-
1
-
-
0041817645
-
Translational selection and yeast proteome evolution
-
Akashi, H. 2003. Translational selection and yeast proteome evolution. Genetics 164:1291-1303.
-
(2003)
Genetics
, vol.164
, pp. 1291-1303
-
-
Akashi, H.1
-
2
-
-
0036601353
-
Trends in protein evolution inferred from sequence and structure analysis
-
Aravind, L., R. Mazumder, S. Vasudevan, and E. V. Koonin. 2002. Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struc. Biol. 12:392-399
-
(2002)
Curr. Opin. Struc. Biol.
, vol.12
, pp. 392-399
-
-
Aravind, L.1
Mazumder, R.2
Vasudevan, S.3
Koonin, E.V.4
-
3
-
-
0344952061
-
The evolutionary position of nematodes
-
Blair, J. E., K. Ikeo, T. Gojobori, and S. B. Hedges. 2002. The evolutionary position of nematodes. BMC Evol. Biol. 2:7.
-
(2002)
BMC Evol. Biol.
, vol.2
, pp. 7
-
-
Blair, J.E.1
Ikeo, K.2
Gojobori, T.3
Hedges, S.B.4
-
4
-
-
0038131090
-
Chain length dependence of apomyoglobin folding: Structure evolution from misfolded sheets to native helices
-
Chow, C. C., C. Chow, V. Raghunathan, T. J. Huppert, E. B. Kimball, and S. Cavagnero. 2003. Chain length dependence of apomyoglobin folding: structure evolution from misfolded sheets to native helices. Biochemistry 42:7090-7099.
-
(2003)
Biochemistry
, vol.42
, pp. 7090-7099
-
-
Chow, C.C.1
Chow, C.2
Raghunathan, V.3
Huppert, T.J.4
Kimball, E.B.5
Cavagnero, S.6
-
5
-
-
0037311448
-
The insertion of palindromic repeats in the evolution of proteins
-
Claverie, J., and H. Ogata. 2003. The insertion of palindromic repeats in the evolution of proteins. Trends Biochem. Sci. 28:75-80.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 75-80
-
-
Claverie, J.1
Ogata, H.2
-
6
-
-
0019434148
-
Causes of more frequent deletions than insertions in mutations and protein evolution
-
de long, W. W., and L. Ryden. 1981. Causes of more frequent deletions than insertions in mutations and protein evolution. Nature 290:157-159.
-
(1981)
Nature
, vol.290
, pp. 157-159
-
-
De Long, W.W.1
Ryden, L.2
-
7
-
-
0035823119
-
Understanding hierarchical protein evolution from first principles
-
Dokholyan, N. V., and E. I. Shakhnovich. 2001. Understanding hierarchical protein evolution from first principles. J. Mol. Biol. 312:289-307.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 289-307
-
-
Dokholyan, N.V.1
Shakhnovich, E.I.2
-
8
-
-
0036846746
-
The origin and evolution of model organisms
-
Hedges, S. B. 2002. The origin and evolution of model organisms. Nat. Rev. Genet. 3:838-849.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 838-849
-
-
Hedges, S.B.1
-
9
-
-
0037418227
-
A global representation of the protein fold space
-
Hou, J., G. E. Sims, C. Zhang, and S. H. Kim. 2003. A global representation of the protein fold space. Proc. Natl. Acad. Sci. USA 100:2386-2390.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 2386-2390
-
-
Hou, J.1
Sims, G.E.2
Zhang, C.3
Kim, S.H.4
-
10
-
-
0442323217
-
Differential loss of ancestral gene families as a source of genomic divergence in animals
-
Hughes, A. L., and R. Friedman. 2004. Differential loss of ancestral gene families as a source of genomic divergence in animals. Proc. R. Soc. Lond. B Biol. Sci. 271(suppl. 3):S107-109.
-
(2004)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.271
, Issue.3 SUPPL.
-
-
Hughes, A.L.1
Friedman, R.2
-
11
-
-
0036431018
-
A novel endogenous retrovirus-related element in the human genome resembles a DNA transposon: Evidence for an evolutionary link?
-
Hughes, J. F., and J. M. Coffin. 2002. A novel endogenous retrovirus-related element in the human genome resembles a DNA transposon: evidence for an evolutionary link? Genomics 80:453-455.
-
(2002)
Genomics
, vol.80
, pp. 453-455
-
-
Hughes, J.F.1
Coffin, J.M.2
-
12
-
-
0031889752
-
Domain assignment for protein structures using a consensus approach: Characterization and analysis
-
Jones, S., M. Stewart, A. Michie, M. B. Swindells, C. Orengo, and J. M. Thornton. 1998. Domain assignment for protein structures using a consensus approach: characterization and analysis. Protein Sci. 7:233-242.
-
(1998)
Protein Sci.
, vol.7
, pp. 233-242
-
-
Jones, S.1
Stewart, M.2
Michie, A.3
Swindells, M.B.4
Orengo, C.5
Thornton, J.M.6
-
13
-
-
0036851263
-
Signatures of domain shuffling in the human genome
-
Kaessmann, H., S. Zollner, A. Nekrutenko, and W. H. Li. 2002. Signatures of domain shuffling in the human genome. Genome Res. 12:1642-1650.
-
(2002)
Genome Res.
, vol.12
, pp. 1642-1650
-
-
Kaessmann, H.1
Zollner, S.2
Nekrutenko, A.3
Li, W.H.4
-
14
-
-
0035936144
-
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
-
Katinka, M. D., S. Duprat, E. Cornillot et al. (17 co-authors). 2001. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414:450-453.
-
(2001)
Nature
, vol.414
, pp. 450-453
-
-
Katinka, M.D.1
Duprat, S.2
Cornillot, E.3
-
15
-
-
0036600834
-
Evolution of protein structures and functions
-
Kinch, L. N., and N. V. Grishin. 2002. Evolution of protein structures and functions. Curr. Opin. Struct. Biol. 12:400-408.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 400-408
-
-
Kinch, L.N.1
Grishin, N.V.2
-
16
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
Krylov, D. M., Y. I. Wolf, I. B. Rogozin, and E. V. Koonin. 2003. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13:2229-2235.
-
(2003)
Genome Res.
, vol.13
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
17
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S., L. M. Linton, B. Birren et al. (255 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
18
-
-
0003421005
-
-
Sinauer Associated, Sunderland, Mass.
-
Li, W. H. 1997. Molecular evolution. Sinauer Associated, Sunderland, Mass.
-
(1997)
Molecular Evolution
-
-
Li, W.H.1
-
19
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li, W. H., Z. Gu, H. Wang, and A. Nekrutenko. 2001. Evolutionary analyses of the human genome. Nature 409:847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
20
-
-
0035783055
-
On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relices of an ancient peptide world?
-
Lupas, A. N., C. P. Ponting, and R. R. Russell. 2001. On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relices of an ancient peptide world? J. Struct. Biol. 134:191-203.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 191-203
-
-
Lupas, A.N.1
Ponting, C.P.2
Russell, R.R.3
-
21
-
-
0034707216
-
Genomic scrap yard: How genomes utilize all that junk
-
Makalowski, W. 2000. Genomic scrap yard: how genomes utilize all that junk. Gene 259:61-67.
-
(2000)
Gene
, vol.259
, pp. 61-67
-
-
Makalowski, W.1
-
22
-
-
0032936541
-
Evolutionary molecular engineering by random elongation mutagenesis
-
Matsuura, T., K. Miyai, S. Trakulnaleamsai, T. Yomo, Y. Shima, S. Miki, K. Yamamoto, and I. Urabe. 1999. Evolutionary molecular engineering by random elongation mutagenesis. Nat. Biotechnol. 17:58-61.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 58-61
-
-
Matsuura, T.1
Miyai, K.2
Trakulnaleamsai, S.3
Yomo, T.4
Shima, Y.5
Miki, S.6
Yamamoto, K.7
Urabe, I.8
-
23
-
-
0032126484
-
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
-
Moriyama, E. N., and J. R. Powell. 1998. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 26:3188-3193.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3188-3193
-
-
Moriyama, E.N.1
Powell, J.R.2
-
24
-
-
0035207792
-
Does the recombination rate affect the efficiency of purifying selection? The yeast genome provides a partial answer
-
Pal, C., B. Papp, and L. D. Hurst. 2001. Does the recombination rate affect the efficiency of purifying selection? The yeast genome provides a partial answer. Mol. Biol. Evol. 18:2323-2326.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2323-2326
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
26
-
-
0041317258
-
More than the sum of their parts: On the evolution of proteins from peptides
-
Soding, J., and A. N. Lupas. 2003. More than the sum of their parts: on the evolution of proteins from peptides. BioEssays 25:837-846.
-
(2003)
BioEssays
, vol.25
, pp. 837-846
-
-
Soding, J.1
Lupas, A.N.2
-
27
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L., N. D. Fedorova, J. D. Jackson et al. (17 co-authors). 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41-54.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41-54
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
-
28
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0037308797
-
Evolutionary aspects of protein structure and folding
-
Trifonov, E. N., and L. N. Berezovsky. 2003. Evolutionary aspects of protein structure and folding. Curr. Opin. Struct. Biol. 13:110-114.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 110-114
-
-
Trifonov, E.N.1
Berezovsky, L.N.2
-
30
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C., M. D. Adams, E. W. Myers et al. (274 co-authors). 2001. The sequence of the human genome. Science 291:1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
31
-
-
0038708556
-
Rate of protein evolution versus fitness effect of gene deletion
-
Yang, J., Z. Gu, and W. H. Li. 2003. Rate of protein evolution versus fitness effect of gene deletion. Mol. Biol. Evol. 20:772-774.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 772-774
-
-
Yang, J.1
Gu, Z.2
Li, W.H.3
-
32
-
-
0034161476
-
Protein-length distributions for the three domains of life
-
Zhang, J. 2000. Protein-length distributions for the three domains of life. Trends Genet. 16:107-109.
-
(2000)
Trends Genet.
, vol.16
, pp. 107-109
-
-
Zhang, J.1
|