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Volumn 67, Issue 5, 2001, Pages 2336-2344

Natural Communities of Novel Archaea and Bacteria Growing in Cold Sulfurous Springs with a String-of-Pearls-Like Morphology

Author keywords

[No Author keywords available]

Indexed keywords

FRESH WATER; RIBOSOME DNA; RNA 16S; SULFUR;

EID: 0035347175     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.5.2336-2344.2001     Document Type: Article
Times cited : (81)

References (57)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0030779914 scopus 로고    scopus 로고
    • Application of microautoradiography for the study of substrate uptake by filamentous microorganisms in activated sludge
    • Andreasen, K. H., and P. H. Nielsen. 1997. Application of microautoradiography for the study of substrate uptake by filamentous microorganisms in activated sludge. Appl. Environ. Microbiol. 63:3662-3668.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3662-3668
    • Andreasen, K.H.1    Nielsen, P.H.2
  • 4
    • 0028343555 scopus 로고    scopus 로고
    • Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1996. Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 5
    • 0017874296 scopus 로고
    • Observations on the biology of Thiothris
    • Bland, J. A., and J. T. Staley. 1978. Observations on the biology of Thiothris. Arch. Microbiol. 117:79-87.
    • (1978) Arch. Microbiol. , vol.117 , pp. 79-87
    • Bland, J.A.1    Staley, J.T.2
  • 7
    • 0031680273 scopus 로고    scopus 로고
    • Role of Fusobacterium nucleatum and coaggregation in anaerobe survival in planktonic and biofilm oral microbial communities during aggregation
    • Bradshaw, D. J., P. D. Marsh, G. K. Watson, and C. Allison. 1998. Role of Fusobacterium nucleatum and coaggregation in anaerobe survival in planktonic and biofilm oral microbial communities during aggregation. Infect. Immun. 66:4724-4732.
    • (1998) Infect. Immun. , vol.66 , pp. 4724-4732
    • Bradshaw, D.J.1    Marsh, P.D.2    Watson, G.K.3    Allison, C.4
  • 8
    • 0042992107 scopus 로고
    • Flora und Vegetation der ältesten Schutzgebiete im Umkreis von Regensburg
    • Bresinsky, A. 1991. Flora und Vegetation der ältesten Schutzgebiete im Umkreis von Regensburg. Hoppea, Denkschr. Bot. Regensb. Ges. 50:121-150.
    • (1991) Hoppea, Denkschr. Bot. Regensb. Ges. , vol.50 , pp. 121-150
    • Bresinsky, A.1
  • 9
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., T. J. Dull, D. D. Sleeter, and H. F. Noller. 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148:107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 11
    • 0030610214 scopus 로고    scopus 로고
    • Reclassification of the crenarchaeal orders and families in accordance with 16S rRNA sequence data
    • Burggraf, S., H. Huber, and K. O. Stetter. 1997. Reclassification of the crenarchaeal orders and families in accordance with 16S rRNA sequence data. Int. J. Syst. Bacteriol. 47:657-660.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 657-660
    • Burggraf, S.1    Huber, H.2    Stetter, K.O.3
  • 12
    • 17544390961 scopus 로고    scopus 로고
    • Identification of and spatiotemporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis
    • Casamayor, E. O., H. Schäfer, L. Baneras, C. Pedrós-Alió, and G. Muyzer. 2000. Identification of and spatiotemporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 66:499-508.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 499-508
    • Casamayor, E.O.1    Schäfer, H.2    Baneras, L.3    Pedrós-Alió, C.4    Muyzer, G.5
  • 14
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 15
    • 0032729451 scopus 로고    scopus 로고
    • Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization
    • DeLong, E. F., L. T. Taylor, T. L. Marsh, and C. M. Preston. 1999. Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Appl. Environ. Microbiol. 65:5554-5563.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5554-5563
    • Delong, E.F.1    Taylor, L.T.2    Marsh, T.L.3    Preston, C.M.4
  • 16
    • 0032568439 scopus 로고    scopus 로고
    • Microbial genomes opened up
    • Doolittle, R. F. 1997. Microbial genomes opened up. Nature 392:339-342.
    • (1997) Nature , vol.392 , pp. 339-342
    • Doolittle, R.F.1
  • 17
    • 0032888598 scopus 로고    scopus 로고
    • Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit Deep, Red Sea
    • Eder, W., W. Ludwig, and R. Huber. 1999. Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit Deep, Red Sea. Arch. Microbiol. 172:213-218.
    • (1999) Arch. Microbiol. , vol.172 , pp. 213-218
    • Eder, W.1    Ludwig, W.2    Huber, R.3
  • 18
    • 0026760934 scopus 로고
    • The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont
    • Embley, T. M., B. J. Finlay, R. H. Thomas, and P. L. Dyal. 1992. The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont. J. Gen. Microbiol. 138:1479-1487.
    • (1992) J. Gen. Microbiol. , vol.138 , pp. 1479-1487
    • Embley, T.M.1    Finlay, B.J.2    Thomas, R.H.3    Dyal, P.L.4
  • 19
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 20
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Croßkopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 64:4983-4989.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4983-4989
    • Croßkopf, R.1    Stubner, S.2    Liesack, W.3
  • 21
    • 0032720669 scopus 로고    scopus 로고
    • Biofilm formation in hyperthermophilic archaea
    • Hartell, P. L., J. Millstein, and C. LaPaglia. 1999. Biofilm formation in hyperthermophilic archaea. Methods Enzymol. 310:335-349.
    • (1999) Methods Enzymol. , vol.310 , pp. 335-349
    • Hartell, P.L.1    Millstein, J.2    Lapaglia, C.3
  • 23
    • 0030646652 scopus 로고    scopus 로고
    • A microoptode array for fine-scale measurement of oxygen distribution
    • Holst, G., R. N. Glud, M. Kühl, and I. Klimant. 1997. A microoptode array for fine-scale measurement of oxygen distribution. Sensors Actuators B 38-39:122-129.
    • (1997) Sensors Actuators B , vol.38-39 , pp. 122-129
    • Holst, G.1    Glud, R.N.2    Kühl, M.3    Klimant, I.4
  • 24
    • 0029061139 scopus 로고
    • Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
    • Huber, R., S. Burggraf, T. Mayer, S. M. Barns, P. Rossnagel, and K. O. Stetter, 1995. Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis. Nature 376:57-58.
    • (1995) Nature , vol.376 , pp. 57-58
    • Huber, R.1    Burggraf, S.2    Mayer, T.3    Barns, S.M.4    Rossnagel, P.5    Stetter, K.O.6
  • 25
    • 0031685977 scopus 로고    scopus 로고
    • Thermocrinis ruber gen. nov., sp. nov., a pink-filament-forming hyperthermophilic bacterium isolated from Yellowstone National Park
    • Huber, R., W. Eder, S. Heldwein, G. Wanner, H. Huber, R. Rachel, and K. O. Stetter. 1998. Thermocrinis ruber gen. nov., sp. nov., a pink-filament-forming hyperthermophilic bacterium isolated from Yellowstone National Park. Appl. Environ. Microbiol. 64:3576-3583.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3576-3583
    • Huber, R.1    Eder, W.2    Heldwein, S.3    Wanner, G.4    Huber, H.5    Rachel, R.6    Stetter, K.O.7
  • 26
    • 0001092661 scopus 로고    scopus 로고
    • Die Laserpinzette als Basis für Einzelzellkultivierungen
    • Huber, R. 1999. Die Laserpinzette als Basis für Einzelzellkultivierungen. BIOspektrum 5:289-291.
    • (1999) BIOspektrum , vol.5 , pp. 289-291
    • Huber, R.1
  • 27
    • 0033768088 scopus 로고    scopus 로고
    • Towards the ecology of hyperthermophiles: Biotopes, new isolation strategies and novel metabolic properties
    • Huber, R., H. Huber, and K. O. Stetter. 2000. Towards the ecology of hyperthermophiles: biotopes, new isolation strategies and novel metabolic properties. FEMS Microbiol. Rev. 24:615-623.
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 615-623
    • Huber, R.1    Huber, H.2    Stetter, K.O.3
  • 28
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens, G., K. Lindström, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindström, K.2    Saano, A.3
  • 31
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, Chichester, England
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, England.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 32
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiology - A new tool for structure-function analyses in microbial ecology
    • Lee, N., P. H. Nielsen, K. H. Andreasen, S. Juretschko, J. L. Nielsen, K.-H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiology - a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielsen, J.L.5    Schleifer, K.-H.6    Wagner, M.7
  • 33
    • 0001815418 scopus 로고
    • Sequence databases (3.3.5)
    • A. D. L. Akkermans, J. D. Van Elsas, and F. J. De Bruijn (ed.), Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Ludwig, W. 1995. Sequence databases (3.3.5), p. 1-22. In A. D. L. Akkermans, J. D. Van Elsas, and F. J. De Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-22
    • Ludwig, W.1
  • 38
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
    • Massana, R., A. E. Murray, C. M. Preston, and E. F. DeLong. 1998. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63:50-56.
    • (1998) Appl. Environ. Microbiol. , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    DeLong, E.F.4
  • 39
    • 0028902592 scopus 로고
    • Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder
    • McInerney, J. O., M. Wilkinson, J. W. Patching, T. M. Embley, and R. Powell. 1995. Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder. Appl. Environ. Microbiol. 61: 1646-1678.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1646-1678
    • McInerney, J.O.1    Wilkinson, M.2    Patching, J.W.3    Embley, T.M.4    Powell, R.5
  • 40
    • 0030734675 scopus 로고    scopus 로고
    • Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea
    • McInerney, J. O., M. Mullarkey, M. E. Wernecke, and R. Powell. 1997. Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea. Proc. R. Soc. Lond. B 264:1669.
    • (1997) Proc. R. Soc. Lond. B , vol.264 , pp. 1669
    • McInerney, J.O.1    Mullarkey, M.2    Wernecke, M.E.3    Powell, R.4
  • 41
    • 0031814110 scopus 로고    scopus 로고
    • Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island. Antarctica
    • Murray, A. E., C. M. Preston, R. Massana, L. T. Taylor, A. Blakis, K. Wu, and E. F. DeLong. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island. Antarctica. Appl. Environ. Microbiol. 64:2585-2595.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2585-2595
    • Murray, A.E.1    Preston, C.M.2    Massana, R.3    Taylor, L.T.4    Blakis, A.5    Wu, K.6    DeLong, E.F.7
  • 44
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Pace, N. R., D. A. Stahl, D. J. Lane, and G. J. Olsen. 1986. The analysis of natural microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9:1-55.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 45
    • 15844365305 scopus 로고    scopus 로고
    • A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.
    • Preston, C. M., K. Y. Wu, T. F. Molinski, and E. F. DeLong. 1996. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc. Natl. Acad. Sci. USA 93:6241-6246.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6241-6246
    • Preston, C.M.1    Wu, K.Y.2    Molinski, T.F.3    DeLong, E.F.4
  • 46
    • 0000224938 scopus 로고
    • Microelectrodes: Their use in microbial ecology
    • Revsbech, N. P., and B. B. Jorgensen. 1986. Microelectrodes: their use in microbial ecology. Adv. Microb. Ecol. 9:293-352.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 293-352
    • Revsbech, N.P.1    Jorgensen, B.B.2
  • 47
    • 0031033384 scopus 로고    scopus 로고
    • Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
    • Schleper, C., W. Holben, and H. P. Klenk. 1997. Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl. Environ. Microbiol. 63:321-323.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 321-323
    • Schleper, C.1    Holben, W.2    Klenk, H.P.3
  • 48
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons. Chichester, England
    • Stahl, D. A., and R. Amann. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons. Chichester, England.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 49
    • 0033066726 scopus 로고    scopus 로고
    • Extremophiles and their adaptation to hot environments
    • Stetter, K. O. 1999. Extremophiles and their adaptation to hot environments. FEBS Lett. 452:22-25.
    • (1999) FEBS Lett. , vol.452 , pp. 22-25
    • Stetter, K.O.1
  • 50
    • 0042992106 scopus 로고    scopus 로고
    • Microorganisms in high-temperature sulfur environments
    • Nature Publishing Group. [Online.]
    • Stetter, K. O. 2000. Microorganisms in high-temperature sulfur environments. In Embryonic encyclopedia of life sciences. Nature Publishing Group. [Online.] http://www.els.net.
    • (2000) Embryonic Encyclopedia of Life Sciences
    • Stetter, K.O.1
  • 51
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • Ueda, T., Y. Suga, and T. Matsuguchi. 1995. Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur. J. Soil Sci. 46:415-421.
    • (1995) Eur. J. Soil Sci. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 53
    • 0032054378 scopus 로고    scopus 로고
    • Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments
    • Vetriani, C., A.-L. Reysenbach, and J. Doré. 1998. Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments. FEMS Microbiol. Lett. 161:83-88.
    • (1998) FEMS Microbiol. Lett. , vol.161 , pp. 83-88
    • Vetriani, C.1    Reysenbach, A.-L.2    Doré, J.3
  • 54
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
    • Vetriani, C., H. W. Jannasch, B. J. MacGregor, A. D. Stahl, and A.-L. Reysenbach. 1999. Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments. Appl. Environ. Microbiol. 65:4375-4384.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, A.D.4    Reysenbach, A.-L.5
  • 56
    • 0034015354 scopus 로고    scopus 로고
    • Biofilm, city of microbes
    • Watnick, P., and R. Kolter. 2000. Biofilm, city of microbes. J. Bacteriol. 182:2675-2679.
    • (2000) J. Bacteriol. , vol.182 , pp. 2675-2679
    • Watnick, P.1    Kolter, R.2
  • 57
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria and Eucarya
    • Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


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