A frequency domain approach to sensitivity analysis of biochemical networks

Journal of Physical Chemistry B

Volumn 108, Issue 3, 2004, Pages 1143-1152

  Ingalls, Brian P ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER AIDED SOFTWARE ENGINEERING; COMPUTER SIMULATION; FOURIER TRANSFORMS; FREQUENCY DOMAIN ANALYSIS; METABOLISM; SENSITIVITY ANALYSIS; STOICHIOMETRY;

BIOCHEMICAL NETWORKS; FREQUENCY DOMAIN TOOLS; METABOLIC CONTROL ANALYSIS;

BIOCHEMISTRY;

EID: 0742304058     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp036567u     Document Type: Article

References (29)

1. Fell, D. A. Biochem. J. 1992, 286, 313-330.
2. Heinrich, R.; Rapaport, T. A. Eur. J. Biochem. 1974, 42, 89-95.
3. Kascer, H.; Burns, J. A. Symp. Soc. Exp. Biol. 1973, 27, 65-104.
4. Savageau, M. A. Biochemical Systems Analysis. A Study of Function and Design in Molecular Biology; Addison-Wesley: Reading, MA, 1976.
5. Voit, E. O. Computational Analysis of Biochemical Systems; Cambridge University Press: Cambridge, 2000.
6. Acerenza, L.; Sauro, H. M.; Kacser, H. J. Theor. Biol. 1989, 51, 423-444.
7. Heinrich, R.; Reder, C. J. Theor. Biol. 1991, 151, 343-350.
8. Ingalls, B. P.; Sauro, H. M. J. Theor. Biol. 2003, 222, 23-36.
9. Kholodenko, B. N.; Demin, O. V.; Westerhoff, H. V. J. Phys. Chem. B 1997, 101, 2070-2081.
10. Kohn, M. C.; Whitley, L. M.; Garfinkel, D. J. Theor. Biol. 1979, 76, 437-452.
11. Demin, O. V.; Westerhoff, H. V.; Kholodenko, B. N. J. Phys. Chem. B 1999, 103, 10695-10710.
12. Morris, K. Introduction to Feedback Control; Harcourt Academic Press: London, 2001.
13. Samoilov, M.; Arkin, A.; Ross, J. J. Phys. Chem. A 2002, 106, 10205-10221.
14. Reder, C. J. Theor. Biol. 1988, 135, 175-201.
15. Hofmeyr, J.-H. S. In Proceedings of the International Conference on Systems Biology, Pasadena, California, 2000; p. 291-300.
16. Heinrich, R.; Schuster, S. The Regulation of Cellular Systems; Chapman & Hall: New York, 1996.
17. Lynn, P. A. An Introduction to the Analysis and Processing of Signals, 2nd ed,; MacMillan Press: London, 1982.
18. Strang, G. Introduction to Applied Mathematics; Wellesley-Cambridge Press: Wellseley, MA, 1986.
19. Goodwin, B. Adv. Enzyme Regulation 1965, 3, 425-438.
20. Xiu, Z.-L.; Zeng, A.-P.; Deckwer, W.-D. J. Biotechnol. 1997, 58, 125-140.
21. Santillán, M.; Mackey, M. C. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 1364-1369.
22. Bode, H. W. Network Analysis and Feedback Amplifier Design; Van Nostrand: New York, 1945.
23. Doyle, J., personal communication.
24. Yi, T.-M.; Huang, Y.; Simon, M. I.; Doyle, J. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 4649-4653.
25. Barkai, N.; Leibler, S. Nature 1997, 387, 913-917.
26. Iglesias, P. A.; Levchenko, A. In Proceedings of the 40th IEEE Conference on Decision and Control, Orlando, FL, p. 843-848.
27. Reijenga, K. A.; Westerhoff, H. V.; Kholodenko, B. N.; Snoep, J. L. Biophys. J. 2002, 82, 99-108.
28. Goldbetter, A. Biochemical Oscillations and Cellular Rhythms; Cambridge University Press: Cambridge, 1996.
29. Keener, J.; Sneyd, J. Mathematical Physiology; Springer-Verlag; New York, 1998.