhibitor of apoptosis, caspase-3, and caspase-12. Free Radic. Biol Med. 36:2004;27-39
23. Ditzel M., Wilson R., Tenev T., Zachariou A., Paul A., Deas E., et al. Degradation of DIAP1 by the N-end rule pathway is essential for regulating apoptosis. Nat. Cell Biol. 5:2003;467-473
24. Donati A., Cavallini G., Paradiso C., Vittorini S., Pollera M., Gori Z., et al. Age-related changes in the autophagic proteolysis of rat isolated liver cells: Effects of antiaging dietary restrictions. J. Gerontol. A Biol. Sci. Med. Sci. 56:2001;B375-B383
25. Ermak G., Davies K.J. Calcium and oxidative stress: From cell signaling to cell death. Mol. Immunol. 38:2002;713-721
26. Ferri K.F., Kroemer G. Organelle-specific initiation of cell death pathways. Nat. Cell Biol. 3:2001;E255-E263
27. Fraker P.J., Lill-Elghanian D.A. The many roles of apoptosis in immunity as modified by aging and nutritional status. J Nutr. Health Aging. 8:2004;56-63
28. Gandarillas A., Goldsmith L.A., Gschmeissner S., Leigh I.M., Watt F.M. Evidence that apoptosis and terminal differentiation of epidermal keratinocytes are distinct processes. Exp. Dermatol. 8:1999;71-79
29. Gorski S.M., Chittaranjan S., Pleasance E.D., Freeman J.D., Anderson C.L., Varhol R.J., et al. A SAGE approach to discovery of genes involved in autophagic cell death. Curr. Biol. 13:2003;358-363
30. Grimm L.M., Goldberg A.L., Poirier G.G., Schwartz L.M., Osborne B.A. Proteasomes play an essential role in thymocyte apoptosis. EMBO J. 15:1996;3835-3844
31. Guenette R.S., Mooibroek M., Wong K., Wong P., Tenniswood M. Cathepsin B, a cysteine protease implicated in metastatic progression. Eur. J. Biochem. 226:1994;311-321
32. Guimaraes C.A., Benchimol M., Amarante-Mendes G.P., Linden R. Alternative programs of cell death in developing retinal tissue. J. Biol. Chem. 278:2003;41938-41946
33. Haas A.L., Baboshina O., Williams B., Schwartz L.M. Coordinated induction of the ubiquitin conjugation pathway accompanies the developmentally programmed death of insect skeletal muscle. J. Biol. Chem. 270:1995;9407-9412
34. Hu J., Fink D., Mata M. Microarray analysis suggests the involvement of proteasomes, lysosomes, and matrix metalloproteinases in the response of motor neurons to root avulsion. Eur. J. Neurosci. 16:2002;1409-1416
35. Inbal B., Bialik S., Sabanay I., Shani G., Kimchi A. DAP kinase and DRP-1 mediate membrane blebbing and the formation of autophagic vesicles during programmed cell death. J. Cell Biol. 157:2002;455-468
36. Ishizaki Y., Jacobson M.D., Raff M.C. A role for caspases in lens fiber differentiation. J. Cell Biol. 140:1998;153-158
37. Juhasz G., Csikos G., Sinka R., Erdelyi M., Sass M. The Drosophila homolog of Aut1 is essential for autophagy and development. FEBS Lett. 543:2003;154-158
38. Kadowaki M., Kanazawa T. Amino acids as regulators of proteolysis. J. Nutr. 133:2003;2052S-2056S
39. Kimchi A. A cell death-promoting kinase. Nat. Struct. Biol. 8:2001;824-826
40. Klionsky D.J., Emr S.D. Autophagy as a regulated pathway of cellular degradation. Science. 290:2000;1717-1721
41. Lang-Rollin I.C., Rideout H.J., Noticewala M., Stefanis L. Mechanisms of caspase-independent neuronal death: Energy depletion and free radical generation. J. Neurosci. 23:2003;11015-11025
42. Ledda-Columbano G.M., Coni P., Curto M., Giacomini L., Faa G., Oliverio S., et al. Induction of two different modes of cell death, apoptosis and necrosis, in rat liver after a single dose of thioacetamide. Am. J. Pathol. 139:1991;1099-1109
43. Lee C.Y., Clough E.A., Yellon P., Teslovich T.M., Stephan D.A., Baehrecke E.H. Genome-wide analyses of steroid- and radiation-triggered programmed cell death in Drosophila. Curr. Biol. 13:2003;350-357
44. Levraud, J. -P., Adam, M., Luciani, M. -F., Aubry, L., Klein, G., & Golstein, P. (2004). Cell death in Dictyostelium: Assessing a genetic approach. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 59-78). New York: Wiley-Liss.
45. Lippens S., Kockx M., Knaapen M., Mortier L., Polakowska R., Verheyen A., et al. Epidermal differentiation does not involve the pro-apoptotic executioner caspases. Cell Death Differ. 7:2000;1218-1224
46. Locke M. Surface membranes, golgi complexes, and vacuolar systems. Annu. Rev. Entomol. 48a:2003;1-27
47. Locke M., McMahon J.T. The origin and fate of microbodies in the fat body of an insect. J. Cell Biol. 48:1971;61-78
48. Lockshin, R. A. (1969). Lysosomes in insects. In J.T. Dingle & H. B. Fell (Eds.), Lysosomes in biology and pathology (pp. 363-391). Amsterdam: North Holland Publishing.
49. Lockshin R.A. The early modern period in cell death. Cell Death Differ. 4:1997;347-351
50. Lockshin R.A., Zakeri Z. Programmed cell death and apoptosis: Origins of the theory. Nat. Rev. Mol. Cell Biol. 2:2001;545-550
51. Lockshin R.A., Zakeri Z. Caspase-independent cell deaths. Curr. Opin. Cell Biol. 14:2002;727-733
52. Lockshin, R. A., & Zakeri, Z. (2004a). When cells die II. New York: Wiley-Liss.
53. Lockshin, R. A., & Zakeri, Z. (2004b). Introduction. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 3-26). New York: Wiley-Liss.
54. Lockshin R.A., Osborne B.A., Zakeri Z. Cell death in the third millennium. Cell Death Differ. 7:2000;2-7
55. Mammone T., Gan D., Collins D., Lockshin R.A., Marenus K., Maes D. Successful separation of apoptosis and necrosis pathways in HaCaT keratinocyte cells induced by UVB irradiation. Cell Biol. Toxicol. 16:2000;293-302
56. Martin D.N., Baehrecke E.H. Caspases function in autophagic programmed cell death in Drosophila. Development. 131:2004;275-284
57. Melendez A., Talloczy Z., Seaman M., Eskelinen E.L., Hall D.H., Levine B. Autophagy genes are essential for dauer development and life-span extension in C. elegans. Science. 301:2003;1387-1391
58. Mills K.R., Reginato M., Debnath J., Queenan B., Brugge J.S. Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) is required for induction of autophagy during lumen formation in vitro. Proc. Natl. Acad. Sci. U.S.A. 101:2004;3438-3443
59. Mizushima N., Ohsumi Y., Yoshimori T. Autophagosome formation in mammalian cells. Cell Struct. Funct. 27:2002;421-429
60. Mizushima N., Yamamoto A., Matsui M., Yoshimori T., Ohsumi Y. In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker. Mol. Biol. Cell. 15:2004;1101-1111
61. Myohara M. Real-time observation of autophagic programmed cell death of Drosophila salivary glands in vitro. Dev. Genes Evol. 214:2004;99-104
62. Nixon R.A., Cataldo A.M., Mathews P.M. The endosomal-lysosomal system of neurons in Alzheimer's disease pathogenesis: A review. Neurochem. Res. 25:2000;1161-1172
63. Olie R.A., Durrieu F., Cornillon S., Loughran G., Gross J., Earnshaw W.C., et al. Apparent caspase independence of programmed cell death in Dictyostelium. Curr. Biol. 8:1998;955-958
64. Perfettini J.L., Kroemer G. Caspase activation is not death. Nat. Immunol. 4:2003;308-310
65. Qin Z.H., Wang Y., Kegel K.B., Kazantsev A., Apostol B.L., Thompson L.M., et al. Autophagy regulates the processing of amino terminal huntingtin fragments. Hum. Mol. Genet. 12:2003;3231-3244
66. Riddle D.L., Gorski S.M. Shaping and stretching life by autophagy. Dev. Cell. 5:2003;364-365
67. Scarlatti F., Bauvy C., Ventruti A., Sala G., Cluzeaud F., Vandewalle A., et al. Ceramide-mediated macroautophagy involves inhibition of protein kinase B and upregulation of Beclin 1. J. Biol. Chem. 279:2004;18384-18391
68. Schwartz L.M., Jones M.E.E., Kosz L., Kuah K. Selective repression of actin and myosin heavy chain expression during the programmed death of insect skeletal muscle. Dev. Biol. 158:1993;448-455
69. Schwartz L.M., Kosz L., Kay B.K. Gene activation is required for developmentally programmed cell death. Proc. Natl. Acad. Sci. U.S.A. 87:1990;6594-6598
70. Schwartz L.M., Myer A., Kosz L., Engelstein M., Maier C. Activation of polyubiquitin gene expression during developmentally programmed cell death. Neuron. 5:1990;411-419
71. Schweichel J.U., Merker H.J. The morphology of various types of cell death in prenatal tissues. Teratology. 7:1973;253-266
72. Terman A. The effect of age on formation and elimination of autophagic vacuoles in mouse hepatocytes. Gerontology. 41(Suppl. 2):1995;319-326
73. Terman A., Dalen H., Eaton J.W., Neuzil J., Brunk U.T. Mitochondrial recycling and aging of cardiac myocytes: The role of autophagocytosis. Exp. Gerontol. 38:2003;863-876
74. Tolkovsky, A. M., Bampton, E. T. W., & Goemans, C. G. (2004). Cell death in neuronal development and maintenance. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 175-200). New York: Wiley-Liss.
75. Tolkovsky A.M., Xue L., Fletcher G.C., Borutaite V. Mitochondrial disappearance from cells: A clue to the role of autophagy in programmed cell death and disease? Biochimie. 84:2002;233-240
76. Uchiyama Y. Autophagic cell death and its execution by lysosomal cathepsins. Arch. Histol. Cytol. 64:2001;233-246
77. Varshavsky A. The N-end rule and regulation of apoptosis. Nat. Cell Biol. 5:2003;373-376
78. Vaux D.L. Apoptosis timeline. Cell Death Differ. 9:2002;349-354
79. Wadewitz A.G., Lockshin R.A. Programmed cell death: Dying cells synthesize a co-ordinated, unique set of proteins in two different episodes of cell death. FEBS Lett. 241:1988;19-23
80. Wang C.W., Klionsky D.J. The molecular mechanism of autophagy. Mol. Med. 9:2003;65-76
81. Warner, H. R. (2004). Cell death, aging phenotypes and models of premature aging. In R. A. Lockshin & Z. Zakeri (Eds.), When cells die II (pp. 241-256). New York: Wiley-Liss.
82. Weeks J.C. Thinking globally, acting locally: Steroid hormone regulation of the dendritic architecture, synaptic connectivity and death of an individual neuron. Prog. Neurobiol. 70:2003;421-442
83. Weil M., Raff M.C., Braga V.M. Caspase activation in the terminal differentiation of human epidermal keratinocytes. Curr. Biol. 9:1999;361-364
84. Xue L., Fletcher G.C., Tolkovsky A.M. Autophagy is activated by apoptotic signalling in sympathetic neurons: An alternative mechanism of death execution. Mol. Cell Neurosci. 14:1999;180-198
85. Xue L., Fletcher G.C., Tolkovsky A.M. Mitochondria are selectively eliminated from eukaryotic cells after blockade of caspases during apoptosis. Curr. Biol. 11:2001;361-365
86. Yanagisawa H., Miyashita T., Nakano Y., Yamamoto D. HSpin1, a transmembrane protein interacting with Bcl-2/Bcl-xL, induces a caspase-independent autophagic cell death. Cell Death Differ. 10:2003;798-807
87. Yoshimori T. Autophagy: A regulated bulk degradation process inside cells. Biochem. Biophys. Res. Commun. 313:2004;453-458
88. Yuan J., Lipinski M., Degterev A. Diversity in the mechanisms of neuronal cell death. Neuron. 40:2003;401-413
89. Zakeri Z., Bursch W., Tenniswood M., Lockshin R.A. Cell death. Programmed, apoptosis, necrosis, or other. Cell Death Differ. 2:1995;87-96
90. Zhu J.H., Guo F., Shelburne J., Watkins S., Chu C.T. Localization of phosphorylated ERK/MAP kinases to mitochondria and autophagosomes in Lewy body diseases. Brain Pathol. 13:2003;473-481