메뉴 건너뛰기




Volumn 69, Issue 1, 2007, Pages 161-173

Archaeal diversity and community structure in a Swedish barley field: Specificity of the EK510R/(EURY498) 16S rDNA primer

Author keywords

Crenarchaea; DGGE; EK510R (EURY498) primer specificity; Euryarchaea; Soil; SSUrRNA

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA;

EID: 33947231779     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2006.12.018     Document Type: Article
Times cited : (20)

References (92)
  • 1
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
    • Acinas S.G., Marcelino L.A., Klepac-Ceraj V., and Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol. 186 (2004) 2629-2635
    • (2004) J. Bacteriol. , vol.186 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 0029663960 scopus 로고    scopus 로고
    • Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridisation
    • Alfreider A., Pernthaler J., Amann R., Sattler B., Glockner F.-O., Wille A., and Psenner R. Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridisation. Appl. Environ. Microbiol. 62 (1996) 2138-2144
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2138-2144
    • Alfreider, A.1    Pernthaler, J.2    Amann, R.3    Sattler, B.4    Glockner, F.-O.5    Wille, A.6    Psenner, R.7
  • 3
    • 2342586717 scopus 로고    scopus 로고
    • 16 S rDNA primers and the unbiased assessment of thermophile diversity
    • Baker G.C., and Cowan D.A. 16 S rDNA primers and the unbiased assessment of thermophile diversity. Biochem. Soc. Trans. 32 (2004) 218-221
    • (2004) Biochem. Soc. Trans. , vol.32 , pp. 218-221
    • Baker, G.C.1    Cowan, D.A.2
  • 4
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker G.C., Smith J.J., and Cowan D.A. Review and re-analysis of domain-specific 16S primers. J. Microbiol. Methods 55 (2003) 541-555
    • (2003) J. Microbiol. Methods , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 6
    • 0030326394 scopus 로고    scopus 로고
    • Phylogenetic perspective on microbial life in hydrothermal ecosystems, past and present
    • (discussion 32-29)
    • Barns S.M., Delwiche C.F., Palmer J.D., Dawson S.C., Hershberger K.L., and Pace N.R. Phylogenetic perspective on microbial life in hydrothermal ecosystems, past and present. Ciba Found. Symp. 202 (1996) 24-32 (discussion 32-29)
    • (1996) Ciba Found. Symp. , vol.202 , pp. 24-32
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Dawson, S.C.4    Hershberger, K.L.5    Pace, N.R.6
  • 7
    • 4143064576 scopus 로고    scopus 로고
    • Agriculture soil manipulation: the use of bacteria, manuring, and plowing
    • v Elsas J.D., Trevors J.T., and W. E.M.H. (Eds), Marcel Dekker, Inc., New York
    • Beauchamp E.G., and Hume D.J. Agriculture soil manipulation: the use of bacteria, manuring, and plowing. In: v Elsas J.D., Trevors J.T., and W. E.M.H. (Eds). Modern Soil Microbiology (1997), Marcel Dekker, Inc., New York 643-665
    • (1997) Modern Soil Microbiology , pp. 643-665
    • Beauchamp, E.G.1    Hume, D.J.2
  • 9
    • 0038009298 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in soils from agro-ecosystems
    • Buckley D.H., and Schmidt T.M. Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ. Microbiol. 5 (2003) 441-452
    • (2003) Environ. Microbiol. , vol.5 , pp. 441-452
    • Buckley, D.H.1    Schmidt, T.M.2
  • 10
    • 0031733317 scopus 로고    scopus 로고
    • Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils
    • Buckley D.H., Graber J.R., and Schmidt T.M. Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils. Appl. Environ. Microbiol. 64 (1998) 4333-4339
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4333-4339
    • Buckley, D.H.1    Graber, J.R.2    Schmidt, T.M.3
  • 12
    • 9144223171 scopus 로고    scopus 로고
    • Nitrate reduction and the nitrogen cycle in archaea
    • Cabello P., Roldan M.D., and Moreno-Vivian C. Nitrate reduction and the nitrogen cycle in archaea. Microbiology 150 (2004) 3527-3546
    • (2004) Microbiology , vol.150 , pp. 3527-3546
    • Cabello, P.1    Roldan, M.D.2    Moreno-Vivian, C.3
  • 13
    • 8744293847 scopus 로고    scopus 로고
    • Phylogenetic characterization of methanogenic assemblages in eutrophic and oligotrophic areas of the Florida Everglades
    • Castro H., Ogram A., and Reddy K.R. Phylogenetic characterization of methanogenic assemblages in eutrophic and oligotrophic areas of the Florida Everglades. Appl. Environ. Microbiol. 70 (2004) 6559-6568
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6559-6568
    • Castro, H.1    Ogram, A.2    Reddy, K.R.3
  • 14
    • 33744483524 scopus 로고    scopus 로고
    • Archaeal habitats-from the extreme to the ordinary
    • Chaban B., Ng S.Y., and Jarrell K.F. Archaeal habitats-from the extreme to the ordinary. Can. J. Microbiol. 52 (2006) 73-116
    • (2006) Can. J. Microbiol. , vol.52 , pp. 73-116
    • Chaban, B.1    Ng, S.Y.2    Jarrell, K.F.3
  • 15
    • 0034964968 scopus 로고    scopus 로고
    • The diversity of Archaea and bacteria in association with the roots of Zea mays L
    • Chelius M.K., and Triplett E.W. The diversity of Archaea and bacteria in association with the roots of Zea mays L. Microb. Ecol. 41 (2001) 252-263
    • (2001) Microb. Ecol. , vol.41 , pp. 252-263
    • Chelius, M.K.1    Triplett, E.W.2
  • 16
    • 33745012854 scopus 로고    scopus 로고
    • Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil
    • Conrad R., Erkel C., and Liesack W. Rice cluster I methanogens, an important group of Archaea producing greenhouse gas in soil. Curr. Opin. Biotechnol. 3 (Jan 17) (2006) 262-267
    • (2006) Curr. Opin. Biotechnol. , vol.3 Jan 17 , pp. 262-267
    • Conrad, R.1    Erkel, C.2    Liesack, W.3
  • 17
    • 33644959684 scopus 로고    scopus 로고
    • An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation (FISH)
    • Crocetti G., Murto M., and Bjornsson L. An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation (FISH). J. Microbiol. Methods 65 (2006) 194-201
    • (2006) J. Microbiol. Methods , vol.65 , pp. 194-201
    • Crocetti, G.1    Murto, M.2    Bjornsson, L.3
  • 18
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong E.F. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. U. S. A. 89 (1992) 5685-5689
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 19
    • 0031769609 scopus 로고    scopus 로고
    • Everything in moderation: Archaea as 'non-extremophiles'
    • DeLong E.F. Everything in moderation: Archaea as 'non-extremophiles'. Curr. Opin. Genet. Dev. 8 (1998) 649-654
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 649-654
    • DeLong, E.F.1
  • 20
    • 0041386130 scopus 로고    scopus 로고
    • Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
    • DeSantis T.Z., Dubosarskiy I., Murray S.R., and Andersen G.L. Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA. Bioinformatics 19 (2003) 1461-1468
    • (2003) Bioinformatics , vol.19 , pp. 1461-1468
    • DeSantis, T.Z.1    Dubosarskiy, I.2    Murray, S.R.3    Andersen, G.L.4
  • 21
    • 1142297453 scopus 로고    scopus 로고
    • PCR-DGGE fingerprinting: novel strategies for detection of microbes in food
    • Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J. Microbiol. Methods 56 (2004) 297-314
    • (2004) J. Microbiol. Methods , vol.56 , pp. 297-314
    • Ercolini, D.1
  • 23
    • 0031811411 scopus 로고    scopus 로고
    • Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soil
    • Felske A., and Akkermans A.D.L. Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soil. Microb. Ecol. 36 (1998) 31-36
    • (1998) Microb. Ecol. , vol.36 , pp. 31-36
    • Felske, A.1    Akkermans, A.D.L.2
  • 26
    • 0033867966 scopus 로고    scopus 로고
    • Taxonomic phylognetic and ecological diversity of methanogen Archaea
    • Garcia J.L., Patel B.K.C., and Oliver B. Taxonomic phylognetic and ecological diversity of methanogen Archaea. Anaerobe 6 (2000) 205-206
    • (2000) Anaerobe , vol.6 , pp. 205-206
    • Garcia, J.L.1    Patel, B.K.C.2    Oliver, B.3
  • 27
    • 33644855188 scopus 로고    scopus 로고
    • New insights into the lifestyle of the cold-loving SM1 euryarchaeon: natural growth as a monospecies biofilm in the subsurface
    • Henneberger R., Moissl C., Amann T., Rudolph C., and Huber R. New insights into the lifestyle of the cold-loving SM1 euryarchaeon: natural growth as a monospecies biofilm in the subsurface. Appl. Environ. Microbiol. 72 (2006) 192-199
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 192-199
    • Henneberger, R.1    Moissl, C.2    Amann, T.3    Rudolph, C.4    Huber, R.5
  • 28
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • Huber H., Hohn M.J., Rachel R., Fuchs T., Wimmer V.C., and Stetter K.O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417 (2002) 63-67
    • (2002) Nature , vol.417 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 29
    • 0037386511 scopus 로고    scopus 로고
    • The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life
    • Huber H., Hohn M.J., Stetter K.O., and Rachel R. The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life. Res. Microbiol. 154 (2003) 165-171
    • (2003) Res. Microbiol. , vol.154 , pp. 165-171
    • Huber, H.1    Hohn, M.J.2    Stetter, K.O.3    Rachel, R.4
  • 30
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P., Goebel B.M., and Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180 (1998) 4765-4774
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 32
    • 0002217422 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis can fail to separate 16S rDNA fragments with multiple base differences
    • Jackson C.R., Roden E.E., and Churchill P.F. Denaturing gradient gel electrophoresis can fail to separate 16S rDNA fragments with multiple base differences. Mol. Biol. Today 1 (2000) 49-51
    • (2000) Mol. Biol. Today , vol.1 , pp. 49-51
    • Jackson, C.R.1    Roden, E.E.2    Churchill, P.F.3
  • 33
    • 0033771975 scopus 로고    scopus 로고
    • Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1)
    • Jurgens G., Glockner F., Amann R., Saano A., Montonen L., Likolammi M., and Munster U. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1). FEMS Microbiol. Ecol. 34 (2000) 45-56
    • (2000) FEMS Microbiol. Ecol. , vol.34 , pp. 45-56
    • Jurgens, G.1    Glockner, F.2    Amann, R.3    Saano, A.4    Montonen, L.5    Likolammi, M.6    Munster, U.7
  • 35
    • 18944376202 scopus 로고    scopus 로고
    • Physiological and molecular characterisation of a microbial community established in unsaturated, petroleum contaminated soil
    • Kasai Y., Takahata Y., Hoaki T., and Watanabe K. Physiological and molecular characterisation of a microbial community established in unsaturated, petroleum contaminated soil. Environ. Microbiol. (2005) 806-818
    • (2005) Environ. Microbiol. , pp. 806-818
    • Kasai, Y.1    Takahata, Y.2    Hoaki, T.3    Watanabe, K.4
  • 39
    • 0001093837 scopus 로고    scopus 로고
    • Microbial diversity in soil: the need for a combined approach using molecular and cultivation techniques
    • v Elsas J.D., Trevors J.T., and W. E.M.H. (Eds), Marcel Dekker, Inc., New York
    • Liesack W., Jannssen P.H., Rainey F.A., Ward-Rainey N.L., and Stackebrandt E. Microbial diversity in soil: the need for a combined approach using molecular and cultivation techniques. In: v Elsas J.D., Trevors J.T., and W. E.M.H. (Eds). Modern Soil Microbiology (1997), Marcel Dekker, Inc., New York 375-427
    • (1997) Modern Soil Microbiology , pp. 375-427
    • Liesack, W.1    Jannssen, P.H.2    Rainey, F.A.3    Ward-Rainey, N.L.4    Stackebrandt, E.5
  • 40
    • 23644433664 scopus 로고    scopus 로고
    • In situ stable isotope probing of methanogenic archaea in the rice rhizosphere
    • Lu Y., and Conrad R. In situ stable isotope probing of methanogenic archaea in the rice rhizosphere. Science 309 (2005) 1088-1090
    • (2005) Science , vol.309 , pp. 1088-1090
    • Lu, Y.1    Conrad, R.2
  • 41
    • 0029967167 scopus 로고    scopus 로고
    • DNA rehybridization during PCR: the 'Cot effect' and its consequences
    • Mathieu-Daude F., Welsh J., Vogt T., and McClelland M. DNA rehybridization during PCR: the 'Cot effect' and its consequences. Nucleic Acids Res. (1996) 2080-2086
    • (1996) Nucleic Acids Res. , pp. 2080-2086
    • Mathieu-Daude, F.1    Welsh, J.2    Vogt, T.3    McClelland, M.4
  • 42
    • 0037469604 scopus 로고    scopus 로고
    • Methanogenic population structure in a variety of anaerobic bioreactors
    • McHugh S., Carton M., Mahony T., and O'Flaherty V. Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol. Lett. 219 (2003) 297-304
    • (2003) FEMS Microbiol. Lett. , vol.219 , pp. 297-304
    • McHugh, S.1    Carton, M.2    Mahony, T.3    O'Flaherty, V.4
  • 43
    • 0346195660 scopus 로고    scopus 로고
    • Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge
    • Mehta M.P., Butterfield D.A., and Baross J.A. Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge. Appl. Environ. Microbiol. 69 (2003) 960-970
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 960-970
    • Mehta, M.P.1    Butterfield, D.A.2    Baross, J.A.3
  • 44
    • 25144431975 scopus 로고    scopus 로고
    • Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean
    • Mehta M.P., Huber J.A., and Baross J.A. Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean. Environ. Microbiol. 7 (2005) 1525-1534
    • (2005) Environ. Microbiol. , vol.7 , pp. 1525-1534
    • Mehta, M.P.1    Huber, J.A.2    Baross, J.A.3
  • 46
    • 0033152336 scopus 로고    scopus 로고
    • DGGE/TGGE a method for identifying genes from natural ecosystems
    • Muyzer G. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol. 2 (1999) 317-322
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 317-322
    • Muyzer, G.1
  • 47
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73 (1998) 127-141
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 48
    • 0034233490 scopus 로고    scopus 로고
    • Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products
    • Nakatsu C.H., Torsvik V., and Ovreas L. Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci. Soc. Am. J. 64 (2000) 1382-1388
    • (2000) Soil Sci. Soc. Am. J. , vol.64 , pp. 1382-1388
    • Nakatsu, C.H.1    Torsvik, V.2    Ovreas, L.3
  • 49
    • 1142281824 scopus 로고    scopus 로고
    • Design of 16S rRNA-targeted oligonucleotide probes for detecting cultured and uncultured archaeal lineages in high-temperature environments
    • Nercessian O., Prokofeva M., Lebedinski A., L'Haridon S., Cary C., Prieur D., and Jeanthon C. Design of 16S rRNA-targeted oligonucleotide probes for detecting cultured and uncultured archaeal lineages in high-temperature environments. Environ. Microbiol. 6 (2004) 170-182
    • (2004) Environ. Microbiol. , vol.6 , pp. 170-182
    • Nercessian, O.1    Prokofeva, M.2    Lebedinski, A.3    L'Haridon, S.4    Cary, C.5    Prieur, D.6    Jeanthon, C.7
  • 50
    • 33646497904 scopus 로고    scopus 로고
    • Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle?
    • Nicol G.W., and Schleper C. Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle?. Trends Microbiol. 14 (2006) 207-212
    • (2006) Trends Microbiol. , vol.14 , pp. 207-212
    • Nicol, G.W.1    Schleper, C.2
  • 51
    • 0037345250 scopus 로고    scopus 로고
    • The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil
    • Nicol G.W., Glover L.A., and Prosser J.I. The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil. Environ. Microbiol. 5 (2003) 152-162
    • (2003) Environ. Microbiol. , vol.5 , pp. 152-162
    • Nicol, G.W.1    Glover, L.A.2    Prosser, J.I.3
  • 52
    • 0242307117 scopus 로고    scopus 로고
    • Molecular analysis of methanogenic archaeal communities in managed and natural upland pasture soils
    • Nicol G.W., Glover L.A., and Prosser J.I. Molecular analysis of methanogenic archaeal communities in managed and natural upland pasture soils. Glob. Chang. Biol. 9 (2003) 1451-1457
    • (2003) Glob. Chang. Biol. , vol.9 , pp. 1451-1457
    • Nicol, G.W.1    Glover, L.A.2    Prosser, J.I.3
  • 53
    • 3543109163 scopus 로고    scopus 로고
    • Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil
    • Nicol G.W., Webster G., Glover L.A., and Prosser J.I. Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil. Environ. Microbiol. 6 (2004) 861-867
    • (2004) Environ. Microbiol. , vol.6 , pp. 861-867
    • Nicol, G.W.1    Webster, G.2    Glover, L.A.3    Prosser, J.I.4
  • 54
    • 14344252220 scopus 로고    scopus 로고
    • Primary succession of soil Crenarchaeota across a receding glacier foreland
    • Nicol G.W., Tscherko D., Embley T.M., and Prosser J.I. Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ. Microbiol. 7 (2005) 337-347
    • (2005) Environ. Microbiol. , vol.7 , pp. 337-347
    • Nicol, G.W.1    Tscherko, D.2    Embley, T.M.3    Prosser, J.I.4
  • 55
    • 14844295442 scopus 로고    scopus 로고
    • Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels
    • Nikolausz M., Sipos R., Revesz S., Szekely A., and Marialigeti K. Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels. FEMS Microbiol. Lett. (2005) 385-390
    • (2005) FEMS Microbiol. Lett. , pp. 385-390
    • Nikolausz, M.1    Sipos, R.2    Revesz, S.3    Szekely, A.4    Marialigeti, K.5
  • 56
    • 0033774886 scopus 로고    scopus 로고
    • Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions
    • Normander B., and Prosser J.I. Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions. Appl. Environ. Microbiol. 66 (2000) 4372-4377
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4372-4377
    • Normander, B.1    Prosser, J.I.2
  • 57
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T., Selezi D., Quaiser A., Bonch-Osmolovskaya L., and Schleper C. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5 (2003) 787-797
    • (2003) Environ. Microbiol. , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 58
    • 0034039228 scopus 로고    scopus 로고
    • Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris
    • Oda Y., Slagman S.J., Meijer W.G., Forney L.J., and Gottschal J.C. Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris. FEMS Microb. Ecol. (2000) 205-213
    • (2000) FEMS Microb. Ecol. , pp. 205-213
    • Oda, Y.1    Slagman, S.J.2    Meijer, W.G.3    Forney, L.J.4    Gottschal, J.C.5
  • 60
    • 0001661165 scopus 로고    scopus 로고
    • Adaptation of bacteria to soil conditions: applications of molecular physiology in soil microbiology
    • Modern Soil Microbiology. Elsas J.D.V., Trevors J.T., and Wellington E.M.H. (Eds), Marcel Dekker, Inc., New York
    • Overbeek L.V., and Elsas J.D.V. Adaptation of bacteria to soil conditions: applications of molecular physiology in soil microbiology. In: Elsas J.D.V., Trevors J.T., and Wellington E.M.H. (Eds). Modern Soil Microbiology. Books in Soils, Plants, and the Environment vol. 56 (1997), Marcel Dekker, Inc., New York 441-478
    • (1997) Books in Soils, Plants, and the Environment , vol.56 , pp. 441-478
    • Overbeek, L.V.1    Elsas, J.D.V.2
  • 61
    • 0041703165 scopus 로고    scopus 로고
    • Effects of freeze-thaw of stress during soil storage on microbial communities and methidation degradation
    • Pesaro M., Widmer F., Nicollier G., and Zeyer J. Effects of freeze-thaw of stress during soil storage on microbial communities and methidation degradation. Soil Biol. Biochem. 35 (2003) 1049-1061
    • (2003) Soil Biol. Biochem. , vol.35 , pp. 1049-1061
    • Pesaro, M.1    Widmer, F.2    Nicollier, G.3    Zeyer, J.4
  • 62
    • 0028943313 scopus 로고
    • Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soils
    • Peters V., and Conrad R. Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soils. Appl. Environ. Microbiol. 61 (1995) 1673-1676
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1673-1676
    • Peters, V.1    Conrad, R.2
  • 63
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and Archaeal genomes
    • Philippot L. Denitrifying genes in bacterial and Archaeal genomes. Biochim. Biophys. Acta 1577 (2002) 355-376
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 355-376
    • Philippot, L.1
  • 64
    • 14644443587 scopus 로고    scopus 로고
    • Tracking nitrate reducers and denitrifiers in the environment
    • Philippot L. Tracking nitrate reducers and denitrifiers in the environment. Biochem. Soc. Trans. 33 (2005) 200-204
    • (2005) Biochem. Soc. Trans. , vol.33 , pp. 200-204
    • Philippot, L.1
  • 65
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz M.F., and Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64 (1998) 3724-3730
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 68
  • 70
    • 0035347175 scopus 로고    scopus 로고
    • Natural communities of novel archaea and bacteria growing in cold sulfurous springs with a string-of-pearls-like morphology
    • Rudolph C., Wanner G., and Huber R. Natural communities of novel archaea and bacteria growing in cold sulfurous springs with a string-of-pearls-like morphology. Appl. Environ. Microbiol. 67 (2001) 2336-2344
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2336-2344
    • Rudolph, C.1    Wanner, G.2    Huber, R.3
  • 71
    • 0032792809 scopus 로고    scopus 로고
    • Abundance and diversity of Archaea in heavy-metal-contaminated soils
    • Sandaa R.A., Enger O., and Torsvik V. Abundance and diversity of Archaea in heavy-metal-contaminated soils. Appl. Environ. Microbiol. 65 (1999) 3293-3297
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3293-3297
    • Sandaa, R.A.1    Enger, O.2    Torsvik, V.3
  • 73
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk M.O., Kelley D.S., Delaney J.R., and Baross J.A. Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl. Environ. Microbiol. 69 (2003) 3580-3592
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, J.A.4
  • 76
    • 33645227626 scopus 로고    scopus 로고
    • 16S rDNA directed PCR primers and detection of methanogens in the bovine rumen
    • Skillman L.C., Evans P.N., Strompl C., and Joblin K.N. 16S rDNA directed PCR primers and detection of methanogens in the bovine rumen. Lett. Appl. Microbiol. 42 (2006) 222-228
    • (2006) Lett. Appl. Microbiol. , vol.42 , pp. 222-228
    • Skillman, L.C.1    Evans, P.N.2    Strompl, C.3    Joblin, K.N.4
  • 77
    • 1642267395 scopus 로고    scopus 로고
    • Comparison of crenarchaeal consortia inhabiting the rhizosphere of diverse terrestrial plants with those in bulk soil in native environments
    • Sliwinski M.K., and Goodman R.M. Comparison of crenarchaeal consortia inhabiting the rhizosphere of diverse terrestrial plants with those in bulk soil in native environments. Appl. Environ. Microbiol. 70 (2004) 1821-1826
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1821-1826
    • Sliwinski, M.K.1    Goodman, R.M.2
  • 78
    • 1642296563 scopus 로고    scopus 로고
    • Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling
    • Sliwinski M.K., and Goodman R.M. Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling. Appl. Environ. Microbiol. 70 (2004) 1811-1820
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1811-1820
    • Sliwinski, M.K.1    Goodman, R.M.2
  • 79
    • 23844514156 scopus 로고    scopus 로고
    • Biodiversity and seasonal variation of the cyanobacterial assemblage in a rice paddy field in Fujian, China
    • Song T., Mårtensson L., Eriksson T., Zheng W., and Rasmussen U. Biodiversity and seasonal variation of the cyanobacterial assemblage in a rice paddy field in Fujian, China. FEMS Microbiol. Ecol. 54 (2005) 131-140
    • (2005) FEMS Microbiol. Ecol. , vol.54 , pp. 131-140
    • Song, T.1    Mårtensson, L.2    Eriksson, T.3    Zheng, W.4    Rasmussen, U.5
  • 80
    • 9244252034 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane and ammonium
    • Strous M., and Jetten M.S. Anaerobic oxidation of methane and ammonium. Annu. Rev. Microbiol. 58 (2004) 99-117
    • (2004) Annu. Rev. Microbiol. , vol.58 , pp. 99-117
    • Strous, M.1    Jetten, M.S.2
  • 81
    • 2542486472 scopus 로고    scopus 로고
    • The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester
    • Tang Y., Shigematsu T., Ikbal, Morimura S., and Kida K. The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester. Water Res. 38 (2004) 2537-2550
    • (2004) Water Res. , vol.38 , pp. 2537-2550
    • Tang, Y.1    Shigematsu, T.2    Ikbal3    Morimura, S.4    Kida, K.5
  • 82
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik V., Ovreas L., and Thingstad T.F. Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296 (2002) 1064-1066
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreas, L.2    Thingstad, T.F.3
  • 84
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch A.H., Leininger S., Kletzin A., Schuster S.C., Klenk H.P., and Schleper C. Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7 (2005) 1985-1995
    • (2005) Environ. Microbiol. , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.P.5    Schleper, C.6
  • 85
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Van de Peer Y., Chapelle S., and De Wachter R. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res. 24 (1996) 3381-3391
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3381-3391
    • Van de Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 86
    • 1042267966 scopus 로고    scopus 로고
    • Methanotrophic diversity in high arctic wetlands on the islands of Svalbard (Norway)-denaturing gradient gel electrophoresis analysis of soil DNA and enrichment cultures
    • Wartiainen I., Hestnes A.G., and Svenning M.M. Methanotrophic diversity in high arctic wetlands on the islands of Svalbard (Norway)-denaturing gradient gel electrophoresis analysis of soil DNA and enrichment cultures. Can. J. Microbiol. 49 (2003) 602-612
    • (2003) Can. J. Microbiol. , vol.49 , pp. 602-612
    • Wartiainen, I.1    Hestnes, A.G.2    Svenning, M.M.3
  • 87
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: the primary kingdoms
    • Woese C.R., and Fox G.E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. U. S. A. 74 (1977) 5088-5090
    • (1977) Proc. Natl. Acad. Sci. U. S. A. , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 88
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese C.R., Kandler O., and Wheelis M.L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U. S. A. 87 (1990) 4576-4579
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 89
    • 33644963973 scopus 로고    scopus 로고
    • Diversity and ubiquity of thermophilic methanogenic archaea in temperate anoxic soils
    • Wu X.L., Friedrich M.W., and Conrad R. Diversity and ubiquity of thermophilic methanogenic archaea in temperate anoxic soils. Environ. Microbiol. 8 (2006) 394-404
    • (2006) Environ. Microbiol. , vol.8 , pp. 394-404
    • Wu, X.L.1    Friedrich, M.W.2    Conrad, R.3
  • 90
    • 0033987792 scopus 로고    scopus 로고
    • Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
    • Yang C.H., and Crowley D.E. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66 (2000) 345-351
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 345-351
    • Yang, C.H.1    Crowley, D.E.2
  • 91
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: a cross-system comparison
    • Zehr J.P., Jenkins B.D., Short S.M., and Steward G.F. Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ. Microbiol. 5 (2003) 539-554
    • (2003) Environ. Microbiol. , vol.5 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4
  • 92
    • 0000253782 scopus 로고
    • Physiological ecology of methanogens
    • Ferry J.G. (Ed), Chapman Hall, Routledge
    • Zinder S.H. Physiological ecology of methanogens. In: Ferry J.G. (Ed). Methanogenesis (1993), Chapman Hall, Routledge 128-206
    • (1993) Methanogenesis , pp. 128-206
    • Zinder, S.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.