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Volumn , Issue , 2006, Pages 127-148

Introduction to computational models of biochemical reaction networks

Author keywords

[No Author keywords available]

Indexed keywords

KINETIC PARAMETERS; KINETIC THEORY; SIGNAL TRANSDUCTION;

EID: 37149024276     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-012088786-6/50026-5     Document Type: Chapter
Times cited : (6)

References (122)
  • 1
    • 0024597907 scopus 로고
    • Control analysis of time-dependent metabolic systems
    • Acerenza L., Sauro H.M., Kacser H. Control analysis of time-dependent metabolic systems. J. Theo. Biol. 1989, 137(4):423-444.
    • (1989) J. Theo. Biol. , vol.137 , Issue.4 , pp. 423-444
    • Acerenza, L.1    Sauro, H.M.2    Kacser, H.3
  • 2
    • 0033573156 scopus 로고    scopus 로고
    • Internal regulation of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes
    • Ainscow E.K., Brand M.D. Internal regulation of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes. Eur. J. Biochem. 1999, 266(3):737-749.
    • (1999) Eur. J. Biochem. , vol.266 , Issue.3 , pp. 737-749
    • Ainscow, E.K.1    Brand, M.D.2
  • 3
    • 0033179481 scopus 로고    scopus 로고
    • Top-down control analysis of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes
    • Ainscow E.K., Brand M.D. Top-down control analysis of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes. Eur. J. Biochem. 1999, 263(3):671-685.
    • (1999) Eur. J. Biochem. , vol.263 , Issue.3 , pp. 671-685
    • Ainscow, E.K.1    Brand, M.D.2
  • 4
    • 0037383238 scopus 로고    scopus 로고
    • Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: Differences in molecular structure and physiological function
    • Alves R., Savageau M.A. Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: Differences in molecular structure and physiological function. Mol. Microbiol. 2003, 48(1):25-51.
    • (2003) Mol. Microbiol. , vol.48 , Issue.1 , pp. 25-51
    • Alves, R.1    Savageau, M.A.2
  • 5
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
    • Arkin A., Ross J., McAdams H.H. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 1998, 149(4):1633-1648.
    • (1998) Genetics , vol.149 , Issue.4 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 6
    • 0031021873 scopus 로고    scopus 로고
    • Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes
    • Bakker B.M., Michels P.A.M., Opperdoes F.R., Westerhoff H.V. Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes. J. Biol. Chem. 1997, 272(6):3207-3215.
    • (1997) J. Biol. Chem. , vol.272 , Issue.6 , pp. 3207-3215
    • Bakker, B.M.1    Michels, P.A.M.2    Opperdoes, F.R.3    Westerhoff, H.V.4
  • 7
    • 0033977087 scopus 로고    scopus 로고
    • Metabolic control analysis of glycolysis in trypanosomes as an approach to improve selectivity and effectiveness of drugs
    • Bakker B.M., Westerhoff H.V., Opperdoes F.R., Michels P.A. Metabolic control analysis of glycolysis in trypanosomes as an approach to improve selectivity and effectiveness of drugs. Mol. Biochem. Parasitol. 2000, 106(1):1-10.
    • (2000) Mol. Biochem. Parasitol. , vol.106 , Issue.1 , pp. 1-10
    • Bakker, B.M.1    Westerhoff, H.V.2    Opperdoes, F.R.3    Michels, P.A.4
  • 8
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi A.L., Oltvai Z.N. Network biology: Understanding the cell's functional organization. Nat. Rev. Genet. 2004, 5(2):101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 9
    • 0030381125 scopus 로고    scopus 로고
    • Reaction-diffusion master equation: A comparison with microscopic simulations
    • Baras F., Mansour M.M. Reaction-diffusion master equation: A comparison with microscopic simulations. Physical Review 1996, 54(6):6139-6148.
    • (1996) Physical Review , vol.54 , Issue.6 , pp. 6139-6148
    • Baras, F.1    Mansour, M.M.2
  • 10
    • 21244472631 scopus 로고    scopus 로고
    • Emergence and its place in Nature: A case study of biochemical networks
    • Boogerd F.C., Bruggeman F.J., Richardson R., Stephan S. Emergence and its place in Nature: A case study of biochemical networks. Synthese 2005, 145(1):131-164.
    • (2005) Synthese , vol.145 , Issue.1 , pp. 131-164
    • Boogerd, F.C.1    Bruggeman, F.J.2    Richardson, R.3    Stephan, S.4
  • 11
    • 0037085584 scopus 로고    scopus 로고
    • Metabolic profiling of cell growth and death in cancer: applications in drug discovery
    • Boros L.G., Cascante M., Lee W.N. Metabolic profiling of cell growth and death in cancer: applications in drug discovery. Drug Discov. Today 2002, 7(6):364-372.
    • (2002) Drug Discov. Today , vol.7 , Issue.6 , pp. 364-372
    • Boros, L.G.1    Cascante, M.2    Lee, W.N.3
  • 12
    • 0032864252 scopus 로고    scopus 로고
    • Spatial gradients of cellular phospho-proteins
    • Brown G.C., Kholodenko B.N. Spatial gradients of cellular phospho-proteins. FEBS Lett. 1999, 457(3):452-454.
    • (1999) FEBS Lett. , vol.457 , Issue.3 , pp. 452-454
    • Brown, G.C.1    Kholodenko, B.N.2
  • 14
    • 17444406291 scopus 로고    scopus 로고
    • The multifarious short-term regulation of ammonium assimilation of Escherichia coli: dissection using an in silico replica
    • Bruggeman F.J., Boogerd F.C., Westerhoff H.V. The multifarious short-term regulation of ammonium assimilation of Escherichia coli: dissection using an in silico replica. Febs J 2005, 272(8):1965-1985.
    • (2005) Febs J , vol.272 , Issue.8 , pp. 1965-1985
    • Bruggeman, F.J.1    Boogerd, F.C.2    Westerhoff, H.V.3
  • 15
    • 0003381877 scopus 로고
    • Metabolic control mechanisms: A solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells
    • Chance B., Garfinkel D., Higgins J., Hess B. Metabolic control mechanisms: A solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells. J. Biol. Chem. 1960, 235:2426-2439.
    • (1960) J. Biol. Chem. , vol.235 , pp. 2426-2439
    • Chance, B.1    Garfinkel, D.2    Higgins, J.3    Hess, B.4
  • 16
    • 0036304317 scopus 로고    scopus 로고
    • The role of stoichiometric analysis in studies of metabolism: An example
    • Cornish-Bowden A., Hofmeyr J.H. The role of stoichiometric analysis in studies of metabolism: An example. J. Theo. Biol. 2002, 216(2):179-191.
    • (2002) J. Theo. Biol. , vol.216 , Issue.2 , pp. 179-191
    • Cornish-Bowden, A.1    Hofmeyr, J.H.2
  • 17
    • 3142617691 scopus 로고    scopus 로고
    • Mathematical and computational techniques to deduce complex biochemical reaction mechanisms
    • Crampin E.J., Schnell S., McSharry P.E. Mathematical and computational techniques to deduce complex biochemical reaction mechanisms. Prog Biophys Mol Biol 2004, 86(1):77-112.
    • (2004) Prog Biophys Mol Biol , vol.86 , Issue.1 , pp. 77-112
    • Crampin, E.J.1    Schnell, S.2    McSharry, P.E.3
  • 18
    • 0036683181 scopus 로고    scopus 로고
    • Linking the genes: Inferring quantitative gene networks from microarray data
    • de la Fuente A., Brazhnik P., Mendes P. Linking the genes: Inferring quantitative gene networks from microarray data. Trends Genet. 2002, 18(8):395-398.
    • (2002) Trends Genet. , vol.18 , Issue.8 , pp. 395-398
    • de la Fuente, A.1    Brazhnik, P.2    Mendes, P.3
  • 19
    • 0029023952 scopus 로고
    • Control of metabolic pathways by time-scale separation
    • Delgado J., Liao J.C. Control of metabolic pathways by time-scale separation. Biosystems 1995, 36(1):55-70.
    • (1995) Biosystems , vol.36 , Issue.1 , pp. 55-70
    • Delgado, J.1    Liao, J.C.2
  • 20
    • 2942579562 scopus 로고    scopus 로고
    • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions
    • Edwards J.S., Palsson B.O. Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions. BMC Bioinformatics 2000, 1(1):1.
    • (2000) BMC Bioinformatics , vol.1 , Issue.1 , pp. 1
    • Edwards, J.S.1    Palsson, B.O.2
  • 21
    • 0242490781 scopus 로고    scopus 로고
    • Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
    • Elf J., Ehrenberg M. Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. Genome Research 2003, 13(11):2475-2484.
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2475-2484
    • Elf, J.1    Ehrenberg, M.2
  • 22
    • 84882319849 scopus 로고    scopus 로고
    • Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases
    • (Accepted for publication in Issue 2)
    • Elf J., Ehrenberg M. Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases. Systems Biology 2005, (Accepted for publication in Issue 2).
    • (2005) Systems Biology
    • Elf, J.1    Ehrenberg, M.2
  • 23
    • 12244269687 scopus 로고    scopus 로고
    • Near-critical phenomena in intracellular metabolite pools
    • Elf J., Paulsson J., Berg O.G., Ehrenberg M. Near-critical phenomena in intracellular metabolite pools. Biophysical Journal 2003, 84(1):154-170.
    • (2003) Biophysical Journal , vol.84 , Issue.1 , pp. 154-170
    • Elf, J.1    Paulsson, J.2    Berg, O.G.3    Ehrenberg, M.4
  • 24
    • 0035478585 scopus 로고    scopus 로고
    • Macromolecular crowding: Obvious but underappreciated
    • Ellis R.J. Macromolecular crowding: Obvious but underappreciated. Trends in Biochemical Sciences 2001, 26(10):597-604.
    • (2001) Trends in Biochemical Sciences , vol.26 , Issue.10 , pp. 597-604
    • Ellis, R.J.1
  • 25
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403(6767):335-338.
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 28
    • 0037313750 scopus 로고    scopus 로고
    • Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
    • Forster J., Famili I., Fu P., Palsson B.O., Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Research 2003, 13(2):244-253.
    • (2003) Genome Research , vol.13 , Issue.2 , pp. 244-253
    • Forster, J.1    Famili, I.2    Fu, P.3    Palsson, B.O.4    Nielsen, J.5
  • 29
    • 0024287936 scopus 로고
    • Control analysis of metabolic networks: Homogeneous functions and the summation theorems for control coefficients
    • Giersch C. Control analysis of metabolic networks: Homogeneous functions and the summation theorems for control coefficients. Eur. J. Biochem. 1988, 174(3):509-513.
    • (1988) Eur. J. Biochem. , vol.174 , Issue.3 , pp. 509-513
    • Giersch, C.1
  • 30
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie D.T. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 1976, 22:403-434.
    • (1976) Journal of Computational Physics , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 33
    • 0015419716 scopus 로고
    • Dissipative structures for an allosteric model-Application to glycolytic oscillations
    • Goldbeter A., Lefever R. Dissipative structures for an allosteric model-Application to glycolytic oscillations. Biophysical Journal 1972, 12(10):1302-1315.
    • (1972) Biophysical Journal , vol.12 , Issue.10 , pp. 1302-1315
    • Goldbeter, A.1    Lefever, R.2
  • 34
    • 0025869880 scopus 로고
    • Inside a living cell
    • Goodsell D.S. Inside a living cell. Trends Biochem. Sci. 1991, 16(6):203-206.
    • (1991) Trends Biochem. Sci. , vol.16 , Issue.6 , pp. 203-206
    • Goodsell, D.S.1
  • 35
    • 0000607712 scopus 로고    scopus 로고
    • Master equation and molecular dynamics simulations of spatiotemporal effects in a bistable chemical system
    • Gorecki J., Kawczynski A.L., Nowakowski B. Master equation and molecular dynamics simulations of spatiotemporal effects in a bistable chemical system. Journal of Physical Chemistry 1999, 103:3200-3209.
    • (1999) Journal of Physical Chemistry , vol.103 , pp. 3200-3209
    • Gorecki, J.1    Kawczynski, A.L.2    Nowakowski, B.3
  • 36
    • 0020490497 scopus 로고
    • Quantification of the contribution of various steps to the control of mitochondrial respiration
    • Groen A.K., Wanders R.J., Westerhoff H.V., van der Meer R., Tager J.M. Quantification of the contribution of various steps to the control of mitochondrial respiration. J. Biol. Chem. 1982, 257(6):2754-2757.
    • (1982) J. Biol. Chem. , vol.257 , Issue.6 , pp. 2754-2757
    • Groen, A.K.1    Wanders, R.J.2    Westerhoff, H.V.3    van der Meer, R.4    Tager, J.M.5
  • 38
    • 0015989446 scopus 로고
    • A linear steady-state treatment of enzymatic chains. General properties, control and effector strength
    • Heinrich R., Rapoport T.A. A linear steady-state treatment of enzymatic chains. General properties, control and effector strength. Eur. J. Biochem. 1974, 42(1):89-95.
    • (1974) Eur. J. Biochem. , vol.42 , Issue.1 , pp. 89-95
    • Heinrich, R.1    Rapoport, T.A.2
  • 39
    • 0025885261 scopus 로고
    • Metabolic control analysis of relaxation processes
    • Heinrich R., Reder C. Metabolic control analysis of relaxation processes. J. Theo. Biol. 1991, 151:57-61.
    • (1991) J. Theo. Biol. , vol.151 , pp. 57-61
    • Heinrich, R.1    Reder, C.2
  • 41
    • 0015825098 scopus 로고
    • Organization of glycolysis: Oscillatory and stationary control
    • Hess B. Organization of glycolysis: Oscillatory and stationary control. Symp. Soc. Exp. Biol. 1973, 27:105-131.
    • (1973) Symp. Soc. Exp. Biol. , vol.27 , pp. 105-131
    • Hess, B.1
  • 43
    • 0024789683 scopus 로고
    • Control-pattern analysis of metabolic pathways: Flux and concentration control in linear pathways
    • Hofmeyr J.H.S. Control-pattern analysis of metabolic pathways: Flux and concentration control in linear pathways. Eur. J. Biochem. 1989, 186(1-2):343-354.
    • (1989) Eur. J. Biochem. , vol.186 , Issue.1-2 , pp. 343-354
    • Hofmeyr, J.H.S.1
  • 45
    • 0035819506 scopus 로고    scopus 로고
    • Building the cellular puzzle: Control in multilevel reaction networks
    • Hofmeyr J.H.S., Westerhoff H.V. Building the cellular puzzle: Control in multilevel reaction networks. J. Theo. Biol. 2001, 208(3):261-285.
    • (2001) J. Theo. Biol. , vol.208 , Issue.3 , pp. 261-285
    • Hofmeyr, J.H.S.1    Westerhoff, H.V.2
  • 48
    • 0035846723 scopus 로고    scopus 로고
    • Full-scale model of glycolysis in Saccharomyces cerevisiae
    • Hynne R., Dano S., Sorensen P.G. Full-scale model of glycolysis in Saccharomyces cerevisiae. Biophysical Chemistry 2001, 94(1-2):121-163.
    • (2001) Biophysical Chemistry , vol.94 , Issue.1-2 , pp. 121-163
    • Hynne, R.1    Dano, S.2    Sorensen, P.G.3
  • 49
    • 33645642280 scopus 로고    scopus 로고
    • Autonomously oscillating biochemical systems: parametric sensitivity of extrema and period
    • Ingalls B. Autonomously oscillating biochemical systems: parametric sensitivity of extrema and period. Systems Biology 2004, 1:62-70.
    • (2004) Systems Biology , vol.1 , pp. 62-70
    • Ingalls, B.1
  • 50
    • 0742304058 scopus 로고    scopus 로고
    • A frequency domain approach to sensitivity analysis of biochemical networks
    • Ingalls B. A frequency domain approach to sensitivity analysis of biochemical networks. Journal of Physical Chemistry 2004, 108:1143-1152.
    • (2004) Journal of Physical Chemistry , vol.108 , pp. 1143-1152
    • Ingalls, B.1
  • 51
    • 0037466509 scopus 로고    scopus 로고
    • Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories
    • Ingalls B.P., Sauro H.M. Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories. Journal of Theoretical Biology 2003, 222(1):23-36.
    • (2003) Journal of Theoretical Biology , vol.222 , Issue.1 , pp. 23-36
    • Ingalls, B.P.1    Sauro, H.M.2
  • 53
    • 0037908691 scopus 로고    scopus 로고
    • Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis
    • Isermann N., Wiechert W. Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis. Math Biosci. 2003, 183(2):175-214.
    • (2003) Math Biosci. , vol.183 , Issue.2 , pp. 175-214
    • Isermann, N.1    Wiechert, W.2
  • 54
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • Jeong H., Tombor B., Albert R., Oltvai Z.N., Barabasi A.L. The large-scale organization of metabolic networks. Nature 2000, 407(6804):651-654.
    • (2000) Nature , vol.407 , Issue.6804 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 56
    • 0026000298 scopus 로고
    • Control theory of regulatory cascades
    • Kahn D., Westerhoff H.V. Control theory of regulatory cascades. J. Theo. Biol. 1991, 153(2):255-285.
    • (1991) J. Theo. Biol. , vol.153 , Issue.2 , pp. 255-285
    • Kahn, D.1    Westerhoff, H.V.2
  • 58
    • 0000944264 scopus 로고
    • Metabolic control theory: Its role in microbiology and biotechnology
    • Kell D.B., Westerhoff H.V. Metabolic control theory: Its role in microbiology and biotechnology. FEMS Microbiol. Rev. 1986, 39:305-320.
    • (1986) FEMS Microbiol. Rev. , vol.39 , pp. 305-320
    • Kell, D.B.1    Westerhoff, H.V.2
  • 61
    • 0028898474 scopus 로고
    • Control in channeled pathways: A matrix method calculating the enzyme control coefficients
    • Kholodenko B.N., Westerhoff H.V., Puigjaner J., Cascante M. Control in channeled pathways: A matrix method calculating the enzyme control coefficients. Biophysical Chemistry 1995, 53(3):247-258.
    • (1995) Biophysical Chemistry , vol.53 , Issue.3 , pp. 247-258
    • Kholodenko, B.N.1    Westerhoff, H.V.2    Puigjaner, J.3    Cascante, M.4
  • 62
    • 4243082278 scopus 로고    scopus 로고
    • The metabolic control theory of biochemical oscillating systems: Definitions of the quantitative characteristics and their simplest properties
    • Kholodenko B.N., Demin O.V., Westerhoff H.V. The metabolic control theory of biochemical oscillating systems: Definitions of the quantitative characteristics and their simplest properties. Biochemistry-Moscow 1996, 61(4):423-434.
    • (1996) Biochemistry-Moscow , vol.61 , Issue.4 , pp. 423-434
    • Kholodenko, B.N.1    Demin, O.V.2    Westerhoff, H.V.3
  • 64
    • 0031559933 scopus 로고    scopus 로고
    • Quantification of information transfer via cellular signal transduction pathways
    • Kholodenko B.N., Hoek J.B., Westerhoff H.V., Brown G.C. Quantification of information transfer via cellular signal transduction pathways. FEBS Lett. 1997, 414(2):430-434.
    • (1997) FEBS Lett. , vol.414 , Issue.2 , pp. 430-434
    • Kholodenko, B.N.1    Hoek, J.B.2    Westerhoff, H.V.3    Brown, G.C.4
  • 67
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano H. Computational systems biology. Nature 2002, 420(6912):206-210.
    • (2002) Nature , vol.420 , Issue.6912 , pp. 206-210
    • Kitano, H.1
  • 68
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • Kitano H. Biological robustness. Nat. Rev. Genet. 2004, 5(11):826-837.
    • (2004) Nat. Rev. Genet. , vol.5 , Issue.11 , pp. 826-837
    • Kitano, H.1
  • 69
    • 0013863816 scopus 로고
    • Comparison of experimental binding data and theoretical models in proteins containing subunits
    • Koshland D.E., Nemethy G., Filmer D. Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 1966, 5(1):365-385.
    • (1966) Biochemistry , vol.5 , Issue.1 , pp. 365-385
    • Koshland, D.E.1    Nemethy, G.2    Filmer, D.3
  • 72
    • 0014030724 scopus 로고
    • From enzymatic adaptation to allosteric transitions
    • Monod J. From enzymatic adaptation to allosteric transitions. Science 1966, 154(748):475-483.
    • (1966) Science , vol.154 , Issue.748 , pp. 475-483
    • Monod, J.1
  • 73
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: A plausible model
    • Monod J., Wyman J., Changeux J.P. On the nature of allosteric transitions: A plausible model. J. Mol. Biol. 1965, 12:88-118.
    • (1965) J. Mol. Biol. , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.P.3
  • 74
    • 0030820281 scopus 로고    scopus 로고
    • Small-scale lipid-membrane structure: Simulation versus experiment
    • Mouritsen O.G., Jorgensen K. Small-scale lipid-membrane structure: Simulation versus experiment. Curr. Opin. Struct. Biol. 1997, 7(4):518-527.
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , Issue.4 , pp. 518-527
    • Mouritsen, O.G.1    Jorgensen, K.2
  • 75
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • Newman M.E.J. The structure and function of complex networks. SIAM Review 2003, 45:167-256.
    • (2003) SIAM Review , vol.45 , pp. 167-256
    • Newman, M.E.J.1
  • 79
    • 0001738507 scopus 로고
    • Control of pyrimidine biosynthesis in Escherichia coli by a feed-back mechanism
    • Pardee A.B., Yates R.A. Control of pyrimidine biosynthesis in Escherichia coli by a feed-back mechanism. J. Biol. Chem. 1956, 221(2):757-770.
    • (1956) J. Biol. Chem. , vol.221 , Issue.2 , pp. 757-770
    • Pardee, A.B.1    Yates, R.A.2
  • 80
    • 0242690927 scopus 로고    scopus 로고
    • Control of spatially heterogeneous and time-varying cellular reaction networks: A new summation law
    • Peletier M.A., Westerhoff H.V., Kholodenko B.N. Control of spatially heterogeneous and time-varying cellular reaction networks: A new summation law. Journal of Theoretical Biology 2003, 225(4):477-487.
    • (2003) Journal of Theoretical Biology , vol.225 , Issue.4 , pp. 477-487
    • Peletier, M.A.1    Westerhoff, H.V.2    Kholodenko, B.N.3
  • 82
    • 0023709196 scopus 로고
    • Metabolic control theory: a structural approach
    • Reder C. Metabolic control theory: a structural approach. J. Theo. Biol. 1988, 135(2):175-201.
    • (1988) J. Theo. Biol. , vol.135 , Issue.2 , pp. 175-201
    • Reder, C.1
  • 84
    • 9744248681 scopus 로고    scopus 로고
    • Yeast glycolytic oscillations that are not controlled by a single oscillophore: A new definition of oscillophore strength
    • Reijenga K.A., van Megen Y.M., Kooi B.W., Bakker B.M., Snoep J.L., van Verseveld H.W., Westerhoff H.V. Yeast glycolytic oscillations that are not controlled by a single oscillophore: A new definition of oscillophore strength. J. Theo. Biol. 2005, 232(3):385-398.
    • (2005) J. Theo. Biol. , vol.232 , Issue.3 , pp. 385-398
    • Reijenga, K.A.1    van Megen, Y.M.2    Kooi, B.W.3    Bakker, B.M.4    Snoep, J.L.5    van Verseveld, H.W.6    Westerhoff, H.V.7
  • 85
    • 0036216077 scopus 로고    scopus 로고
    • Control analysis for autonomously oscillating biochemical networks
    • 1/1
    • Reijenga K.A., Westerhoff H.V., Kholodenko B.N., Snoep J.L. Control analysis for autonomously oscillating biochemical networks. Biophys. J. 2002, 82(1/1):99-108.
    • (2002) Biophys. J. , vol.82 , pp. 99-108
    • Reijenga, K.A.1    Westerhoff, H.V.2    Kholodenko, B.N.3    Snoep, J.L.4
  • 86
    • 0034634571 scopus 로고    scopus 로고
    • Understanding glucose transport by the bacterial phosphoenolpyruvate: Glycose phosphotransferase system on the basis of kinetic measurements in vitro
    • Rohwer J.M., Meadow N.D., Roseman S., Westerhoff H.V., Postma P.W. Understanding glucose transport by the bacterial phosphoenolpyruvate: Glycose phosphotransferase system on the basis of kinetic measurements in vitro. J. Biol. Chem. 2000, 275(45):34909-34921.
    • (2000) J. Biol. Chem. , vol.275 , Issue.45 , pp. 34909-34921
    • Rohwer, J.M.1    Meadow, N.D.2    Roseman, S.3    Westerhoff, H.V.4    Postma, P.W.5
  • 87
    • 0004237770 scopus 로고    scopus 로고
    • John Wiley and Sons, Chichester, A. Saltelli, K. Chan, E.M. Scott (Eds.)
    • Sensitivity analysis 2000, John Wiley and Sons, Chichester. A. Saltelli, K. Chan, E.M. Scott (Eds.).
    • (2000) Sensitivity analysis
  • 89
    • 0025800424 scopus 로고
    • Metabolite channeling: Implications for regulation of metabolism and for quantitative description of reactions in vivo
    • Savageau M.A. Metabolite channeling: Implications for regulation of metabolism and for quantitative description of reactions in vivo. J. Theo. Biol. 1991, 152(1):85-92.
    • (1991) J. Theo. Biol. , vol.152 , Issue.1 , pp. 85-92
    • Savageau, M.A.1
  • 90
    • 0035578429 scopus 로고    scopus 로고
    • Design principles for elementary gene circuits: Elements, methods, and examples
    • Savageau M.A. Design principles for elementary gene circuits: Elements, methods, and examples. Chaos 2001, 11(1):142-159.
    • (2001) Chaos , vol.11 , Issue.1 , pp. 142-159
    • Savageau, M.A.1
  • 91
    • 0034447725 scopus 로고    scopus 로고
    • Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
    • Schilling C.H., Edwards J.S., Letscher D., Palsson B.O. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnol. Bioeng. 2000, 71(4):286-306.
    • (2000) Biotechnol. Bioeng. , vol.71 , Issue.4 , pp. 286-306
    • Schilling, C.H.1    Edwards, J.S.2    Letscher, D.3    Palsson, B.O.4
  • 92
    • 0034615791 scopus 로고    scopus 로고
    • Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
    • Schilling C.H., Letscher D., Palsson B.O. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theo. Biol. 2000, 203(3):229-248.
    • (2000) J. Theo. Biol. , vol.203 , Issue.3 , pp. 229-248
    • Schilling, C.H.1    Letscher, D.2    Palsson, B.O.3
  • 93
    • 0030574066 scopus 로고    scopus 로고
    • Control analysis in terms of generalized variables characterizing metabolic systems
    • Schuster S. Control analysis in terms of generalized variables characterizing metabolic systems. Journal of Theoretical Biology 1996, 182(3):259-268.
    • (1996) Journal of Theoretical Biology , vol.182 , Issue.3 , pp. 259-268
    • Schuster, S.1
  • 94
    • 0001062859 scopus 로고
    • Decomposition of biochemical reaction systems according to flux control insusceptibility
    • Schuster S., Schuster R. Decomposition of biochemical reaction systems according to flux control insusceptibility. Journal De Chimie Physique Et De Physico-Chimie Biologique 1992, 89(9):1887-1910.
    • (1992) Journal De Chimie Physique Et De Physico-Chimie Biologique , vol.89 , Issue.9 , pp. 1887-1910
    • Schuster, S.1    Schuster, R.2
  • 95
    • 0027486853 scopus 로고
    • Modular analysis of the control of complex metabolic pathways
    • Schuster S., Kahn D., Westerhoff H.V. Modular analysis of the control of complex metabolic pathways. Biophys. Chem. 1993, 48(1):1-17.
    • (1993) Biophys. Chem. , vol.48 , Issue.1 , pp. 1-17
    • Schuster, S.1    Kahn, D.2    Westerhoff, H.V.3
  • 96
    • 0033080396 scopus 로고    scopus 로고
    • Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
    • Schuster S., Dandekar T., Fell D.A. Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering. Trends in Biotechnology 1999, 17(2):53-60.
    • (1999) Trends in Biotechnology , vol.17 , Issue.2 , pp. 53-60
    • Schuster, S.1    Dandekar, T.2    Fell, D.A.3
  • 97
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster S., Fell D.A., Dandekar T. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 2000, 18(3):326-332.
    • (2000) Nat. Biotechnol. , vol.18 , Issue.3 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 99
    • 0016829888 scopus 로고
    • Stabilization of energy charge, generation of oscillations and multiple steady states in energy metabolism as a result of purely stoichiometric regulation
    • Selkov E. Stabilization of energy charge, generation of oscillations and multiple steady states in energy metabolism as a result of purely stoichiometric regulation. European Journal of Biochemistry 1975, 59(1):151-157.
    • (1975) European Journal of Biochemistry , vol.59 , Issue.1 , pp. 151-157
    • Selkov, E.1
  • 101
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr S.S., Milo R., Mangan S., Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 2002, 31(1):64-68.
    • (2002) Nat. Genet. , vol.31 , Issue.1 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 104
    • 0034105138 scopus 로고    scopus 로고
    • "Slave" metabolites and enzymes: A rapid way of delineating metabolic control
    • Teusink B., Westerhoff H.V. "Slave" metabolites and enzymes: A rapid way of delineating metabolic control. Eur. J. Biochem. 2000, 267(7):1889-1893.
    • (2000) Eur. J. Biochem. , vol.267 , Issue.7 , pp. 1889-1893
    • Teusink, B.1    Westerhoff, H.V.2
  • 105
    • 0030608156 scopus 로고    scopus 로고
    • Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations
    • Teusink B., Bakker B.M., Westerhoff H.V. Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations. Biochim. Biophys. Acta. 1996, 1275(3):204-212.
    • (1996) Biochim. Biophys. Acta. , vol.1275 , Issue.3 , pp. 204-212
    • Teusink, B.1    Bakker, B.M.2    Westerhoff, H.V.3
  • 108
    • 3142577523 scopus 로고    scopus 로고
    • Stochastic approaches for modeling in vivo reactions
    • Turner T.E., Schnell S., Burrage K. Stochastic approaches for modeling in vivo reactions. Comput. Biol. Chem. 2004, 28(3):165-178.
    • (2004) Comput. Biol. Chem. , vol.28 , Issue.3 , pp. 165-178
    • Turner, T.E.1    Schnell, S.2    Burrage, K.3
  • 109
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell
    • Tyson J.J., Chen K.C., Novak B. Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell. Current Opinion in Cell Biology 2003, 15(2):221-231.
    • (2003) Current Opinion in Cell Biology , vol.15 , Issue.2 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 110
    • 0000832972 scopus 로고
    • Evidence for a negative-feedback mechanism in the biosynthesis of isoleucine
    • Umbarger H.E. Evidence for a negative-feedback mechanism in the biosynthesis of isoleucine. Science 1956, 123(3202):848.
    • (1956) Science , vol.123 , Issue.3202 , pp. 848
    • Umbarger, H.E.1
  • 112
    • 0036526636 scopus 로고    scopus 로고
    • The mathematics of metabolic control analysis revisited
    • Visser D., Heijnen J.J. The mathematics of metabolic control analysis revisited. Metab. Eng. 2002, 4(2):114-123.
    • (2002) Metab. Eng. , vol.4 , Issue.2 , pp. 114-123
    • Visser, D.1    Heijnen, J.J.2
  • 113
    • 2442511156 scopus 로고    scopus 로고
    • Response experiments for nonlinear systems with application to reaction kinetics and genetics
    • (19)
    • Vlad M.O., Arkin A., Ross J. Response experiments for nonlinear systems with application to reaction kinetics and genetics. Proc. Natl. Acad. Sci. USA 2004, 101:7223-7228. (19).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7223-7228
    • Vlad, M.O.1    Arkin, A.2    Ross, J.3
  • 115
    • 0035823264 scopus 로고    scopus 로고
    • The small world inside large metabolic networks
    • (1478)
    • Wagner A., Fell D.A. The small world inside large metabolic networks. Proc. R. Soc. London. B. Biol. Sci. 2001, 268:1803-1810. (1478).
    • (2001) Proc. R. Soc. London. B. Biol. Sci. , vol.268 , pp. 1803-1810
    • Wagner, A.1    Fell, D.A.2
  • 116
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids-a structure for deoxyribose nucleic acid
    • Watson J.D., Crick F.H.C. Molecular structure of nucleic acids-a structure for deoxyribose nucleic acid. Nature 1953, 171(4356):737-738.
    • (1953) Nature , vol.171 , Issue.4356 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 119
    • 5044227742 scopus 로고    scopus 로고
    • The evolution of molecular biology into systems biology
    • Westerhoff H.V., Palsson B.O. The evolution of molecular biology into systems biology. Nat. Biotechnol. 2004, 22(10):1249-1252.
    • (2004) Nat. Biotechnol. , vol.22 , Issue.10 , pp. 1249-1252
    • Westerhoff, H.V.1    Palsson, B.O.2
  • 120
    • 0028234589 scopus 로고
    • Getting to the inside of cells using metabolic control analysis
    • Westerhoff H.V., Hofmeyr J.H., Kholodenko B.N. Getting to the inside of cells using metabolic control analysis. Biophys. Chem. 1994, 50(3):273-283.
    • (1994) Biophys. Chem. , vol.50 , Issue.3 , pp. 273-283
    • Westerhoff, H.V.1    Hofmeyr, J.H.2    Kholodenko, B.N.3
  • 121
    • 0035101471 scopus 로고    scopus 로고
    • Metabolic isotopomer labeling systems. Part I: global dynamic behavior
    • Wiechert W., Wurzel M. Metabolic isotopomer labeling systems. Part I: global dynamic behavior. Math Biosci. 2001, 169(2):173-205.
    • (2001) Math Biosci. , vol.169 , Issue.2 , pp. 173-205
    • Wiechert, W.1    Wurzel, M.2


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