-
1
-
-
0033569743
-
A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
-
Achsel, T., Brahms, H., Kastner, B., Bachi, A., Wilm, M., and Luhrmann, R. 1999. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 18: 5789-5802.
-
(1999)
EMBO J.
, vol.18
, pp. 5789-5802
-
-
Achsel, T.1
Brahms, H.2
Kastner, B.3
Bachi, A.4
Wilm, M.5
Luhrmann, R.6
-
2
-
-
0033567131
-
The yeast exosome and human PM-Scl are related complexes of 3′→5′ exonucleases
-
Allmang, C., Petfalski, E., Podtelejnikov, A., Mann, M., Tollervey, D., and Mitchell, P. 1999. The yeast exosome and human PM-Scl are related complexes of 3′→5′ exonucleases. Genes & Dev. 13: 2148-2158.
-
(1999)
Genes & Dev.
, vol.13
, pp. 2148-2158
-
-
Allmang, C.1
Petfalski, E.2
Podtelejnikov, A.3
Mann, M.4
Tollervey, D.5
Mitchell, P.6
-
3
-
-
0036023943
-
A complex prediction: Three-dimensional model of the yeast exosome
-
Aloy, P., Ciccarelli, F.D., Leutwein, C., Gavin, A.C., Superti-Furga, G., Bork, P., Bottcher, B., and Russell, R.B. 2002. A complex prediction: Three-dimensional model of the yeast exosome. EMBO Rep. 3: 628-635.
-
(2002)
EMBO Rep.
, vol.3
, pp. 628-635
-
-
Aloy, P.1
Ciccarelli, F.D.2
Leutwein, C.3
Gavin, A.C.4
Superti-Furga, G.5
Bork, P.6
Bottcher, B.7
Russell, R.B.8
-
4
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen, C.Y., Gherzi, R., Ong, S.E., Chan, E.L., Raijmakers, R., Pruijn, G.J., Stoecklin, G., Moroni, C., Mann, M., and Karin, M. 2001. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107: 451-464.
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
Pruijn, G.J.6
Stoecklin, G.7
Moroni, C.8
Mann, M.9
Karin, M.10
-
5
-
-
0038268182
-
Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA. Crystal structure of an oligomeric complex of yeast SmF
-
Collins, B.M., Cubeddu, L., Naidoo, N., Harrop, S.J., Kornfeld, G.D., Dawes, I.W., Curmi, P.M., and Mabbutt, B.C. 2003. Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA. Crystal structure of an oligomeric complex of yeast SmF. J. Biol. Chem. 278: 17291-17298.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 17291-17298
-
-
Collins, B.M.1
Cubeddu, L.2
Naidoo, N.3
Harrop, S.J.4
Kornfeld, G.D.5
Dawes, I.W.6
Curmi, P.M.7
Mabbutt, B.C.8
-
6
-
-
0034161254
-
Cap-dependent deadenylation of mRNA
-
Dehlin, E., Wormington, M., Korner, C.G., and Wahle, E. 2000. Cap-dependent deadenylation of mRNA. EMBO J. 19: 1079-1086.
-
(2000)
EMBO J.
, vol.19
, pp. 1079-1086
-
-
Dehlin, E.1
Wormington, M.2
Korner, C.G.3
Wahle, E.4
-
7
-
-
0034786143
-
BioLayout - An automatic graph layout algorithm for similarity visualization
-
Enright, A.J. and Ouzounis, C.A. 2001. BioLayout - An automatic graph layout algorithm for similarity visualization. Bioinformatics 17: 853-854.
-
(2001)
Bioinformatics
, vol.17
, pp. 853-854
-
-
Enright, A.J.1
Ouzounis, C.A.2
-
8
-
-
3543149502
-
The roles of inter-subunit interactions in exosome stability
-
Estevez, A.M., Lehner, B., Sanderson, C.M., Ruppert, T., and Clayton, C. 2003. The roles of inter-subunit interactions in exosome stability. J. Biol. Chem. 23: 23.
-
(2003)
J. Biol. Chem.
, vol.23
, pp. 23
-
-
Estevez, A.M.1
Lehner, B.2
Sanderson, C.M.3
Ruppert, T.4
Clayton, C.5
-
9
-
-
33749199129
-
Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins
-
Fromont-Racine, M., Mayes, A.E., Brunet-Simon, A., Rain, J.C., Colley, A., Dix, I., Decourty, L., Joly, N., Ricard, F., Beggs, J.D., et al. 2000. Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins. Yeast 17: 95-110.
-
(2000)
Yeast
, vol.17
, pp. 95-110
-
-
Fromont-Racine, M.1
Mayes, A.E.2
Brunet-Simon, A.3
Rain, J.C.4
Colley, A.5
Dix, I.6
Decourty, L.7
Joly, N.8
Ricard, F.9
Beggs, J.D.10
-
10
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
-
11
-
-
0034103227
-
Functions of Lsm proteins in mRNA degradation and splicing
-
He, W. and Parker, R. 2000. Functions of Lsm proteins in mRNA degradation and splicing. Curr. Opin. Cell Biol. 12: 346-350.
-
(2000)
Curr. Opin. Cell Biol.
, vol.12
, pp. 346-350
-
-
He, W.1
Parker, R.2
-
12
-
-
0035807308
-
Quality control of mRNA 3′-end processing is linked to the nuclear exosome
-
Hilleren, P., McCarthy, T., Rosbash, M., Parker, R., and Jensen, T.H. 2001. Quality control of mRNA 3′-end processing is linked to the nuclear exosome. Nature 413: 538-542.
-
(2001)
Nature
, vol.413
, pp. 538-542
-
-
Hilleren, P.1
McCarthy, T.2
Rosbash, M.3
Parker, R.4
Jensen, T.H.5
-
13
-
-
0036909093
-
The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
-
Ingelfinger, D., Arndt-Jovin, D.J., Luhrmann, R., and Achsel, T. 2002. The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci. RNA 8: 1489-1501.
-
(2002)
RNA
, vol.8
, pp. 1489-1501
-
-
Ingelfinger, D.1
Arndt-Jovin, D.J.2
Luhrmann, R.3
Achsel, T.4
-
14
-
-
0000577868
-
The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
-
Jacobs, J.S., Anderson, A.R., and Parker, R.P. 1998. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17: 1497-1506.
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Jacobs, J.S.1
Anderson, A.R.2
Parker, R.P.3
-
15
-
-
0030455820
-
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
-
James, P., Halladay, J., and Craig, E.A. 1996. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425-1436.
-
(1996)
Genetics
, vol.144
, pp. 1425-1436
-
-
James, P.1
Halladay, J.2
Craig, E.A.3
-
16
-
-
0037370460
-
Life after transcription - Revisiting the fate of messenger RNA
-
Khodursky, A.B. and Bernstein, J.A. 2003. Life after transcription - Revisiting the fate of messenger RNA. Trends Genet. 19: 113-115.
-
(2003)
Trends Genet.
, vol.19
, pp. 113-115
-
-
Khodursky, A.B.1
Bernstein, J.A.2
-
17
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
Koonin, E.V., Wolf, Y.I., and Aravind, L. 2001. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res. 11: 240-252.
-
(2001)
Genome Res.
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
18
-
-
0037133276
-
Ubiquitin-dependent mechanism regulates rapid turnover of AU-rich cytokine mRNAs
-
Laroia, G., Sarkar, B., and Schneider, R.J. 2002. Ubiquitin-dependent mechanism regulates rapid turnover of AU-rich cytokine mRNAs. Proc. Natl. Acad. Sci. 99: 1842-1846.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 1842-1846
-
-
Laroia, G.1
Sarkar, B.2
Schneider, R.J.3
-
19
-
-
0344688165
-
Analysis of a high throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region
-
Lehner, B., Semple, J.I., Brown, S.E., Counsell, D., Campbell, R.D., and Sanderson, C.M. 2004. Analysis of a high throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. Genomics 83: 153-167.
-
(2004)
Genomics
, vol.83
, pp. 153-167
-
-
Lehner, B.1
Semple, J.I.2
Brown, S.E.3
Counsell, D.4
Campbell, R.D.5
Sanderson, C.M.6
-
20
-
-
0141819096
-
Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
-
Lejeune, F., Li, X., and Maquat, L.E. 2003. Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol. Cell 12: 675-687.
-
(2003)
Mol. Cell
, vol.12
, pp. 675-687
-
-
Lejeune, F.1
Li, X.2
Maquat, L.E.3
-
21
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D., Chesneau, A., Hao, T., et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303: 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
22
-
-
0037009517
-
The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases
-
Liu, H., Rodgers, N.D., Jiao, X., and Kiledjian, M. 2002. The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. EMBO J. 21: 4699-4708.
-
(2002)
EMBO J.
, vol.21
, pp. 4699-4708
-
-
Liu, H.1
Rodgers, N.D.2
Jiao, X.3
Kiledjian, M.4
-
23
-
-
0036888905
-
Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
-
Lykke-Andersen, J. 2002. Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol. Cell. Biol. 22: 8114-8121.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8114-8121
-
-
Lykke-Andersen, J.1
-
24
-
-
0034704201
-
Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
-
Lykke-Andersen, J., Shu, M.D., and Steitz, J.A. 2000. Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103: 1121-1131.
-
(2000)
Cell
, vol.103
, pp. 1121-1131
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
25
-
-
0029829056
-
Identification of novel M phase phosphoproteins by expression cloning
-
Matsumoto-Taniura, N., Pirollet, F., Monroe, R., Gerace, L., and Westendorf, J.M. 1996. Identification of novel M phase phosphoproteins by expression cloning. Mol. Biol. Cell 7: 1455-1469.
-
(1996)
Mol. Biol. Cell
, vol.7
, pp. 1455-1469
-
-
Matsumoto-Taniura, N.1
Pirollet, F.2
Monroe, R.3
Gerace, L.4
Westendorf, J.M.5
-
26
-
-
0037762554
-
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′→5′ degradation
-
Mitchell, P. and Tollervey, D. 2003. An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′→ 5′ degradation. Mol. Cell 11: 1405-1413.
-
(2003)
Mol. Cell
, vol.11
, pp. 1405-1413
-
-
Mitchell, P.1
Tollervey, D.2
-
27
-
-
0037080834
-
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
-
Mukherjee, D., Gao, M., O'Connor, J.P., Raijmakers, R., Pruijn, G., Lutz, C.S., and Wilusz, J. 2002. The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J. 21: 165-174.
-
(2002)
EMBO J.
, vol.21
, pp. 165-174
-
-
Mukherjee, D.1
Gao, M.2
O'Connor, J.P.3
Raijmakers, R.4
Pruijn, G.5
Lutz, C.S.6
Wilusz, J.7
-
28
-
-
0036977391
-
Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring
-
Raijmakers, R., Egberts, W.V., van Venrooij, W.J., and Pruijn, G.J. 2002. Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring. J. Mol. Biol. 323: 653-663.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 653-663
-
-
Raijmakers, R.1
Egberts, W.V.2
van Venrooij, W.J.3
Pruijn, G.J.4
-
29
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm, M., Storm, C.E., and Sonnhammer, E.L. 2001. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314: 1041-1052.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
30
-
-
0033564627
-
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
-
Salgado-Garrido, J., Bragado-Nilsson, E., Kandels-Lewis, S., and Seraphin, B. 1999. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 18: 3451-3462.
-
(1999)
EMBO J.
, vol.18
, pp. 3451-3462
-
-
Salgado-Garrido, J.1
Bragado-Nilsson, E.2
Kandels-Lewis, S.3
Seraphin, B.4
-
31
-
-
3242892025
-
The jury is out on 'guilt by association' trials
-
Semple, J.I., Sanderson, C.M., and Campbell, R.D. 2002. The jury is out on 'guilt by association' trials. Briefings Func. Genom. Proteom. 1: 40-52.
-
(2002)
Briefings Func. Genom. Proteom.
, vol.1
, pp. 40-52
-
-
Semple, J.I.1
Sanderson, C.M.2
Campbell, R.D.3
-
32
-
-
0034751160
-
Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
-
Serin, G., Gersappe, A., Black, J.D., Aronoff, R., and Maquat, L.E. 2001. Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). Mol. Cell. Biol. 21: 209-223.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 209-223
-
-
Serin, G.1
Gersappe, A.2
Black, J.D.3
Aronoff, R.4
Maquat, L.E.5
-
33
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth, U. and Parker, R. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
34
-
-
0037168586
-
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
-
Strausberg, R.L., Feingold, E.A., Grouse, L.H., Derge, J.G., Klausner, R.D., Collins, F.S., Wagner, L., Shenmen, C.M., Schuler, G.D., Altschul, S.F., et al. 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl. Acad. Sci. 99: 16899-16903.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 16899-16903
-
-
Strausberg, R.L.1
Feingold, E.A.2
Grouse, L.H.3
Derge, J.G.4
Klausner, R.D.5
Collins, F.S.6
Wagner, L.7
Shenmen, C.M.8
Schuler, G.D.9
Altschul, S.F.10
-
35
-
-
0036164937
-
Running rings around RNA: A superfamily of phosphate-dependent RNases
-
Symmons, M.F., Williams, M.G., Luisi, B.F., Jones, G.H., and Carpousis, A.J. 2002. Running rings around RNA: A superfamily of phosphate-dependent RNases. Trends Biochem. Sci. 27: 11-18.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 11-18
-
-
Symmons, M.F.1
Williams, M.G.2
Luisi, B.F.3
Jones, G.H.4
Carpousis, A.J.5
-
36
-
-
0037121926
-
Human Dcp2: A catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
-
Van Dijk, E., Cougot, N., Meyer, S., Babajko, S., Wahle, E., and Seraphin, J. 2002. Human Dcp2: A catalytically active mRNA decapping enzyme located in specific cytoplasmic structures. EMBO J. 21: 6915-6924.
-
(2002)
EMBO J.
, vol.21
, pp. 6915-6924
-
-
Van Dijk, E.1
Cougot, N.2
Meyer, S.3
Babajko, S.4
Wahle, E.5
Seraphin, J.6
-
37
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S., and Bork, P. 2002. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417: 399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
38
-
-
0036677083
-
mRNA surveillance: The perfect persist
-
Wagner, E. and Lykke-Andersen, J. 2002. mRNA surveillance: The perfect persist. J. Cell Sci. 115: 3033-3038.
-
(2002)
J. Cell Sci.
, vol.115
, pp. 3033-3038
-
-
Wagner, E.1
Lykke-Andersen, J.2
-
39
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout, A.J., Sordella, R., Lu, X., Hartley, J.L., Temple, G.F., Brasch, M.A., Thierry-Mieg, N., and Vidal, M. 2000. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287: 116-122.
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.J.1
Sordella, R.2
Lu, X.3
Hartley, J.L.4
Temple, G.F.5
Brasch, M.A.6
Thierry-Mieg, N.7
Vidal, M.8
-
40
-
-
0035861864
-
Functional link between the mammalian exosome and mRNA decapping
-
Wang, Z. and Kiledjian, M. 2001. Functional link between the mammalian exosome and mRNA decapping. Cell 107: 751-762.
-
(2001)
Cell
, vol.107
, pp. 751-762
-
-
Wang, Z.1
Kiledjian, M.2
-
41
-
-
0036792078
-
The hDcp2 protein is a mammalian mRNA decapping enzyme
-
Wang, Z., Jiao, X., Carr-Schmid, A., and Kiledjian, M. 2002. The hDcp2 protein is a mammalian mRNA decapping enzyme. Proc. Natl. Acad. Sci. 99: 12663-12668.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 12663-12668
-
-
Wang, Z.1
Jiao, X.2
Carr-Schmid, A.3
Kiledjian, M.4
-
42
-
-
0035320773
-
The cap-to-tail guide to mRNA turnover
-
Wilusz, C.J., Wormington, M., and Peltz, S.W. 2001. The cap-to-tail guide to mRNA turnover. Nat. Rev. Mol. Cell Biol. 2: 237-246.
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 237-246
-
-
Wilusz, C.J.1
Wormington, M.2
Peltz, S.W.3
-
43
-
-
0034073993
-
Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p
-
Xue Y., Bai, X., Lee, I., Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A.W. 2000. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. Mol. Cell. Biol. 20: 4006-4015.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 4006-4015
-
-
Xue, Y.1
Bai, X.2
Lee, I.3
Kallstrom, G.4
Ho, J.5
Brown, J.6
Stevens, A.7
Johnson, A.W.8
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