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Volumn 19, Issue 12, 2003, Pages 1461-1468

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; RNA 16S;

EID: 0041386130     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg200     Document Type: Article
Times cited : (99)

References (22)
  • 2
    • 0036682224 scopus 로고    scopus 로고
    • PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
    • Ashelford,K.E., Weightman,A.J. and Fry,J.C. (2002) PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res., 30, 3481-3489.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3481-3489
    • Ashelford, K.E.1    Weightman, A.J.2    Fry, J.C.3
  • 3
    • 0032703998 scopus 로고    scopus 로고
    • d2uster: A validated method for clustering EST and full-length cDNA sequences
    • Burke,J., Davison,D. and Hide,W. (1999) d2uster: a validated method for clustering EST and full-length cDNA sequences. Genome Res., 9, 1135-1142.
    • (1999) Genome Res. , vol.9 , pp. 1135-1142
    • Burke, J.1    Davison, D.2    Hide, W.3
  • 5
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka,M.A., Hugenholtz,P., Haack,S.K. and Pace,N.R. (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol., 64, 3869-3877.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 7
    • 0035513694 scopus 로고    scopus 로고
    • Secondary intracellular symbiotic bacteria in aphids of the genus Yamatocallis (Homoptera:Aphididae: Drepanosiphinae)
    • Fukatsu,T. (2001) Secondary intracellular symbiotic bacteria in aphids of the genus Yamatocallis (Homoptera:Aphididae: Drepanosiphinae). Appl. Environ. Microbiol., 67, 5315-5320.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5315-5320
    • Fukatsu, T.1
  • 8
    • 0031762837 scopus 로고    scopus 로고
    • Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence
    • Gerstein,M. (1998) Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence. Bioinformatics, 14, 707-714.
    • (1998) Bioinformatics , vol.14 , pp. 707-714
    • Gerstein, M.1
  • 9
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz,P., Goebel,B.M. and Pace,N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol., 180, 4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 10
    • 0043064021 scopus 로고    scopus 로고
    • Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
    • Papers. in Press
    • Hugenholtz,P. and Huber,T. (2002) Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. Int. J. Sys. Evol. Microbiol. Papers. in Press, http://www.sgm.ac.uk/IJSEM/PiP/ijsem02441.pdf
    • (2002) Int. J. Sys. Evol. Microbiol.
    • Hugenholtz, P.1    Huber, T.2
  • 12
    • 0035210154 scopus 로고    scopus 로고
    • Optimization of an oligonucleotide microchip for microbial identification studies: A non-equilibrium dissociation approach
    • Liu,W.T., Mirzabekov,A.D. and Stahl,D.A. (2001) Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ. Microbiol., 3, 619-629.
    • (2001) Environ. Microbiol. , vol.3 , pp. 619-629
    • Liu, W.T.1    Mirzabekov, A.D.2    Stahl, D.A.3
  • 13
    • 0037258055 scopus 로고    scopus 로고
    • ProbeBase - An online resource for rRNA-targeted oligonucleotide probes
    • Loy,A., Horn,M. and Wagner,M. (2003) probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res., 31, 514-516.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 514-516
    • Loy, A.1    Horn, M.2    Wagner, M.3
  • 15
    • 0036843687 scopus 로고    scopus 로고
    • Escherichia coli gene expression responsive to levels of the response regulator EvgA
    • Masuda,N. and Church.G.M. (2002) Escherichia coli gene expression responsive to levels of the response regulator EvgA. J. Bacteriol., 184, 6225-6234.
    • (2002) J. Bacteriol. , vol.184 , pp. 6225-6234
    • Masuda, N.1    Church, G.M.2
  • 16
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 18
    • 0025045135 scopus 로고
    • Amplification of bacteriol 16S ribosomal DNA with polymerase chain reaction
    • [published erratum appears in J. Clin. Microbiol. 1991 Mar; 29(3): 666]
    • Wilson,K.H., Blitchington,R.B. and Greene,R.C. (1990) Amplification of bacteriol 16S ribosomal DNA with polymerase chain reaction [published erratum appears in J. Clin. Microbiol. 1991 Mar; 29(3): 666]. J. Clin. Microbiol., 28, 1942-1946.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1942-1946
    • Wilson, K.H.1    Blitchington, R.B.2    Greene, R.C.3
  • 22
    • 0036184691 scopus 로고    scopus 로고
    • Identification of chatacteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset
    • Zhang,Z., Willson,R.C. and Fox,G.E. (2002) Identification of chatacteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset. Bioinformatics, 18, 244-250.
    • (2002) Bioinformatics , vol.18 , pp. 244-250
    • Zhang, Z.1    Willson, R.C.2    Fox, G.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.