-
1
-
-
0027965254
-
Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences
-
Adey NB, Schichman SA, Graham DK, Peterson SN, Edgell MH, Hutchison CA 3rd. 1994. Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences. Mol Biol Evol. 11:778-789.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 778-789
-
-
Adey, N.B.1
Schichman, S.A.2
Graham, D.K.3
Peterson, S.N.4
Edgell, M.H.5
Hutchison III, C.A.6
-
2
-
-
0035207819
-
Adaptive evolution in LINE-1 retrotransposons
-
Boissinot S, Furano AV. 2001. Adaptive evolution in LINE-1 retrotransposons. Mol Biol Evol. 18:2186-2194.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2186-2194
-
-
Boissinot, S.1
Furano, A.V.2
-
3
-
-
0032559061
-
Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
-
Cost GJ, Boeke JD. 1998. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry. 37:18081-18093.
-
(1998)
Biochemistry
, vol.37
, pp. 18081-18093
-
-
Cost, G.J.1
Boeke, J.D.2
-
4
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost GJ, Feng Q, Jacquier A, Boeke JD. 2002. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21:5899-5910.
-
(2002)
EMBO J
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
5
-
-
4344572683
-
Teleost fish genomes contain a diverse array of L1 retrotransposon lineages that exhibit a low copy number and high rate of turnover
-
Duvernell DD, Pryor SR, Adams SM. 2004. Teleost fish genomes contain a diverse array of L1 retrotransposon lineages that exhibit a low copy number and high rate of turnover. J Mol Evol. 59:298-308.
-
(2004)
J Mol Evol
, vol.59
, pp. 298-308
-
-
Duvernell, D.D.1
Pryor, S.R.2
Adams, S.M.3
-
6
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q, Moran JV, Kazazian HH Jr, Boeke JD. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell. 87:905-916.
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
7
-
-
0032478313
-
Retrotransposon R1Bm endonuclease cleaves the target sequence
-
Feng Q, Schumann G, Boeke JD. 1998. Retrotransposon R1Bm endonuclease cleaves the target sequence. Proc Natl Acad Sci USA. 95:2083-2088.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2083-2088
-
-
Feng, Q.1
Schumann, G.2
Boeke, J.D.3
-
8
-
-
0033631415
-
The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
-
Furano AV. 2000. The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons. Prog Nucleic Acid Res Mol Biol. 64:255-294.
-
(2000)
Prog Nucleic Acid Res Mol Biol
, vol.64
, pp. 255-294
-
-
Furano, A.V.1
-
9
-
-
0348048755
-
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
-
Furano AV, Duvernell DD, Boissinot S. 2004. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet. 20:9-14.
-
(2004)
Trends Genet
, vol.20
, pp. 9-14
-
-
Furano, A.V.1
Duvernell, D.D.2
Boissinot, S.3
-
10
-
-
34248512741
-
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
-
Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J. 2007. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res. 17:992-1004.
-
(2007)
Genome Res
, vol.17
, pp. 992-1004
-
-
Gentles, A.J.1
Wakefield, M.J.2
Kohany, O.3
Gu, W.4
Batzer, M.A.5
Pollock, D.D.6
Jurka, J.7
-
11
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
230 co-authors
-
Gibbs RA, Weinstock GM, Metzker ML, et al. (230 co-authors). 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428:493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
-
12
-
-
23844510228
-
Multiple fates of L1 retrotransposition intermediates in cultured human cells
-
Gilbert N, Lutz S, Morrish TA, Moran JV. 2005. Multiple fates of L1 retrotransposition intermediates in cultured human cells. Mol Cell Biol. 25:7780-7795.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 7780-7795
-
-
Gilbert, N.1
Lutz, S.2
Morrish, T.A.3
Moran, J.V.4
-
13
-
-
0037047355
-
Genomic deletions created upon LINE-1 retrotransposition
-
Gilbert N, Lutz-Prigge S, Moran JV. 2002. Genomic deletions created upon LINE-1 retrotransposition. Cell. 110:315-325.
-
(2002)
Cell
, vol.110
, pp. 315-325
-
-
Gilbert, N.1
Lutz-Prigge, S.2
Moran, J.V.3
-
14
-
-
33644874573
-
The UCSC genome browser database: Update 2006
-
27 co-authors
-
Hinrichs AS, Karolchik D, Baertsch R, et al. (27 co-authors). 2006. The UCSC genome browser database: update 2006. Nucleic Acids Res. 34:D590-D598.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
-
15
-
-
0030042251
-
Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
-
Hohjoh H, Singer MF. 1996. Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J. 15:630-639.
-
(1996)
EMBO J
, vol.15
, pp. 630-639
-
-
Hohjoh, H.1
Singer, M.F.2
-
16
-
-
33846021959
-
Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts
-
Ichiyanagi K, Nakajima R, Kajikawa M, Okada N. 2007. Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts. Genome Res. 17:33-41.
-
(2007)
Genome Res
, vol.17
, pp. 33-41
-
-
Ichiyanagi, K.1
Nakajima, R.2
Kajikawa, M.3
Okada, N.4
-
17
-
-
33750069168
-
Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method
-
Ichiyanagi K, Okada N. 2006. Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method. Gene. 383:108-116.
-
(2006)
Gene
, vol.383
, pp. 108-116
-
-
Ichiyanagi, K.1
Okada, N.2
-
18
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
19
-
-
30044433182
-
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
-
Khan H, Smit A, Boissinot S. 2006. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res. 16:78-87.
-
(2006)
Genome Res
, vol.16
, pp. 78-87
-
-
Khan, H.1
Smit, A.2
Boissinot, S.3
-
20
-
-
0030961149
-
In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition
-
Kolosha VO, Martin SL. 1997. In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition. Proc Natl Acad Sci USA. 94:10155-10160.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10155-10160
-
-
Kolosha, V.O.1
Martin, S.L.2
-
21
-
-
33745864020
-
Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles
-
Kulpa DA, Moran JV. 2006. Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles. Nat Struct Mol Biol. 13:655-666.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 655-666
-
-
Kulpa, D.A.1
Moran, J.V.2
-
22
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
23
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
255 co-authors
-
Lander ES, Linton LM, Birren B, et al. (255 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
24
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
236 coauthors
-
Lindblad-Toh K, Wade CM, Mikkelsen TS, et al. (236 coauthors). 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438:803-819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
-
25
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell. 72:595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
26
-
-
0035812654
-
Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: A comparative analysis of T-A and A-T steps within A-tracts
-
Mack DR, Chiu TK, Dickerson RE. 2001. Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts. J Mol Biol. 312:1037-1049.
-
(2001)
J Mol Biol
, vol.312
, pp. 1037-1049
-
-
Mack, D.R.1
Chiu, T.K.2
Dickerson, R.E.3
-
27
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik HS, Burke WD, Eickbush TH. 1999. The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol. 16:793-805.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
28
-
-
0035163939
-
Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
-
Martin SL, Bushman FD. 2001. Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol Cell Biol. 21:467-475.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 467-475
-
-
Martin, S.L.1
Bushman, F.D.2
-
29
-
-
17144423310
-
LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein
-
Martin SL, Cruceanu M, Branciforte D, Wai-Lun Li P, Kwok SC, Hodges RS, Williams MC. 2005. LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein. J Mol Biol. 348:549-561.
-
(2005)
J Mol Biol
, vol.348
, pp. 549-561
-
-
Martin, S.L.1
Cruceanu, M.2
Branciforte, D.3
Wai-Lun Li, P.4
Kwok, S.C.5
Hodges, R.S.6
Williams, M.C.7
-
30
-
-
0022005269
-
Tempo and mode of concerted evolution in the L1 repeat family of mice
-
Martin SL, Voliva CF, Hardies SC, Edgell MH, Hutchison CA 3rd. 1985. Tempo and mode of concerted evolution in the L1 repeat family of mice. Mol Biol Evol. 2:127-140.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 127-140
-
-
Martin, S.L.1
Voliva, C.F.2
Hardies, S.C.3
Edgell, M.H.4
Hutchison III, C.A.5
-
31
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
67 co-authors
-
Mikkelsen TS, Hillier LW, Eichler EE, et al. (67 co-authors). 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature. 437:69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
Mikkelsen, T.S.1
Hillier, L.W.2
Eichler, E.E.3
-
32
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
235 co-authors
-
Mikkelsen TS, Wakefield MJ, Aken B, et al. (235 co-authors). 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447:167-177.
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
-
33
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran JV, Holmes SE, Naas TP, DeBerardinis RJ, Boeke JD, Kazazian HH Jr. 1996. High frequency retrotransposition in cultured mammalian cells. Cell. 87:917-927.
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
34
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish TA, Gilbert N, Myers JS, Vincent BJ, Stamato TD, Taccioli GE, Batzer MA, Moran JV. 2002. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat Genet. 31:159-165.
-
(2002)
Nat Genet
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
Gilbert, N.2
Myers, J.S.3
Vincent, B.J.4
Stamato, T.D.5
Taccioli, G.E.6
Batzer, M.A.7
Moran, J.V.8
-
35
-
-
0035208118
-
Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
-
Ostertag EM, Kazazian HH Jr. 2001. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res. 11:2059-2065.
-
(2001)
Genome Res
, vol.11
, pp. 2059-2065
-
-
Ostertag, E.M.1
Kazazian Jr., H.H.2
-
37
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
Smit AF, Toth G, Riggs AD, Jurka J. 1995. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol. 246:401-417.
-
(1995)
J Mol Biol
, vol.246
, pp. 401-417
-
-
Smit, A.F.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
38
-
-
0842299592
-
DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum
-
Stefl R, Wu H, Ravindranathan S, Sklenar V, Feigon J. 2004. DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum. Proc Natl Acad Sci USA. 101:1177-1182.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1177-1182
-
-
Stefl, R.1
Wu, H.2
Ravindranathan, S.3
Sklenar, V.4
Feigon, J.5
-
39
-
-
0037047396
-
Human L1 retrotransposition is associated with genetic instability in vivo
-
Symer DE, Connelly C, Szak ST, Caputo EM, Cost GJ, Parmigiani G, Boeke JD. 2002. Human L1 retrotransposition is associated with genetic instability in vivo. Cell. 110:327-338.
-
(2002)
Cell
, vol.110
, pp. 327-338
-
-
Symer, D.E.1
Connelly, C.2
Szak, S.T.3
Caputo, E.M.4
Cost, G.J.5
Parmigiani, G.6
Boeke, J.D.7
-
40
-
-
0036470563
-
Transplantation of target site specificity by swapping the endonuclease domains of two LINEs
-
Takahashi H, Fujiwara H. 2002. Transplantation of target site specificity by swapping the endonuclease domains of two LINEs. EMBO J. 21:408-417.
-
(2002)
EMBO J
, vol.21
, pp. 408-417
-
-
Takahashi, H.1
Fujiwara, H.2
-
41
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
42
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
222 coauthors
-
Waterston RH, Lindblad-Toh K, Birney E, et al. (222 coauthors). 2002. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
-
43
-
-
2942531259
-
Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon
-
Weichenrieder O, Repanas K, Perrakis A. 2004. Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon. Structure. 12:975-986.
-
(2004)
Structure
, vol.12
, pp. 975-986
-
-
Weichenrieder, O.1
Repanas, K.2
Perrakis, A.3
-
44
-
-
23844508118
-
APE-type non-LTR retrotransposons: Determinants involved in target site recognition
-
Zingler N, Weichenrieder O, Schumann GG. 2005. APE-type non-LTR retrotransposons: determinants involved in target site recognition. Cytogenet Genome Res. 110:250-268.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 250-268
-
-
Zingler, N.1
Weichenrieder, O.2
Schumann, G.G.3
|