Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA: Crystal structure of an oligomeric complex of yeast SmF

Journal of Biological Chemistry

Volumn 278, Issue 19, 2003, Pages 17291-17298

  Collins, Brett M ^a   Cubeddu, Liza ^b,e   Naidoo, Nishen ^b   Harrop, Stephen J ^c,d   Kornfeld, Geoff D ^c   Dawes, Ian W ^c   Curmi, Paul M G ^c,d   Mabbutt, Bridget C ^b  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b MACQUARIE UNIVERSITY   (Australia)

^c UNIVERSITY OF NEW SOUTH WALES   (Australia)

^d ST VINCENT S HOSPITAL   (Australia)

^e UNIVERSITY OF ST ANDREWS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DNA; OLIGOMERS; RNA; YEAST;

HOMOMERIC ASSEMBLY;

PROTEINS;

DNA; LSM3 PROTEIN; PROTEIN SM; RECOMBINANT PROTEIN; RIBONUCLEOPROTEIN; RNA; SINGLE STRANDED DNA; SME PROTEIN; SMF PROTEIN; UNCLASSIFIED DRUG; SACCHAROMYCES CEREVISIAE PROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN;

ARTICLE; BINDING AFFINITY; COMPLEX FORMATION; CRYSTAL STRUCTURE; ELECTRON MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RNA BINDING; RNA SPLICING; SACCHAROMYCES CEREVISIAE; YEAST; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; DIMERIZATION; METABOLISM; PROTEIN BINDING;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; HOMO; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

BINDING SITES; DIMERIZATION; DNA; MODELS, MOLECULAR; PROTEIN BINDING; RIBONUCLEOPROTEINS, SMALL NUCLEAR; RNA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 0038268182     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M211826200     Document Type: Article

References (49)

1. Burge, C. B., Tuschl, T., and Sharp, P. A. (1999) in The RNA World (Gesteland, R. F., Cech, T. R., and Atkins, J. F., eds) 2nd Ed., pp. 525-560, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
2. Seto, A. G., Zaug, A. J., Sobel, S. G., Wolin, S. L., and Cech, T. R. (1999) Science 401, 177-180
3. Blumenthal, T. (1995) Trends Genet. 11, 132-136
4. Bouveret, E., Rigaut, G., Shevchenko, A., Wilm, M., and Séraphin, B. (2000) EMBO J. 19, 1661-1671
5. Tharun, S., He, W., Mayes, A. E., Lennertz, P., Beggs, J. D., and Parker, R. (2000) Nature 404, 515-518
6. Séraphin, B. (1995) EMBO J. 14, 2089-2098
7. Hermann, H., Fabrizio, P., Raker, V. A., Foulaki, K., Hornig, H., Brahms, H., and Lührmann, R. (1995) EMBO J. 14, 2076-2088
8. Cooper, M., Johnston, L. H., and Beggs, J. D. (1995) EMBO J. 14, 2066-2075
9. Kambach, C., Walke, S., Young, R., Avis, J. M., delafortelle, E., Raker, V. A., Luhrmann, R., Li, J., and Nagai, K. (1999) Cell 96, 375-387
10. Collins, B. M., Harrop, S. J., Kornfeld, G. D., Dawes, I. W., Curmi, P. M. G., and Mabbutt, B. C. (2001) J. Mol. Biol. 309, 915-923
11. Mura, C., Cascio, D., Sawaya, M. R., and Eisenberg, D. S. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 5532-5537
12. Törö, I., Thore, S. P., Mayer, C., Basquin, J. R. M., Séraphin, B., and Suck, D. (2001) EMBO J. 20, 2293-2303
13. Schumacher, M. A., Pearson, R. F., Moller, T., Valentin-Hansen, P., and Brennan, R. G. (2002) EMBO J. 21, 3546-3556
14. Toro, I., Basquin, J., Teo-Dreher, H., Suck, D. (2002) J. Mol. Biol. 320, 129-142
15. Walke, S., Bragado-Nilsson, E., Séraphin, B., and Nagai, K. (2001) J. Mol. Biol. 308 49-58
16. Raker, V. A., Hartmuth, K., Kastner, B., and Lührmann, R. (1999) Mol. Cell. Biol. 19, 6554-6565
17. Stark, H., Dube, P., Lührmann, R., and Kastner, B. (2001) Nature 409, 539-542
18. Thore, S., Mayer, C., Sauter, C., Weeks, S., and Suck, D. (2003) J. Biol. Chem. 278, 1239-1247
19. Urlaub, H., Raker, V. A., Kostka, S., and Lührmann, R. (2001) EMBO J. 20, 187-196
20. Achsel, T., Brahms, H., Kastner, B., Bachi, A., Wilm, M., and Lührmann, R. (1999) EMBO J. 18, 5789-5802
21. Mayes, A. E., Verdone, L., Legrain, P., and Beggs, J. D. (1999) EMBO J. 18, 4321-4331
22. Salgado-Garrido, J., Bragodo-Nilsson, E., Kandels-Lewis, S., and Séraphin, B. (1999) EMBO J. 18, 3451-3462
23. Achsel, T., Stark, H., and Lührmann, R. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 3685-3689
24. Zhang, A., Wassarman, K. M., Ortega, J., Steven, A. C., and Storz, G. (2002) Mol. Cell 9, 11-22
25. Moller, T. M., Franch, T., Jrup, P. H., Keene, D. R., Bächinger, H. P., Brennan, R. G., and Valentin-Hansen, P. (2002) Mol. Cell 9, 23-30
26. Neylon, C., Brown, S. E., Kralicek, A. V., Miles, C. S., Love, C. A., and Dixon, N. E. (2000) Biochemistry 39, 11989-11999
27. Schagger, H., and von Jagow, G. (1987) Anal. Biochem. 166, 368-379
28. Laurent, T. C., and Killander, J. (1964) J. Chromatogr. 14, 317-330
29. Leslie, A. G. W. (1992) Joint CCP + ESF-EAMCB Newsletter on Protein Crystallogr. 26
30. Dodson, E. J., Winn, M., and Ralph, A. (1997) Methods Enzymol. 277, 620-634
31. Navaza, J. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 157-163
32. Brünger, A. T., Adams, P. D., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kuntsleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
33. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
34. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 122-133
35. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497
36. Cathala, G., and Brunel, C. (1990) Nucleic Acids Res. 18, 201
37. Kastner, B., Bach, M., and Lührmann, R. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 1710-1714
38. Plessel, G., Lührmann, R., and Kastner, B. (1997) J. Mol. Biol. 265, 87-94
39. Raker, V. A., Plessel, G., and Lührmann, R. (1996) EMBO J. 15, 2256-2269
40. Camasses, A., Bragado-Nilsson, E., Martin, R., Séraphin, B., and Bordonne, R. M. (1998) Mol. Cell. Biol. 18, 1956-1966
41. Fury, M. G., Zhang, W., Christodouloupolos, I., and Zieve, G. W. (1997) Exp. Cell Res. 257, 63-69
42. Palfi, Z., Lücke, S., Lahm, H.-W., Lane, W. S., Kruft, V., Bragado-Nilsson, E., Séraphin, B., and Bindereif, A. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 8967-8972
43. Liu, Q., Fischer, U., Wang, F., and Dreyfuss, G. (1997) Cell 90, 1013-1021
44. Mackenzie, A. E., and Gendron, N. H. (2001) Nat. Struct. Biol. 8, 13-15
45. Selenko, P., Sprangers, R., Stier, G., Bühler, D., Fischer, U., and Sattler, M. (2001) Nat. Struct. Biol. 8, 27-31
46. Meister, G., Eggert, C., Buhler, D., Brahms, H., Kambach, C., and Fischer, U. (2001) Curr. Biol. 11, 1990-1994
47. Anantharaman, V., Koonin, E. V., and Aravind, L. (2002) Nucleic Acids Res. 30, 1427-1464
48. Diederichs, K., and Karplus, P. A. (1997) Nat. Struct. Biol. 4, 269-275
49. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr, 26, 283-291