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Volumn 24, Issue 2, 2007, Pages 457-464

The conversion of 3′ UTRs into coding regions

Author keywords

Alternative splicing; Evolution of novelty; Evolutionary innovation; Gene length; Genetic assimilation

Indexed keywords

3' UNTRANSLATED REGION; ARTICLE; CONTROLLED STUDY; GENE DUPLICATION; MOUSE; NONHUMAN; RAT; RODENT; SACCHAROMYCES; STOP CODON; YEAST; ANIMAL; FRAMESHIFT MUTATION; GENE DELETION; GENE EXPRESSION REGULATION; GENETICS; GENOME; MAMMAL; METABOLISM; MOLECULAR EVOLUTION; PRION;

EID: 33846840904     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl172     Document Type: Article
Times cited : (44)

References (54)
  • 1
    • 33846807494 scopus 로고    scopus 로고
    • Balakrishnan R, Christie KR, Costanzo MC, et al. (23 co-authors). 2005. Saccharomyces Genome Database [Internet]. [cited 2005 Jul 21]. Available from: ftp://ftp.yeastgenome.org/yeast/.
    • Balakrishnan R, Christie KR, Costanzo MC, et al. (23 co-authors). 2005. Saccharomyces Genome Database [Internet]. [cited 2005 Jul 21]. Available from: ftp://ftp.yeastgenome.org/yeast/.
  • 2
    • 0000229494 scopus 로고
    • The genetic assimilation of the dumpy phenocopy
    • Bateman KG. 1959. The genetic assimilation of the dumpy phenocopy. J Genet. 56:341-351.
    • (1959) J Genet , vol.56 , pp. 341-351
    • Bateman, K.G.1
  • 3
    • 33646872835 scopus 로고    scopus 로고
    • Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion
    • Byrnes JK, Morris GP, Li W-H. 2006. Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion. Mol Biol Evol. 23:1136-1143.
    • (2006) Mol Biol Evol , vol.23 , pp. 1136-1143
    • Byrnes, J.K.1    Morris, G.P.2    Li, W.-H.3
  • 5
    • 0038131090 scopus 로고    scopus 로고
    • Chain length dependence of apomyoglobin folding: Structural evolution from misfolded sheets to native helices
    • Chow CC, Chow C, Raghunathan V, Huppert TJ, Kimball EB, Cavagnero S. 2003. Chain length dependence of apomyoglobin folding: structural evolution from misfolded sheets to native helices. Biochemistry. 42:7090-7099.
    • (2003) Biochemistry , vol.42 , pp. 7090-7099
    • Chow, C.C.1    Chow, C.2    Raghunathan, V.3    Huppert, T.J.4    Kimball, E.B.5    Cavagnero, S.6
  • 6
    • 0037311448 scopus 로고    scopus 로고
    • The insertion of palindromic repeats in the evolution of proteins
    • Claverie JM, Ogata H. 2003. The insertion of palindromic repeats in the evolution of proteins. Trends Biochem Sci. 28:75-80.
    • (2003) Trends Biochem Sci , vol.28 , pp. 75-80
    • Claverie, J.M.1    Ogata, H.2
  • 8
    • 0001072895 scopus 로고
    • The use of confidence or fiducial limits illustrated in the case of the binomial
    • Clopper CJ, Pearson ES. 1934. The use of confidence or fiducial limits illustrated in the case of the binomial. Biometrika. 26:404-413.
    • (1934) Biometrika , vol.26 , pp. 404-413
    • Clopper, C.J.1    Pearson, E.S.2
  • 9
    • 33646556197 scopus 로고    scopus 로고
    • The rarity of gene shuffling in conserved genes
    • Conant GC, Wagner A. 2005. The rarity of gene shuffling in conserved genes. Genome Biol. 6:R50.
    • (2005) Genome Biol , vol.6
    • Conant, G.C.1    Wagner, A.2
  • 10
    • 0019044053 scopus 로고
    • Reversion from suppression to nonsuppression in SUQ5 [psi+] strains of yeast: The classification of mutations
    • Cox B, Tuite M, Mundy C. 1980. Reversion from suppression to nonsuppression in SUQ5 [psi+] strains of yeast: the classification of mutations. Genetics. 95:589-609.
    • (1980) Genetics , vol.95 , pp. 589-609
    • Cox, B.1    Tuite, M.2    Mundy, C.3
  • 11
    • 0242349695 scopus 로고    scopus 로고
    • Evidence that Egfr contributes to cryptic genetic variation for photoreceptor determination in natural populations of Drosophila melanogaster
    • Dworkin I, Palsson A, Birdsall K, Gibson G. 2003. Evidence that Egfr contributes to cryptic genetic variation for photoreceptor determination in natural populations of Drosophila melanogaster. Curr Biol. 13:1888-1893.
    • (2003) Curr Biol , vol.13 , pp. 1888-1893
    • Dworkin, I.1    Palsson, A.2    Birdsall, K.3    Gibson, G.4
  • 13
    • 8844244033 scopus 로고    scopus 로고
    • Very low gene duplication rate in the yeast genome
    • Gao L-z, Innan H. 2004. Very low gene duplication rate in the yeast genome. Science. 306:1367-1370.
    • (2004) Science , vol.306 , pp. 1367-1370
    • Gao, L.-Z.1    Innan, H.2
  • 14
    • 33846799119 scopus 로고    scopus 로고
    • Grate L, Telerski A, Clark T, Centers R, Ares M. 2000. Ares lab yeast intron database [Internet]. [cited 2005 Aug 1]. Available from: http://www.cse.ucsc.edu/research/compbio/yeast_introns/currentDB/Extras.html.
    • Grate L, Telerski A, Clark T, Centers R, Ares M. 2000. Ares lab yeast intron database [Internet]. [cited 2005 Aug 1]. Available from: http://www.cse.ucsc.edu/research/compbio/yeast_introns/currentDB/Extras.html.
  • 15
    • 0346158529 scopus 로고    scopus 로고
    • Insertion-deletion biases and the evolution of genome size
    • Gregory TR. 2004. Insertion-deletion biases and the evolution of genome size. Gene. 324:15-34.
    • (2004) Gene , vol.324 , pp. 15-34
    • Gregory, T.R.1
  • 16
    • 0036300794 scopus 로고    scopus 로고
    • A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
    • Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M. 2002. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J Mol Biol. 316:409-419.
    • (2002) J Mol Biol , vol.316 , pp. 409-419
    • Harrison, P.1    Kumar, A.2    Lan, N.3    Echols, N.4    Snyder, M.5    Gerstein, M.6
  • 17
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • Kellis M, Birren BW, Lander ES. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature. 428:617-624.
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 18
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature. 423:241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 19
    • 0037370461 scopus 로고    scopus 로고
    • Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences
    • Kondrashov FA, Koonin EV. 2003. Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences. Trends Genet. 19:115-119.
    • (2003) Trends Genet , vol.19 , pp. 115-119
    • Kondrashov, F.A.1    Koonin, E.V.2
  • 21
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • Lee C, Grasso C, Sharlow MF. 2002. Multiple sequence alignment using partial order graphs. Bioinformatics. 18:452-464.
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 23
    • 33745585334 scopus 로고    scopus 로고
    • Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
    • Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ. 2006. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci USA. 103:9935-9939.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9935-9939
    • Levine, M.T.1    Jones, C.D.2    Kern, A.D.3    Lindfors, H.A.4    Begun, D.J.5
  • 24
    • 0027905006 scopus 로고
    • Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
    • Long MY, Langley CH. 1993. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science. 260:91-95.
    • (1993) Science , vol.260 , pp. 91-95
    • Long, M.Y.1    Langley, C.H.2
  • 25
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science. 290:1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 26
    • 16344362654 scopus 로고    scopus 로고
    • The evolution of transcription- initiation sites
    • Lynch M, Scofield DG, Hong X. 2005. The evolution of transcription- initiation sites. Mol Biol Evol. 22:1137-1146.
    • (2005) Mol Biol Evol , vol.22 , pp. 1137-1146
    • Lynch, M.1    Scofield, D.G.2    Hong, X.3
  • 27
    • 4444375614 scopus 로고    scopus 로고
    • Genetic assimilation can occur in the absence of selection for the assimilating phenotype, suggesting a role for the canalization heuristic
    • Masel J. 2004. Genetic assimilation can occur in the absence of selection for the assimilating phenotype, suggesting a role for the canalization heuristic. J Evol Biol. 17:1106-1110.
    • (2004) J Evol Biol , vol.17 , pp. 1106-1110
    • Masel, J.1
  • 30
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
    • Modrek B, Lee CJ. 2003. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat Genet. 34:177-180.
    • (2003) Nat Genet , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.J.2
  • 31
    • 0034964442 scopus 로고    scopus 로고
    • Yeast [PSI+] "prions" that are crosstransmissible and susceptible beyond a species barrier through a quasi-prion state
    • Nakayashiki T, Ebihara K, Bannai H, Nakamura Y. 2001. Yeast [PSI+] "prions" that are crosstransmissible and susceptible beyond a species barrier through a quasi-prion state. Mol Cell. 7:1121-1130.
    • (2001) Mol Cell , vol.7 , pp. 1121-1130
    • Nakayashiki, T.1    Ebihara, K.2    Bannai, H.3    Nakamura, Y.4
  • 33
    • 0036267441 scopus 로고    scopus 로고
    • Translational readthrough of the PDE2 stop codon modulates cAMP levels in Saccharomyces cerevisiae
    • Namy O, Duchateau-Nguyen G, Rousset JP. 2002. Translational readthrough of the PDE2 stop codon modulates cAMP levels in Saccharomyces cerevisiae. Mol Microbiol. 43:641-652.
    • (2002) Mol Microbiol , vol.43 , pp. 641-652
    • Namy, O.1    Duchateau-Nguyen, G.2    Rousset, J.P.3
  • 34
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A, Li WHS. 2001. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17:619-621.
    • (2001) Trends Genet , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.S.2
  • 38
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A, Williams BL, King N, Carroll SB. 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature. 425:798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 39
  • 40
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 16:1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 41
    • 0004249246 scopus 로고
    • New York: W.H. Freeman and Company. p
    • Sokal RR, Rohlf FJ. 1995. Biometry. New York: W.H. Freeman and Company. p. 724-739.
    • (1995) Biometry , pp. 724-739
    • Sokal, R.R.1    Rohlf, F.J.2
  • 43
    • 0005614460 scopus 로고
    • Selection for subthreshold differences and the origin of pseudoexogenous adaptations
    • Stern C. 1958. Selection for subthreshold differences and the origin of pseudoexogenous adaptations. Am Nat. 92:313-316.
    • (1958) Am Nat , vol.92 , pp. 313-316
    • Stern, C.1
  • 44
    • 33846844845 scopus 로고    scopus 로고
    • Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sunderland (MA): Sinauer Associates.
    • Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sunderland (MA): Sinauer Associates.
  • 45
    • 4544235083 scopus 로고    scopus 로고
    • Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits
    • True HL, Berlin I, Lindquist SL. 2004. Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits. Nature. 431:184-187.
    • (2004) Nature , vol.431 , pp. 184-187
    • True, H.L.1    Berlin, I.2    Lindquist, S.L.3
  • 46
    • 0034727077 scopus 로고    scopus 로고
    • A yeast prion provides a mechanism for genetic variation and phenotypic diversity
    • True HL, Lindquist SL. 2000. A yeast prion provides a mechanism for genetic variation and phenotypic diversity. Nature. 407:477-483.
    • (2000) Nature , vol.407 , pp. 477-483
    • True, H.L.1    Lindquist, S.L.2
  • 47
    • 10344219973 scopus 로고    scopus 로고
    • General tendency for conservation of protein length across eukaryotic kingdoms
    • Wang DY, Hsieh M, Li WH. 2005. General tendency for conservation of protein length across eukaryotic kingdoms. Mol Biol Evol. 22:142-147.
    • (2005) Mol Biol Evol , vol.22 , pp. 142-147
    • Wang, D.Y.1    Hsieh, M.2    Li, W.H.3
  • 48
    • 24344472974 scopus 로고    scopus 로고
    • Wang W, Zheng H, Yang S, et al. (17 co-authors). 2005. Origin and evolution of new exons in rodents. Genome Res. 15:1258-1264.
    • Wang W, Zheng H, Yang S, et al. (17 co-authors). 2005. Origin and evolution of new exons in rodents. Genome Res. 15:1258-1264.
  • 49
    • 0018408667 scopus 로고
    • Recent developments in the molecular genetics of human hemoglobin
    • Weatherall DJ, Clegg JB. 1979. Recent developments in the molecular genetics of human hemoglobin. Cell. 16:467-479.
    • (1979) Cell , vol.16 , pp. 467-479
    • Weatherall, D.J.1    Clegg, J.B.2
  • 50
    • 22544436364 scopus 로고    scopus 로고
    • Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation
    • Wilson MA, Meaux S, Parker R, van Hoof A. 2005. Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation. Proc Natl Acad Sci USA. 102:10244-10249.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 10244-10249
    • Wilson, M.A.1    Meaux, S.2    Parker, R.3    van Hoof, A.4
  • 51
    • 33646876182 scopus 로고    scopus 로고
    • Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms
    • Xu L, Chen H, Hu XH, Zhang RM, Zhang Z, Luo ZW. 2006. Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms. Mol Biol Evol. 23:1107-1108.
    • (2006) Mol Biol Evol , vol.23 , pp. 1107-1108
    • Xu, L.1    Chen, H.2    Hu, X.H.3    Zhang, R.M.4    Zhang, Z.5    Luo, Z.W.6
  • 52
    • 0033545986 scopus 로고    scopus 로고
    • Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors
    • Yun SH, Berbee ML, Yoder OC, Turgeon BG. 1999. Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors. Proc Natl Acad Sci USA. 96:5592-5597.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 5592-5597
    • Yun, S.H.1    Berbee, M.L.2    Yoder, O.C.3    Turgeon, B.G.4
  • 53
    • 0034161476 scopus 로고    scopus 로고
    • Protein-length distributions for the three domains of life
    • Zhang JZ. 2000. Protein-length distributions for the three domains of life. Trends Genet. 16:107-109.
    • (2000) Trends Genet , vol.16 , pp. 107-109
    • Zhang, J.Z.1
  • 54


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.