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Volumn 28, Issue 2, 2003, Pages 75-80

The insertion of palindromic repeats in the evolution of proteins

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN;

EID: 0037311448     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0004(02)00036-1     Document Type: Review
Times cited : (39)

References (42)
  • 1
    • 0034644597 scopus 로고    scopus 로고
    • Selfish DNA in protein-coding genes of Rickettsia
    • Ogata H., et al. Selfish DNA in protein-coding genes of Rickettsia. Science. 290:2000;347-350.
    • (2000) Science , vol.290 , pp. 347-350
    • Ogata, H.1
  • 2
    • 0035860458 scopus 로고    scopus 로고
    • Mechanisms of evolution in Rickettsia conorii and R. prowazekii
    • Ogata H., et al. Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science. 293:2001;2093-2098.
    • (2001) Science , vol.293 , pp. 2093-2098
    • Ogata, H.1
  • 3
    • 0036112440 scopus 로고    scopus 로고
    • Protein coding palindromes are a unique but recurrent feature in Rickettsia
    • Ogata H., et al. Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res. 12:2002;808-816.
    • (2002) Genome Res. , vol.12 , pp. 808-816
    • Ogata, H.1
  • 4
    • 0000117110 scopus 로고    scopus 로고
    • Repeated sequences
    • Neidhardt F.C. et al. ASM Press
    • Bachellier S., et al. Repeated sequences. Neidhardt F.C., et al. Escherichia coli and Salmonella. 2:1996;2012-2040 ASM Press.
    • (1996) Escherichia coli and Salmonella , vol.2 , pp. 2012-2040
    • Bachellier, S.1
  • 5
    • 0033386645 scopus 로고    scopus 로고
    • Novel intergenic repeats of Escherichia coli K-12
    • Rudd K.E. Novel intergenic repeats of Escherichia coli K-12. Res. Microbiol. 150:1999;653-664.
    • (1999) Res. Microbiol. , vol.150 , pp. 653-664
    • Rudd, K.E.1
  • 6
    • 0036021697 scopus 로고    scopus 로고
    • Genome deterioration: Loss of repeated sequences and accumulation of junk DNA
    • Frank A.C., et al. Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica. 115:2002;1-12.
    • (2002) Genetica , vol.115 , pp. 1-12
    • Frank, A.C.1
  • 7
    • 0029552138 scopus 로고
    • Structure, function, and evolution of bacterial reverse transcriptase
    • Inouye S., Inouye M. Structure, function, and evolution of bacterial reverse transcriptase. Virus Genes. 11:1995;81-94.
    • (1995) Virus Genes , vol.11 , pp. 81-94
    • Inouye, S.1    Inouye, M.2
  • 8
    • 0028338697 scopus 로고
    • Open reading frames in the antisense strands of genes coding for glycolytic enzymes in Saccharomyces cerevisiae
    • Boles E., Zimmermann F.K. Open reading frames in the antisense strands of genes coding for glycolytic enzymes in Saccharomyces cerevisiae. Mol. Gen. Genet. 243:1994;363-368.
    • (1994) Mol. Gen. Genet. , vol.243 , pp. 363-368
    • Boles, E.1    Zimmermann, F.K.2
  • 9
    • 0027980029 scopus 로고
    • A frame-specific symmetry of complementary strands of DNA suggests the existence of genes on the antisense strand
    • Yomo T., Urabe I. A frame-specific symmetry of complementary strands of DNA suggests the existence of genes on the antisense strand. J. Mol. Evol. 38:1994;113-120.
    • (1994) J. Mol. Evol. , vol.38 , pp. 113-120
    • Yomo, T.1    Urabe, I.2
  • 10
    • 0028789663 scopus 로고
    • Sense in antisense?
    • Forsdyke D.R. Sense in antisense? J. Mol. Evol. 41:1995;582-586.
    • (1995) J. Mol. Evol. , vol.41 , pp. 582-586
    • Forsdyke, D.R.1
  • 11
    • 0028004414 scopus 로고
    • Intrinsic and extrinsic approaches for detecting genes in a bacterial genome
    • Borodovsky M., et al. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Nucleic Acids Res. 22:1994;4756-4767.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4756-4767
    • Borodovsky, M.1
  • 12
    • 0029284804 scopus 로고
    • G and C accumulation at silent positions of codons produces additional ORFs
    • Boldogkoi Z., et al. G and C accumulation at silent positions of codons produces additional ORFs. Trends Genet. 11:1995;125-126.
    • (1995) Trends Genet. , vol.11 , pp. 125-126
    • Boldogkoi, Z.1
  • 13
    • 0022431785 scopus 로고
    • The statistical distribution of nucleic acid similarities
    • Smith T.F., et al. The statistical distribution of nucleic acid similarities. Nucleic Acids Res. 13:1985;645-656.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 645-656
    • Smith, T.F.1
  • 14
    • 0029029802 scopus 로고
    • Genetic origins of protein shape and interaction rules
    • Blalock J.E. Genetic origins of protein shape and interaction rules. Nat. Med. 1:1995;876-878.
    • (1995) Nat. Med. , vol.1 , pp. 876-878
    • Blalock, J.E.1
  • 15
    • 0021273917 scopus 로고
    • Hydropathic anti-complementarity of amino acids based on the genetic code
    • Blalock J.E., Smith E.M. Hydropathic anti-complementarity of amino acids based on the genetic code. Biochem. Biophys. Res. Commun. 121:1984;203-207.
    • (1984) Biochem. Biophys. Res. Commun. , vol.121 , pp. 203-207
    • Blalock, J.E.1    Smith, E.M.2
  • 16
    • 0342557269 scopus 로고
    • Similarity between the corticotropin (ACTH) receptor and a peptide encoded by an RNA that is complementary to ACTH mRNA
    • Bost K.L., et al. Similarity between the corticotropin (ACTH) receptor and a peptide encoded by an RNA that is complementary to ACTH mRNA. Proc. Natl. Acad. Sci. U. S. A. 82:1985;1372-1375.
    • (1985) Proc. Natl. Acad. Sci. U. S. A. , vol.82 , pp. 1372-1375
    • Bost, K.L.1
  • 17
    • 0029029804 scopus 로고
    • The antisense homology box: A new motif within proteins that encodes biologically active peptides
    • Baranyi L., et al. The antisense homology box: a new motif within proteins that encodes biologically active peptides. Nat. Med. 1:1995;894-901.
    • (1995) Nat. Med. , vol.1 , pp. 894-901
    • Baranyi, L.1
  • 18
    • 23444436172 scopus 로고
    • Protein design by binary patterning of polar and nonpolar amino acids
    • Kamtekar S., et al. Protein design by binary patterning of polar and nonpolar amino acids. Science. 262:1993;1680-1685.
    • (1993) Science , vol.262 , pp. 1680-1685
    • Kamtekar, S.1
  • 19
    • 0032494141 scopus 로고    scopus 로고
    • Assembly of exons from unitary transposable genetic elements: Implications for the evolution of protein-protein interactions
    • Dwyer D.S. Assembly of exons from unitary transposable genetic elements: implications for the evolution of protein-protein interactions. J. Theor. Biol. 194:1998;11-27.
    • (1998) J. Theor. Biol. , vol.194 , pp. 11-27
    • Dwyer, D.S.1
  • 20
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • Hofacker I.L., et al. Fast folding and comparison of RNA secondary structures. Monatsh. Chem. 125:1994;167-188.
    • (1994) Monatsh. Chem. , vol.125 , pp. 167-188
    • Hofacker, I.L.1
  • 21
    • 0028234347 scopus 로고
    • Sequences with 'unusual' amino acid compositions
    • Wootton J.C. Sequences with 'unusual' amino acid compositions. Curr. Opin. Struct. Biol. 4:1994;413-421.
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 413-421
    • Wootton, J.C.1
  • 22
    • 0026566796 scopus 로고
    • Analysis of insertions/deletions in protein structures
    • Pascarella S., Argos P. Analysis of insertions/deletions in protein structures. J. Mol. Biol. 224:1992;461-471.
    • (1992) J. Mol. Biol. , vol.224 , pp. 461-471
    • Pascarella, S.1    Argos, P.2
  • 23
    • 0031576337 scopus 로고    scopus 로고
    • Glutamine, alanine or glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates
    • Ladurner A.G., Fersht A.R. Glutamine, alanine or glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates. J. Mol. Biol. 273:1997;330-337.
    • (1997) J. Mol. Biol. , vol.273 , pp. 330-337
    • Ladurner, A.G.1    Fersht, A.R.2
  • 24
    • 0032936541 scopus 로고    scopus 로고
    • Evolutionary molecular engineering by random elongation mutagenesis
    • Matsuura T., et al. Evolutionary molecular engineering by random elongation mutagenesis. Nat. Biotechnol. 17:1999;58-61.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 58-61
    • Matsuura, T.1
  • 25
    • 0031047590 scopus 로고    scopus 로고
    • Insertion of foreign random sequences of 120 amino acid residues into an active enzyme
    • Doi N., et al. Insertion of foreign random sequences of 120 amino acid residues into an active enzyme. FEBS Lett. 402:1997;177-180.
    • (1997) FEBS Lett. , vol.402 , pp. 177-180
    • Doi, N.1
  • 26
    • 0028588070 scopus 로고
    • Domain insertion
    • Russell R.B. Domain insertion. Protein Eng. 7:1994;1407-1410.
    • (1994) Protein Eng. , vol.7 , pp. 1407-1410
    • Russell, R.B.1
  • 27
    • 0027998458 scopus 로고
    • PH domain: The first anniversary
    • Gibson T.J., et al. PH domain: the first anniversary. Trends Biochem. Sci. 19:1994;349-353.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 349-353
    • Gibson, T.J.1
  • 28
    • 0011542799 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman A., et al. The Pfam protein families database. Nucleic Acids Res. 30:2002;276-280.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 276-280
    • Bateman, A.1
  • 29
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29:2001;37-40.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 37-40
    • Apweiler, R.1
  • 30
    • 0031838719 scopus 로고    scopus 로고
    • Short-sequence DNA repeats in prokaryotic genomes
    • van Belkum A., et al. Short-sequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62:1998;275-293.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 275-293
    • Van Belkum, A.1
  • 31
    • 0036125393 scopus 로고    scopus 로고
    • Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations
    • Metzgar D., et al. Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations. Genome Res. 12:2002;408-413.
    • (2002) Genome Res. , vol.12 , pp. 408-413
    • Metzgar, D.1
  • 32
    • 0027306173 scopus 로고
    • Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
    • Strand M., et al. Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature. 365:1993;274-276.
    • (1993) Nature , vol.365 , pp. 274-276
    • Strand, M.1
  • 33
    • 0020769933 scopus 로고
    • The primitive code and repeats of base oligomers as the primordial protein-encoding sequence
    • Ohno S., Epplen J.T. The primitive code and repeats of base oligomers as the primordial protein-encoding sequence. Proc. Natl. Acad. Sci. U. S. A. 80:1983;3391-3395.
    • (1983) Proc. Natl. Acad. Sci. U. S. A. , vol.80 , pp. 3391-3395
    • Ohno, S.1    Epplen, J.T.2
  • 34
    • 0023066448 scopus 로고
    • Evolution from primordial oligomeric repeats to modern coding sequences
    • Ohno S. Evolution from primordial oligomeric repeats to modern coding sequences. J. Mol. Evol. 25:1987;325-329.
    • (1987) J. Mol. Evol. , vol.25 , pp. 325-329
    • Ohno, S.1
  • 35
    • 0030970280 scopus 로고    scopus 로고
    • Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish
    • Chen L., et al. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. Proc. Natl. Acad. Sci. U. S. A. 94:1997;3811-3816.
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 3811-3816
    • Chen, L.1
  • 36
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9:1999;657-663.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 37
    • 0031440969 scopus 로고    scopus 로고
    • Molecular domestication of mobile elements
    • Miller W.J., et al. Molecular domestication of mobile elements. Genetica. 100:1997;261-270.
    • (1997) Genetica , vol.100 , pp. 261-270
    • Miller, W.J.1
  • 38
    • 0028064304 scopus 로고
    • A complete Alu element within the coding sequence of a central gene
    • Margalit H., et al. A complete Alu element within the coding sequence of a central gene. Cell. 78:1994;173-174.
    • (1994) Cell , vol.78 , pp. 173-174
    • Margalit, H.1
  • 39
    • 0028339280 scopus 로고
    • Alu sequences in RMSA-1 protein?
    • Tugendreich S., et al. Alu sequences in RMSA-1 protein? Nature. 370:1994;106.
    • (1994) Nature , vol.370 , pp. 106
    • Tugendreich, S.1
  • 40
    • 0030747406 scopus 로고    scopus 로고
    • Erratum
    • Yeo J.P., et al. Erratum. Nature. 388:1997;697.
    • (1997) Nature , vol.388 , pp. 697
    • Yeo, J.P.1
  • 42
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A., Li W.H. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17:2001;619-621.
    • (2001) Trends Genet. , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.