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Volumn 23, Issue 6, 2006, Pages 1136-1143

Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion

Author keywords

Adjacent gene orientation; Gene deletion; Gene expression; Intergenic spacing; Saccharomyces; Whole genome duplication

Indexed keywords

ARTICLE; EVOLUTION; GENE DELETION; GENE DUPLICATION; GENE MUTATION; GENETIC ANALYSIS; GENOME; NONHUMAN; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 33646872835     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msj121     Document Type: Article
Times cited : (30)

References (23)
  • 1
    • 0348013067 scopus 로고    scopus 로고
    • Gene length and proximity to neighbors affect genome-wide expression levels
    • Chiaromonte, F., W. Miller, and E. E. Bouhassira. 2003. Gene length and proximity to neighbors affect genome-wide expression levels. Genome Res. 13:2602-2608.
    • (2003) Genome Res. , vol.13 , pp. 2602-2608
    • Chiaromonte, F.1    Miller, W.2    Bouhassira, E.E.3
  • 3
    • 0033780450 scopus 로고    scopus 로고
    • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
    • Cohen, B. A., R. D. Mitra, J. D. Hughes, and G. M. Church. 2000. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat. Genet. 26:183-186.
    • (2000) Nat. Genet. , vol.26 , pp. 183-186
    • Cohen, B.A.1    Mitra, R.D.2    Hughes, J.D.3    Church, G.M.4
  • 4
    • 11144355642 scopus 로고    scopus 로고
    • The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome
    • Dietrich, F. S., S. Voegeli, S. Brachat et al. (14 co-authors). 2004. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science 304:304-307.
    • (2004) Science , vol.304 , pp. 304-307
    • Dietrich, F.S.1    Voegeli, S.2    Brachat, S.3
  • 5
    • 3042720475 scopus 로고    scopus 로고
    • Genome evolution in yeasts
    • Dujon, B., D. Sherman, G. Fischer et al. (67 co-authors). 2004. Genome evolution in yeasts. Nature 430:35-44.
    • (2004) Nature , vol.430 , pp. 35-44
    • Dujon, B.1    Sherman, D.2    Fischer, G.3
  • 6
    • 0037202382 scopus 로고    scopus 로고
    • Structure, function and DNA composition of Saccharomyces cerevisiae chromatin loops
    • Filipski, J., and M. Mucha. 2002. Structure, function and DNA composition of Saccharomyces cerevisiae chromatin loops. Gene 300:63-68.
    • (2002) Gene , vol.300 , pp. 63-68
    • Filipski, J.1    Mucha, M.2
  • 8
    • 1242300139 scopus 로고    scopus 로고
    • Chromatin rearrangements in the prnD-prnB bidirectional promoter: Dependence on transcription factors
    • Garcia, I., R. Gonzalez, D. Gomez, and C. Scazzocchio. 2004. Chromatin rearrangements in the prnD-prnB bidirectional promoter: dependence on transcription factors. Eukaryot. Cell 3:144-156.
    • (2004) Eukaryot. Cell , vol.3 , pp. 144-156
    • Garcia, I.1    Gonzalez, R.2    Gomez, D.3    Scazzocchio, C.4
  • 9
    • 1342288026 scopus 로고    scopus 로고
    • affy - Analysis of Affymetrix GeneChip data at the probe level
    • Gautier, L., L. Cope, B. M. Bolstad, and R. A. Irizarry. 2004. affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20:307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 10
    • 0034633494 scopus 로고    scopus 로고
    • Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae
    • USA
    • Gerton, J. L., J. DeRisi, R. Shroff, M. Lichten, P. O. Brown, and T. D. Petes. 2000. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97:11383-11390.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 11383-11390
    • Gerton, J.L.1    DeRisi, J.2    Shroff, R.3    Lichten, M.4    Brown, P.O.5    Petes, T.D.6
  • 11
    • 0346158529 scopus 로고    scopus 로고
    • Insertion-deletion biases and the evolution of genome size
    • Gregory, T. R. 2004. Insertion-deletion biases and the evolution of genome size. Gene 324:15-34.
    • (2004) Gene , vol.324 , pp. 15-34
    • Gregory, T.R.1
  • 12
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison, C. T., D. B. Gordon, T. I. Lee et al. (20 co-authors). 2004. Transcriptional regulatory code of a eukaryotic genome. Nature 431:99-104.
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1    Gordon, D.B.2    Lee, T.I.3
  • 13
    • 0036314772 scopus 로고    scopus 로고
    • Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
    • Harrison, P. M., and M. Gerstein. 2002. Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. J. Mol. Biol. 318:1155-1174.
    • (2002) J. Mol. Biol. , vol.318 , pp. 1155-1174
    • Harrison, P.M.1    Gerstein, M.2
  • 14
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • Kellis, M., B. W. Birren, and E. S. Lander. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428:617-624.
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 15
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., N. Patterson, M. Endrizzi, B. Birren, and E. S. Lander. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423:241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 16
    • 0344256533 scopus 로고    scopus 로고
    • Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
    • Kurtzman, C. P. 2003. Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res. 4:233-245.
    • (2003) FEMS Yeast Res. , vol.4 , pp. 233-245
    • Kurtzman, C.P.1
  • 17
    • 0029058555 scopus 로고
    • Transcriptional regulation in the yeast GAL gene family: A complex genetic network
    • Lohr, D., P. Venkov, and J. Zlatanova. 1995. Transcriptional regulation in the yeast GAL gene family: a complex genetic network. FASEB J. 9:777-787.
    • (1995) FASEB J. , vol.9 , pp. 777-787
    • Lohr, D.1    Venkov, P.2    Zlatanova, J.3
  • 18
    • 0037371689 scopus 로고    scopus 로고
    • Evidence for co-evolution of gene order and recombination rate
    • Pal, C., and L. D. Hurst. 2003. Evidence for co-evolution of gene order and recombination rate. Nat. Genet. 33:392-395.
    • (2003) Nat. Genet. , vol.33 , pp. 392-395
    • Pal, C.1    Hurst, L.D.2
  • 19
    • 19444377759 scopus 로고    scopus 로고
    • Transcriptional interference - A crash course
    • Shearwin, K. E., B. P. Callen, and J. B. Egan. 2005. Transcriptional interference - a crash course. Trends Genet. 21:339-345.
    • (2005) Trends Genet. , vol.21 , pp. 339-345
    • Shearwin, K.E.1    Callen, B.P.2    Egan, J.B.3
  • 20
    • 5144234337 scopus 로고    scopus 로고
    • Gene dosage balance in cellular pathways: Implications for dominance and gene duplicability
    • Veitia, R. A. 2004. Gene dosage balance in cellular pathways: implications for dominance and gene duplicability. Genetics 168:569-574.
    • (2004) Genetics , vol.168 , pp. 569-574
    • Veitia, R.A.1
  • 21
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe, K. H., and D. C. Shields. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 22
    • 22844450779 scopus 로고    scopus 로고
    • Birth of a metabolic gene cluster in yeast by adaptive gene relocation
    • Wong, S., and K. H. Wolfe. 2005. Birth of a metabolic gene cluster in yeast by adaptive gene relocation. Nat. Genet. 37:777-782.
    • (2005) Nat. Genet. , vol.37 , pp. 777-782
    • Wong, S.1    Wolfe, K.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.