-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 15, 403-410.
-
(1990)
J. Mol. Biol.
, vol.15
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0036682224
-
PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
-
Ashelford,K.E., Weightman,A.J. and Fry,J.C. (2002) PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res., 30, 3481-3489.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3481-3489
-
-
Ashelford, K.E.1
Weightman, A.J.2
Fry, J.C.3
-
3
-
-
0032703998
-
d2uster: A validated method for clustering EST and full-length cDNA sequences
-
Burke,J., Davison,D. and Hide,W. (1999) d2uster: a validated method for clustering EST and full-length cDNA sequences. Genome Res., 9, 1135-1142.
-
(1999)
Genome Res.
, vol.9
, pp. 1135-1142
-
-
Burke, J.1
Davison, D.2
Hide, W.3
-
4
-
-
2942571539
-
The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone,J.J., Subramanian,S., Schnare,M.N., Collett,J.R., D'Souza,L.M., Du,Y., Feng,B., Lin,N., Madabusi,L.V. and Müller,K.M. et al. (2002) The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics, 3, 2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Müller, K.M.10
-
5
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
-
Dojka,M.A., Hugenholtz,P., Haack,S.K. and Pace,N.R. (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol., 64, 3869-3877.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
6
-
-
0018974560
-
The phylogeny of prokaryotes
-
Fox,G.E., Stackebrandt,E., Hespell,R.B., Gibson,J., Maniloff,J., Dyer,T.A., Wolfe,R.S., Balch,W.E., Tanner,R.S., Magrum,L.J. et al. (1980) The phylogeny of prokaryotes. Science, 209, 457-463.
-
(1980)
Science
, vol.209
, pp. 457-463
-
-
Fox, G.E.1
Stackebrandt, E.2
Hespell, R.B.3
Gibson, J.4
Maniloff, J.5
Dyer, T.A.6
Wolfe, R.S.7
Balch, W.E.8
Tanner, R.S.9
Magrum, L.J.10
-
7
-
-
0035513694
-
Secondary intracellular symbiotic bacteria in aphids of the genus Yamatocallis (Homoptera:Aphididae: Drepanosiphinae)
-
Fukatsu,T. (2001) Secondary intracellular symbiotic bacteria in aphids of the genus Yamatocallis (Homoptera:Aphididae: Drepanosiphinae). Appl. Environ. Microbiol., 67, 5315-5320.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5315-5320
-
-
Fukatsu, T.1
-
8
-
-
0031762837
-
Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence
-
Gerstein,M. (1998) Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence. Bioinformatics, 14, 707-714.
-
(1998)
Bioinformatics
, vol.14
, pp. 707-714
-
-
Gerstein, M.1
-
9
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz,P., Goebel,B.M. and Pace,N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol., 180, 4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
10
-
-
0043064021
-
Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
-
Papers. in Press
-
Hugenholtz,P. and Huber,T. (2002) Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. Int. J. Sys. Evol. Microbiol. Papers. in Press, http://www.sgm.ac.uk/IJSEM/PiP/ijsem02441.pdf
-
(2002)
Int. J. Sys. Evol. Microbiol.
-
-
Hugenholtz, P.1
Huber, T.2
-
11
-
-
0035173421
-
rrndb: The ribosomal RNA operon copy number database
-
Klappenbach,J.A., Saxman,P.R., Cole,J.R. and Schmidt,T.M. (2001) rrndb: the ribosomal RNA operon copy number database. Nucleic Acids Res., 29, 181-184.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 181-184
-
-
Klappenbach, J.A.1
Saxman, P.R.2
Cole, J.R.3
Schmidt, T.M.4
-
12
-
-
0035210154
-
Optimization of an oligonucleotide microchip for microbial identification studies: A non-equilibrium dissociation approach
-
Liu,W.T., Mirzabekov,A.D. and Stahl,D.A. (2001) Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ. Microbiol., 3, 619-629.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 619-629
-
-
Liu, W.T.1
Mirzabekov, A.D.2
Stahl, D.A.3
-
13
-
-
0037258055
-
ProbeBase - An online resource for rRNA-targeted oligonucleotide probes
-
Loy,A., Horn,M. and Wagner,M. (2003) probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res., 31, 514-516.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 514-516
-
-
Loy, A.1
Horn, M.2
Wagner, M.3
-
14
-
-
0035175274
-
The RDP-II (Ribosomal Database Project)
-
Maidak,B.L., Cole,J.R., Lilburn,T.G., Parker,Jr,C.T., Saxman,P.R., Farris,R.J., Garrity,G.M., Olsen,G.J., Schmidt,T.M. and Tiedje,J.M. (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res., 29, 173-174.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker C.T., Jr.4
Saxman, P.R.5
Farris, R.J.6
Garrity, G.M.7
Olsen, G.J.8
Schmidt, T.M.9
Tiedje, J.M.10
-
15
-
-
0036843687
-
Escherichia coli gene expression responsive to levels of the response regulator EvgA
-
Masuda,N. and Church.G.M. (2002) Escherichia coli gene expression responsive to levels of the response regulator EvgA. J. Bacteriol., 184, 6225-6234.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6225-6234
-
-
Masuda, N.1
Church, G.M.2
-
16
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
17
-
-
0026067797
-
16S ribosomal. DNA amplification for phylogenetic study
-
Weisburg,W.G., Barns,S.M., Pelletier,D.A. and Lane,D.J. (1991) 16S ribosomal. DNA amplification for phylogenetic study. J. Bacteriol., 173, 697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
18
-
-
0025045135
-
Amplification of bacteriol 16S ribosomal DNA with polymerase chain reaction
-
[published erratum appears in J. Clin. Microbiol. 1991 Mar; 29(3): 666]
-
Wilson,K.H., Blitchington,R.B. and Greene,R.C. (1990) Amplification of bacteriol 16S ribosomal DNA with polymerase chain reaction [published erratum appears in J. Clin. Microbiol. 1991 Mar; 29(3): 666]. J. Clin. Microbiol., 28, 1942-1946.
-
(1990)
J. Clin. Microbiol.
, vol.28
, pp. 1942-1946
-
-
Wilson, K.H.1
Blitchington, R.B.2
Greene, R.C.3
-
19
-
-
0036245011
-
High-density microarray of small-subunit ribosomal DNA probes
-
Wilson,K.H., Wilson,W.J., Radosevich,J.L., DeSantis,T.Z., Viswanathan,V.S., Kuczmarski,T.A. and Andersen,G.L. (2002) High-density microarray of small-subunit ribosomal DNA probes. Appl. Environ. Microbiol., 68, 2535-2541.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2535-2541
-
-
Wilson, K.H.1
Wilson, W.J.2
Radosevich, J.L.3
DeSantis, T.Z.4
Viswanathan, V.S.5
Kuczmarski, T.A.6
Andersen, G.L.7
-
20
-
-
0016638221
-
Conservation of primary structure in 16S ribosomal RNA
-
Woese,C.R., Fox,G.E., Zablen,L., Uchida,T., Bonen,L., Pechman,K., Lewis,B.J. and Stahl,D. (1975) Conservation of primary structure in 16S ribosomal RNA. Nature, 254, 83-86.
-
(1975)
Nature
, vol.254
, pp. 83-86
-
-
Woese, C.R.1
Fox, G.E.2
Zablen, L.3
Uchida, T.4
Bonen, L.5
Pechman, K.6
Lewis, B.J.7
Stahl, D.8
-
21
-
-
0036081020
-
The European database on small subunit ribosomal RNA
-
Wuyts,J., Van de Peer,Y, Winkelmans,T. and De Wachter,R. (2002) The European database on small subunit ribosomal RNA. Nucleic Acids Res., 30, 183-185.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 183-185
-
-
Wuyts, J.1
Van de Peer, Y.2
Winkelmans, T.3
De Wachter, R.4
-
22
-
-
0036184691
-
Identification of chatacteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset
-
Zhang,Z., Willson,R.C. and Fox,G.E. (2002) Identification of chatacteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset. Bioinformatics, 18, 244-250.
-
(2002)
Bioinformatics
, vol.18
, pp. 244-250
-
-
Zhang, Z.1
Willson, R.C.2
Fox, G.E.3
|