-
2
-
-
0034572478
-
Direct proof for the presence and expression of two 5% different 16S rRNA genes in individual cells of Haloarcula marismortui
-
Amann G., Stetter K. O., Llobet-Brossa E., Amann R., Anton J. Direct proof for the presence and expression of two 5% different 16S rRNA genes in individual cells of Haloarcula marismortui. Extremophiles. 4:2000;373-376.
-
(2000)
Extremophiles
, vol.4
, pp. 373-376
-
-
Amann, G.1
Stetter, K.O.2
Llobet-Brossa, E.3
Amann, R.4
Anton, J.5
-
3
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
Aravind L., Koonin E. V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 27:1999;4658-4670.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
4
-
-
0031736121
-
Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
-
Aravind L., Tatusov R. L., Wolf Y. I., Walker D. R., Koonin E. V. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 14:1998;442-444.
-
(1998)
Trends Genet.
, vol.14
, pp. 442-444
-
-
Aravind, L.1
Tatusov, R.L.2
Wolf, Y.I.3
Walker, D.R.4
Koonin, E.V.5
-
5
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA. 93:1996;9188-9193.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
6
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Beja O., Spudich E. N., Spudich J. L., Leclerc M., DeLong E. F. Proteorhodopsin phototrophy in the ocean. Nature. 411:2001;786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Beja, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
Delong, E.F.5
-
7
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell S. D., Jackson S. P. Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4:2001;208-213.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
8
-
-
0344505233
-
Isolation of new plasmids from hyperthermophilic Archaea of the order Thermococcales
-
Benbouzid-Rollet N., Lopez-Garcia P., Watrin L., Erauso G., Prieur D., Forterre P. Isolation of new plasmids from hyperthermophilic Archaea of the order Thermococcales. Res. Microbiol. 148:1997;767-775.
-
(1997)
Res. Microbiol.
, vol.148
, pp. 767-775
-
-
Benbouzid-Rollet, N.1
Lopez-Garcia, P.2
Watrin, L.3
Erauso, G.4
Prieur, D.5
Forterre, P.6
-
9
-
-
0034212268
-
Chromosome replication, nucleoid segregation and cell division in archaea
-
Bernander R. Chromosome replication, nucleoid segregation and cell division in archaea. Trends Microbiol. 8:2000;278-283.
-
(2000)
Trends Microbiol.
, vol.8
, pp. 278-283
-
-
Bernander, R.1
-
12
-
-
0034565944
-
The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome
-
Brochier C., Philippe H., Moreira D. The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome. Trends Genet. 16:2000;529-533.
-
(2000)
Trends Genet.
, vol.16
, pp. 529-533
-
-
Brochier, C.1
Philippe, H.2
Moreira, D.3
-
13
-
-
0034942865
-
Universal trees based on large combined protein sequence data sets
-
Brown J. R., Douady C. J., Italia M. J., Marshall W. E., Stanhope M. J. Universal trees based on large combined protein sequence data sets. Nat. Genet. 28:2001;281-285.
-
(2001)
Nat. Genet.
, vol.28
, pp. 281-285
-
-
Brown, J.R.1
Douady, C.J.2
Italia, M.J.3
Marshall, W.E.4
Stanhope, M.J.5
-
14
-
-
0037050279
-
Mobile elements in archaeal genomes
-
Brügger K., Redder P., She Q., Confalonieri F., Zivanovic Y., Garrett R. A. Mobile elements in archaeal genomes. FEMS Microbiol. Lett. 206:2002;131-141.
-
(2002)
FEMS Microbiol. Lett.
, vol.206
, pp. 131-141
-
-
Brügger, K.1
Redder, P.2
She, Q.3
Confalonieri, F.4
Zivanovic, Y.5
Garrett, R.A.6
-
15
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith T. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 52:2002;7-76.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
16
-
-
0037122793
-
A hydrogen-based subsurface microbial community dominated by methanogens
-
Chapelle F. H., O'Neill K., Bradley P. M., Methe B. A., Ciufo S. A., Knobel L. L., Lovley D. R. A hydrogen-based subsurface microbial community dominated by methanogens. Nature. 415:2002;312-315.
-
(2002)
Nature
, vol.415
, pp. 312-315
-
-
Chapelle, F.H.1
O'Neill, K.2
Bradley, P.M.3
Methe, B.A.4
Ciufo, S.A.5
Knobel, L.L.6
Lovley, D.R.7
-
17
-
-
0028345358
-
Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria
-
Charbonnier F., Forterre P. Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria. J. Bacteriol. 176:1994;1251-1259.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1251-1259
-
-
Charbonnier, F.1
Forterre, P.2
-
19
-
-
0033636657
-
Evidence of recent lateral gene transfer among hyperthermophilic archaea
-
Diruggiero J., Dunn D., Maeder D. L., Holley-Shanks R., Chatard J., Horlacher R., Robb F. T., Boos W., Weiss R. B. Evidence of recent lateral gene transfer among hyperthermophilic archaea. Mol. Microbiol. 38:2000;684-693.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 684-693
-
-
Diruggiero, J.1
Dunn, D.2
Maeder, D.L.3
Holley-Shanks, R.4
Chatard, J.5
Horlacher, R.6
Robb, F.T.7
Boos, W.8
Weiss, R.B.9
-
20
-
-
0031587829
-
Archaea and the origin(s) of DNA replication proteins
-
Edgell D. R., Doolittle W. F. Archaea and the origin(s) of DNA replication proteins. Cell. 89:1997;995-998.
-
(1997)
Cell
, vol.89
, pp. 995-998
-
-
Edgell, D.R.1
Doolittle, W.F.2
-
21
-
-
0033517997
-
Lessons from the Aeropyrum pernix genome
-
Faguy D. M., Doolittle W. F. Lessons from the Aeropyrum pernix genome. Curr. Biol. 9:1999;R883-R886.
-
(1999)
Curr. Biol.
, vol.9
-
-
Faguy, D.M.1
Doolittle, W.F.2
-
22
-
-
0034191993
-
Horizontal transfer of catalase-peroxidase genes between archaea and pathogenic bacteria
-
Faguy D. M., Doolittle W. F. Horizontal transfer of catalase-peroxidase genes between archaea and pathogenic bacteria. Trends Genet. 16:2000;196-197.
-
(2000)
Trends Genet.
, vol.16
, pp. 196-197
-
-
Faguy, D.M.1
Doolittle, W.F.2
-
23
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:1978;401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
24
-
-
0036107982
-
Evolution of DNA polymerase families: Evidence for multiple gene exchange between cellular and viral proteins
-
Filée J., Forterre P., Laurent J. Evolution of DNA polymerase families: Evidence for multiple gene exchange between cellular and viral proteins. J. Mol. Evol. 2002.
-
(2002)
J. Mol. Evol.
-
-
Filée, J.1
Forterre, P.2
Laurent, J.3
-
25
-
-
0033231209
-
Whole genome-based phylogenetic analysis of free-living microorganisms
-
Fitz-Gibbon S. T., House C. H. Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res. 27:1999;4218-4222.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4218-4222
-
-
Fitz-Gibbon, S.T.1
House, C.H.2
-
26
-
-
0031445864
-
Archaea: What can we learn from their sequences?
-
Forterre P. Archaea: What can we learn from their sequences? Curr. Opin. Genet. Dev. 7:1997;764-770.
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 764-770
-
-
Forterre, P.1
-
27
-
-
0032810166
-
Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins
-
Forterre P. Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins. Mol. Microbiol. 33:1999;457-465.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 457-465
-
-
Forterre, P.1
-
28
-
-
0036574857
-
A hot story from comparative genomic: Reverse gyrase as the only protein specific for hyperthermophiles
-
Forterre P. A hot story from comparative genomic: Reverse gyrase as the only protein specific for hyperthermophiles. Trends Genet. 18:2002;236-238.
-
(2002)
Trends Genet.
, vol.18
, pp. 236-238
-
-
Forterre, P.1
-
29
-
-
0034175943
-
Reverse gyrase from hyperthermophiles: Probable transfer of a thermoadaptation trait from archaea to bacteria
-
Forterre P., Bouthier De La Tour C., Philippe H., Duguet M. Reverse gyrase from hyperthermophiles: Probable transfer of a thermoadaptation trait from archaea to bacteria. Trends Genet. 16:2000;152-154.
-
(2000)
Trends Genet.
, vol.16
, pp. 152-154
-
-
Forterre, P.1
Bouthier De La Tour, C.2
Philippe, H.3
Duguet, M.4
-
30
-
-
0033214077
-
Where is the root of the universal tree of life?
-
Forterre P., Philippe H. Where is the root of the universal tree of life? BioEssays. 21:1999;871-879.
-
(1999)
BioEssays
, vol.21
, pp. 871-879
-
-
Forterre, P.1
Philippe, H.2
-
31
-
-
0030876477
-
Methanogenium frigidum sp. nov., a psychrophilic, H2-using methanogen from Ace Lake, Antarctica
-
Franzmann P. D., Liu Y., Balkwill D. L., Aldrich H. C., Conway de Macario E., Boone D. R. Methanogenium frigidum sp. nov., a psychrophilic, H2-using methanogen from Ace Lake, Antarctica. Int. J. Syst. Bacteriol. 47:1997;1068-1072.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 1068-1072
-
-
Franzmann, P.D.1
Liu, Y.2
Balkwill, D.L.3
Aldrich, H.C.4
Conway De MacArio, E.5
Boone, D.R.6
-
32
-
-
0033534584
-
A nonhyperthermophilic common ancestor to extant life forms
-
Galtier N., Tourasse N., Gouy M. A nonhyperthermophilic common ancestor to extant life forms. Sciences. 283:1999;220-221.
-
(1999)
Sciences
, vol.283
, pp. 220-221
-
-
Galtier, N.1
Tourasse, N.2
Gouy, M.3
-
33
-
-
0033752775
-
About the last common ancestor, the universal life-tree and lateral gene transfer: A reappraisal
-
Glansdorff N. About the last common ancestor, the universal life-tree and lateral gene transfer: A reappraisal. Mol. Microbiol. 38:2000;177-185.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 177-185
-
-
Glansdorff, N.1
-
34
-
-
0032956536
-
Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein
-
Gribaldo S., Lumia V., Creti R., de Macario E. C., Sanangelantoni A., Cammarano P. Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein. J. Bacteriol. 181:1999;434-443.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 434-443
-
-
Gribaldo, S.1
Lumia, V.2
Creti, R.3
De MacArio, E.C.4
Sanangelantoni, A.5
Cammarano, P.6
-
36
-
-
0031880993
-
What are archaebacteria: Life's third domain or monoderm prokaryotes related to Gram-positive bacteria? a new proposal for the classification of prokaryotic organisms
-
Gupta R. S. What are archaebacteria: life's third domain or monoderm prokaryotes related to Gram-positive bacteria? A new proposal for the classification of prokaryotic organisms. Mol. Microbiol. 229:1998;695-708.
-
(1998)
Mol. Microbiol.
, vol.229
, pp. 695-708
-
-
Gupta, R.S.1
-
37
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature. 417:2002;63-67.
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
38
-
-
0033768088
-
Towards the ecology of hyperthermophiles: Biotopes, new isolation strategies and novel metabolic properties
-
Huber R., Huber H., Stetter K. O. Towards the ecology of hyperthermophiles: Biotopes, new isolation strategies and novel metabolic properties. FEMS Microbiol. Rev. 24:2000;615-623.
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 615-623
-
-
Huber, R.1
Huber, H.2
Stetter, K.O.3
-
40
-
-
0000298267
-
Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes
-
Huynen M., Snel B., Bork P. Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes. Science. 286:1999;1443.
-
(1999)
Science
, vol.286
, pp. 1443
-
-
Huynen, M.1
Snel, B.2
Bork, P.3
-
41
-
-
0033616714
-
Horizontal gene transfer among genomes: The complexity hypothesis
-
Jain R., Rivera M. C., Lake J. A. Horizontal gene transfer among genomes: The complexity hypothesis. Proc. Natl. Acad. Sci. USA. 96:1999;3801-3806.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3801-3806
-
-
Jain, R.1
Rivera, M.C.2
Lake, J.A.3
-
42
-
-
0031945225
-
Cell wall polymers in Archaea (Archaebacteria)
-
Kandler O., Konig H. Cell wall polymers in Archaea (Archaebacteria). Cell Mol. Life Sci. 54:1998;305-308.
-
(1998)
Cell Mol. Life Sci.
, vol.54
, pp. 305-308
-
-
Kandler, O.1
Konig, H.2
-
43
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner M. B., DeLong E. F., Karl D. M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature. 409:2001;507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
Delong, E.F.2
Karl, D.M.3
-
44
-
-
77956822726
-
Membrane lipids of Archaea
-
M. Kates, D. J. Kushnen, Matheson A. T. Amsterdam: Elsevier
-
Kates M. Membrane lipids of Archaea. Kates M., Kushnen D. J., Matheson A. T. The Biochemistry of Archaea (Archaebacteria). 1993;261-295 Elsevier, Amsterdam.
-
(1993)
The Biochemistry of Archaea (Archaebacteria)
, pp. 261-295
-
-
Kates, M.1
-
45
-
-
0034767491
-
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
-
Kennedy S. P., Ng W. V., Salzberg S. L., Hood L., DasSarma S. Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome. Res. 11:2001;1641-1650.
-
(2001)
Genome. Res.
, vol.11
, pp. 1641-1650
-
-
Kennedy, S.P.1
Ng, W.V.2
Salzberg, S.L.3
Hood, L.4
Dassarma, S.5
-
46
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphatereducing archaeon Archaeoglobus fulgidus
-
Klenk H. P., Clayton R. A., Tomb J. F., White O., Nelson K. E., Ketchum K. A., Dodson R. J., Gwinn M., Hickey E. K., Peterson J. D., Richardson D. L., Kerlavage A. R., Graham D. E., Kyrpides N. C., Fleischmann R. D., Quackenbush J., Lee N. H., Sutton G. G., Gill S., Kirkness E. F., Dougherty B. A., McKenney K., Adams M. D., Loftus B., Venter J. C. The complete genome sequence of the hyperthermophilic, sulphatereducing archaeon Archaeoglobus fulgidus. Nature. 390:1997;364-370.
-
(1997)
Nature
, vol.390
, pp. 364-370
-
-
Klenk, H.P.1
Clayton, R.A.2
Tomb, J.F.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
Dodson, R.J.7
Gwinn, M.8
Hickey, E.K.9
Peterson, J.D.10
Richardson, D.L.11
Kerlavage, A.R.12
Graham, D.E.13
Kyrpides, N.C.14
Fleischmann, R.D.15
Quackenbush, J.16
Lee, N.H.17
Sutton, G.G.18
Gill, S.19
Kirkness, E.F.20
Dougherty, B.A.21
McKenney, K.22
Adams, M.D.23
Loftus, B.24
Venter, J.C.25
more..
-
47
-
-
0033838010
-
Determining the relative rate of changes for prokaryotic and eukaryotic proteins with anciently duplicated paralogs
-
Koolman J. M., Doolittle R. F. Determining the relative rate of changes for prokaryotic and eukaryotic proteins with anciently duplicated paralogs. J. Mol. Evol. 51:2000;173-181.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 173-181
-
-
Koolman, J.M.1
Doolittle, R.F.2
-
48
-
-
0030868589
-
Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
-
Koonin E. V., Mushegian A. R., Galperin M. Y., Walker D. R. Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol. Microbiol. 25:1997;619-637.
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 619-637
-
-
Koonin, E.V.1
Mushegian, A.R.2
Galperin, M.Y.3
Walker, D.R.4
-
49
-
-
0024285855
-
Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
-
Lake J. A. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature. 331:1988;184-186.
-
(1988)
Nature
, vol.331
, pp. 184-186
-
-
Lake, J.A.1
-
50
-
-
0034821951
-
Genome evolution at the genus level: Comparison of three complete genomes of hyperthermophilic archaea
-
Lecompte O., Ripp R., Puzos-Barbe V., Duprat S., Heilig R., Dietrich J., Thierry J. C., Poch O. Genome evolution at the genus level: Comparison of three complete genomes of hyperthermophilic archaea. Genome Res. 11:2001;981-993.
-
(2001)
Genome Res.
, vol.11
, pp. 981-993
-
-
Lecompte, O.1
Ripp, R.2
Puzos-Barbe, V.3
Duprat, S.4
Heilig, R.5
Dietrich, J.6
Thierry, J.C.7
Poch, O.8
-
52
-
-
0032972657
-
Identification of putative chromosomal origins of replication in Archaea
-
Lopez P., Philippe H., Myllykallio H., Forterre P. Identification of putative chromosomal origins of replication in Archaea. Mol. Microbiol. 32:1999;883-886.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 883-886
-
-
Lopez, P.1
Philippe, H.2
Myllykallio, H.3
Forterre, P.4
-
53
-
-
0032815173
-
Control of DNA topology during thermal stress in hyperthermophilic archaea: DNA topoisomerase levels, activities and induced thermotolerance during heat and cold shock in sulfolobus
-
Lopez-Garcia P., Forterre P. Control of DNA topology during thermal stress in hyperthermophilic archaea: DNA topoisomerase levels, activities and induced thermotolerance during heat and cold shock in sulfolobus. Mol. Microbiol. 33:1999;766-777.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 766-777
-
-
Lopez-Garcia, P.1
Forterre, P.2
-
54
-
-
0345299175
-
Metabolic symbiosis at the origin of eukaryotes
-
Lopez-Garcia P., Moreira D. Metabolic symbiosis at the origin of eukaryotes. Trends Biochem. Sci. 24:1999;88-93.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 88-93
-
-
Lopez-Garcia, P.1
Moreira, D.2
-
56
-
-
0344604534
-
Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences
-
Maeder D. L., Weiss R. B., Dunn D. M., Cherry J. L., Gonzalez J. M., DiRuggiero J., Robb F. T. Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. Genetics. 152:1999;1299-1305.
-
(1999)
Genetics
, vol.152
, pp. 1299-1305
-
-
Maeder, D.L.1
Weiss, R.B.2
Dunn, D.M.3
Cherry, J.L.4
Gonzalez, J.M.5
Diruggiero, J.6
Robb, F.T.7
-
57
-
-
0032766490
-
Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
-
Makarova K. S., Aravind L., Galperin M. Y., Grishin N. V., Tatusov R. L., Wolf Y. I., Koonin E. V. Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell. Genome Res. 9:1999;608-628.
-
(1999)
Genome Res.
, vol.9
, pp. 608-628
-
-
Makarova, K.S.1
Aravind, L.2
Galperin, M.Y.3
Grishin, N.V.4
Tatusov, R.L.5
Wolf, Y.I.6
Koonin, E.V.7
-
58
-
-
0035805558
-
Bacterial genomic reorganization upon DNA replication
-
Makino S., Suzuki M. Bacterial genomic reorganization upon DNA replication. Science. 292:2001;803.
-
(2001)
Science
, vol.292
, pp. 803
-
-
Makino, S.1
Suzuki, M.2
-
59
-
-
0028236899
-
DNA stability at temperatures typical for hyperthermophiles
-
Marguet E., Forterre P. DNA stability at temperatures typical for hyperthermophiles. Nucleic Acids Res. 22:1994;1681-1686.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1681-1686
-
-
Marguet, E.1
Forterre, P.2
-
60
-
-
0034114417
-
A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
-
Massana R., DeLong E. F., Pedros-Alio C. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66:2000;1777-1787.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1777-1787
-
-
Massana, R.1
Delong, E.F.2
Pedros-Alio, C.3
-
61
-
-
0023909367
-
Methanohalophilus zhilinae sp. nov., an alkaliphilic, halophilic, methylotrophic methanogen
-
Mathrani I. M., Boone D. R., Mah R. A., Fox G. E., Lau P. P. Methanohalophilus zhilinae sp. nov., an alkaliphilic, halophilic, methylotrophic methanogen. Int. J. Syst. Bacteriol. 38:1988;139-142.
-
(1988)
Int. J. Syst. Bacteriol.
, vol.38
, pp. 139-142
-
-
Mathrani, I.M.1
Boone, D.R.2
Mah, R.A.3
Fox, G.E.4
Lau, P.P.5
-
62
-
-
0035949506
-
In vivo interactions of archaeal Cdc6/Orcl and minichromosome maintenance proteins with the replication origin
-
Matsunaga F., Forterre P., Ishino Y., Myllykallio H. In vivo interactions of archaeal Cdc6/Orcl and minichromosome maintenance proteins with the replication origin. Proc. Natl. Acad. Sci. USA. 98:2001;11,152-11,157.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11
-
-
Matsunaga, F.1
Forterre, P.2
Ishino, Y.3
Myllykallio, H.4
-
64
-
-
0034541136
-
Mapping of a chromosome replication origin in an archaeon: Response
-
Myllykallio H., Forterre P. Mapping of a chromosome replication origin in an archaeon: Response. Trends Microbiol. 8:2000;537-539.
-
(2000)
Trends Microbiol.
, vol.8
, pp. 537-539
-
-
Myllykallio, H.1
Forterre, P.2
-
65
-
-
0034705420
-
Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon
-
Myllykallio H., Lopez P., Lopez-Garcia P., Heilig R., Saurin W., Zivanovic Y., Philippe H., Forterre P. Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon. Science. 288:2000;2212-2215.
-
(2000)
Science
, vol.288
, pp. 2212-2215
-
-
Myllykallio, H.1
Lopez, P.2
Lopez-Garcia, P.3
Heilig, R.4
Saurin, W.5
Zivanovic, Y.6
Philippe, H.7
Forterre, P.8
-
66
-
-
0026602645
-
Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui
-
Mylvaganam S., Dennis P. P. Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics. 130:1992;399-410.
-
(1992)
Genetics
, vol.130
, pp. 399-410
-
-
Mylvaganam, S.1
Dennis, P.P.2
-
67
-
-
0034572821
-
Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
-
Natale D. A., Shankavaram U. T., Galperin M. Y., Wolf Y. I., Aravind L., Koonin E. V. Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol. 1:2000.
-
(2000)
Genome Biol.
, vol.1
-
-
Natale, D.A.1
Shankavaram, U.T.2
Galperin, M.Y.3
Wolf, Y.I.4
Aravind, L.5
Koonin, E.V.6
-
68
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
Nelson K. E., Clayton R. A., Gill S. R., Gwinn M. L., Dodson R. J., Haft D. H., Hickey E. K., Peterson J. D., Nelson W. C., Ketchum K. A., McDonald L., Utterback T. R., Malek J. A., Linher K. D., Garrett M. M., Stewart A. M., Cotton M. D., Pratt M. S., Phillips C. A., Richardson D., Heidelberg J., Sutton G. G., Fleischmann R. D., Eisen J. A., Fraser C. M. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature. 399:1999;323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
McDonald, L.11
Utterback, T.R.12
Malek, J.A.13
Linher, K.D.14
Garrett, M.M.15
Stewart, A.M.16
Cotton, M.D.17
Pratt, M.S.18
Phillips, C.A.19
Richardson, D.20
Heidelberg, J.21
Sutton, G.G.22
Fleischmann, R.D.23
Eisen, J.A.24
Fraser, C.M.25
more..
-
69
-
-
0035106010
-
Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria
-
Nesbo C. L., L'Haridon S., Stetter K. O., Doolittle W. F. Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria. Mol. Biol. Evol. 18:2001;362-375.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 362-375
-
-
Nesbo, C.L.1
L'Haridon, S.2
Stetter, K.O.3
Doolittle, W.F.4
-
70
-
-
0031851586
-
Methanocalculus halotolerans gen. nov., sp. nov., isolated from an oil-producing well
-
Ollivier B., Fardeau M. L., Cayol J. L., Magot M., Patel B. K., Prensier G., Garcia J. L. Methanocalculus halotolerans gen. nov., sp. nov., isolated from an oil-producing well. Int. J. Syst. Bacteriol. 48:1998;821-828.
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 821-828
-
-
Ollivier, B.1
Fardeau, M.L.2
Cayol, J.L.3
Magot, M.4
Patel, B.K.5
Prensier, G.6
Garcia, J.L.7
-
71
-
-
0031587820
-
Archaeal genomics: An overview
-
Olsen G. J., Woese C. R. Archaeal genomics: An overview. Cell. 89:1997;991-994.
-
(1997)
Cell
, vol.89
, pp. 991-994
-
-
Olsen, G.J.1
Woese, C.R.2
-
72
-
-
0035919654
-
Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis
-
Orphan V. J., House C. H., Hinrichs K. U., McKeegan K. D., DeLong E. F. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science. 293:2001;484-487.
-
(2001)
Science
, vol.293
, pp. 484-487
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.U.3
McKeegan, K.D.4
Delong, E.F.5
-
73
-
-
0032785122
-
The nature of the last universal common ancestor
-
Penny D., Poole A. The nature of the last universal common ancestor. Curr. Opin. Genet. Dev. 9:1999;672-677.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 672-677
-
-
Penny, D.1
Poole, A.2
-
75
-
-
0033214195
-
Early evolution: Prokaryotes, the new kids on the block
-
Poole A., Jeffares D., Penny D. Early evolution: Prokaryotes, the new kids on the block. Bioessays. 21:1999;880-889.
-
(1999)
Bioessays
, vol.21
, pp. 880-889
-
-
Poole, A.1
Jeffares, D.2
Penny, D.3
-
76
-
-
0035006181
-
Viruses of the extremely thermophilic archaeon Sulfolobus
-
Prangishvili D., Stedman K., Zillig W. Viruses of the extremely thermophilic archaeon Sulfolobus. Trends Microbiol. 9:2001;39-43.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 39-43
-
-
Prangishvili, D.1
Stedman, K.2
Zillig, W.3
-
77
-
-
0026684272
-
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
-
Rivera M. C., Lake J. A. Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science. 257:1992;74-76.
-
(1992)
Science
, vol.257
, pp. 74-76
-
-
Rivera, M.C.1
Lake, J.A.2
-
78
-
-
0035931866
-
Life in extreme environments
-
Rothschild L. J., Mancinelli R. L. Life in extreme environments. Nature. 409:2001;1092-1101.
-
(2001)
Nature
, vol.409
, pp. 1092-1101
-
-
Rothschild, L.J.1
Mancinelli, R.L.2
-
79
-
-
0034727087
-
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum
-
Ruepp A., Graml W., Santos-Martinez M. L., Koretke K. K., Volker C., Mewes H. W., Frishman D., Stocker S., Lupas A. N., Baumeister W. The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. Nature. 407:2000;508-513.
-
(2000)
Nature
, vol.407
, pp. 508-513
-
-
Ruepp, A.1
Graml, W.2
Santos-Martinez, M.L.3
Koretke, K.K.4
Volker, C.5
Mewes, H.W.6
Frishman, D.7
Stocker, S.8
Lupas, A.N.9
Baumeister, W.10
-
80
-
-
0034687586
-
From the cover: Widespread occurrence of structurally diverse tetraether membrane lipids: Evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles
-
Schouten S., Hopmans E. C., Pancost R. D., Damste J. S. From the cover: Widespread occurrence of structurally diverse tetraether membrane lipids: Evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles. Proc. Natl. Acad. Sci. USA. 97:2000;14,421-14,426.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 14
-
-
Schouten, S.1
Hopmans, E.C.2
Pancost, R.D.3
Damste, J.S.4
-
81
-
-
0034945083
-
The complete genome of the crenarchaeon Sulfolobus solfataricus P2
-
She Q., Singh R. K., Confalonieri F., Zivanovic Y., Allard G., Awayez M. J., Chan-Weiher C. C., Clausen I. G., Curtis B. A., De Moors A., Erauso G., Fletcher C., Gordon P. M., Heikamp-de Jong I., Jeffries A. C., Kozera C. J., Medina N., Peng X., Thi-Ngoc H. P., Redder P., Schenk M. E., Theriault C., Tolstrup N., Charlebois R. L., Doolittle W. F., Duguet M., Gaasterland T., Garrett R. A., Ragan M. A., Sensen C. W., Van der Oost J. The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc. Natl. Acad. Sci. USA. 98:2001;7835-7840.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7835-7840
-
-
She, Q.1
Singh, R.K.2
Confalonieri, F.3
Zivanovic, Y.4
Allard, G.5
Awayez, M.J.6
Chan-Weiher, C.C.7
Clausen, I.G.8
Curtis, B.A.9
De Moors, A.10
Erauso, G.11
Fletcher, C.12
Gordon, P.M.13
Heikamp-De Jong, I.14
Jeffries, A.C.15
Kozera, C.J.16
Medina, N.17
Peng, X.18
Thi-Ngoc, H.P.19
Redder, P.20
Schenk, M.E.21
Theriault, C.22
Tolstrup, N.23
Charlebois, R.L.24
Doolittle, W.F.25
Duguet, M.26
Gaasterland, T.27
Garrett, R.A.28
Ragan, M.A.29
Sensen, C.W.30
Van Der Oost, J.31
more..
-
82
-
-
0037007150
-
The complete genome of the hyperthermophile Methanopyrus kandleri AVI9 and monophyly of archaeal methanogens
-
Slesarev A. I., Mezhevaya K. V., Makarova K. S., Polushin N. N., Shcherbinina O. V., Shakhova V. V., Belova G. I., Aravind L., Natale D. A., Rogozin I. B., Tatusov R. L., Wolf Y. I., Stetter K. O., Malykh A. G., Koonin E. V., Kozyavkin S. A. The complete genome of the hyperthermophile Methanopyrus kandleri AVI9 and monophyly of archaeal methanogens. Proc. Natl. Acad. Sci. USA. 99:2002;4644-4649.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4644-4649
-
-
Slesarev, A.I.1
Mezhevaya, K.V.2
Makarova, K.S.3
Polushin, N.N.4
Shcherbinina, O.V.5
Shakhova, V.V.6
Belova, G.I.7
Aravind, L.8
Natale, D.A.9
Rogozin, I.B.10
Tatusov, R.L.11
Wolf, Y.I.12
Stetter, K.O.13
Malykh, A.G.14
Koonin, E.V.15
Kozyavkin, S.A.16
-
83
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel B., Bork P., Huynen M. A. Genome phylogeny based on gene content. Nat. Genet. 21:1999;108-110.
-
(1999)
Nat. Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
85
-
-
0035656111
-
Archaeal diversity in waters from deep South African gold mines
-
Takai K., Moser D. P., Onstott T. C., DeFlaun M., Fredrickson J. K. Archaeal diversity in waters from deep South African gold mines. Appl. Environ. Microbiol. 67:2001b;5750-5760.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5750-5760
-
-
Takai, K.1
Moser, D.P.2
Onstott, T.C.3
Deflaun, M.4
Fredrickson, J.K.5
-
86
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:1993;512-526.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
87
-
-
0036226078
-
HF2: A dsDNA tailed haloarchaeal virus with a mosaic genome
-
Tang S. L., Nuttall S., Ngui K., Fischer C., Lopez P., Dyall-Smith M. HF2: A dsDNA tailed haloarchaeal virus with a mosaic genome. Mol. Microbiol. 44:2002;283-296.
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 283-296
-
-
Tang, S.L.1
Nuttall, S.2
Ngui, K.3
Fischer, C.4
Lopez, P.5
Dyall-Smith, M.6
-
88
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov R. L., Natale D. A., Garkavtsev I. V., Tatusova T. A., Shankavaram U. T., Rao B. S., Kiryutin B., Galperin M. Y, Fedorova N. D., Koonin E. V. The COG database: New developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 9:2001;22-28.
-
(2001)
Nucleic Acids Res.
, vol.9
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
89
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
Tekaia F., Lazcano A., Dujon B. The genomic tree as revealed from whole proteome comparisons. Genome Res. 9:1999;550-557.
-
(1999)
Genome Res.
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
Lazcano, A.2
Dujon, B.3
-
90
-
-
0033776631
-
Genome rearrangement by replication-directed translocation
-
Tillier E. R., Collins R. A. Genome rearrangement by replication- directed translocation. Nat. Genet. 26:2000;195-197.
-
(2000)
Nat. Genet.
, vol.26
, pp. 195-197
-
-
Tillier, E.R.1
Collins, R.A.2
-
91
-
-
0033210762
-
Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes
-
Tourasse N. J., Gouy M. Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes. Mol. Phylogenet. Evol. 13:1999;159-168.
-
(1999)
Mol. Phylogenet. Evol.
, vol.13
, pp. 159-168
-
-
Tourasse, N.J.1
Gouy, M.2
-
92
-
-
0025023531
-
Evolution of the first metabolic cycles
-
Wachtershauser G. Evolution of the first metabolic cycles. Proc. Natl. Acad. Sci. USA. 87:1990;200-204.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 200-204
-
-
Wachtershauser, G.1
-
93
-
-
0023184331
-
Bacterial evolution
-
Woese C. R. Bacterial evolution. Microbiol. Rev. 51:1987;221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
94
-
-
0034682457
-
Interpreting the universal phylogenetic tree
-
Woese C. R. Interpreting the universal phylogenetic tree. Proc. Natl. Acad. Sci. USA. 97:2000;8392-8396.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 8392-8396
-
-
Woese, C.R.1
-
95
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
-
Woese C. R., Fox G. E. Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proc. Natl. Acad. Sci. USA. 74:1977;5088-5090.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
96
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA. 87:1990;4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
97
-
-
0034053846
-
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
-
Woese C. R., Olsen G. J., Ibba M., Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol. Mol. Biol. Rev. 64:2000;202-236.
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 202-236
-
-
Woese, C.R.1
Olsen, G.J.2
Ibba, M.3
Söll, D.4
-
98
-
-
0032830481
-
Evolution of amino-acyl tRNA synthetases - Analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
-
Wolf Y. I., Aravind L., Grishin N. V., Koonin E. V. Evolution of amino-acyl tRNA synthetases - analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res. 9:1999;689-710.
-
(1999)
Genome Res.
, vol.9
, pp. 689-710
-
-
Wolf, Y.I.1
Aravind, L.2
Grishin, N.V.3
Koonin, E.V.4
-
99
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf Y. I., Rogozin I. B., Grishin N. V., Tatusov R. L., Koonin E. V. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol. 1:2001;8.
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
100
-
-
0026277471
-
Comparative biochemistry of Archaea and Bacteria
-
Zillig W. Comparative biochemistry of Archaea and Bacteria. Curr. Opin. Genet. Dev. 1:1991;544-551.
-
(1991)
Curr. Opin. Genet. Dev.
, vol.1
, pp. 544-551
-
-
Zillig, W.1
-
101
-
-
0036567231
-
Pyrococcus genome comparison evidences chromosome suffling-driven evolution
-
Zivanovic Y., Lopez P., Phillipe H., Forterre P. Pyrococcus genome comparison evidences chromosome suffling-driven evolution. Nucleic Acids Res. 30:2002;1902-1910.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1902-1910
-
-
Zivanovic, Y.1
Lopez, P.2
Phillipe, H.3
Forterre, P.4
-
102
-
-
0035805558
-
Bacterial genomic reorganization upon DNA replication, response
-
Zivanovic Y., Myllykallio H., Forterre P. Bacterial genomic reorganization upon DNA replication, response. Science. 292:2001;803.
-
(2001)
Science
, vol.292
, pp. 803
-
-
Zivanovic, Y.1
Myllykallio, H.2
Forterre, P.3
|