-
1
-
-
0037162885
-
Whole genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S., Chapman J., Stupka E., Putnam N., Chia J.-M., Dehal P.et al. Whole genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 297:2002;1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.-M.5
Dehal, P.6
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 408:2000;796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
Genome Initiative, A.1
-
3
-
-
0034687755
-
Transposable elements in sexual and ancient asexual taxa
-
Arkhipova I., Meselson M. Transposable elements in sexual and ancient asexual taxa. Proc. Natl. Acad. Sci. U. S. A. 97:2000;14473-14477.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 14473-14477
-
-
Arkhipova, I.1
Meselson, M.2
-
4
-
-
0001207973
-
Reduced number of ribosomal sites in bats: Evidence for a mechanism to contain genome size
-
Baker R.J., Maltbie M., Owen J.G., Hamilton M.J., Bradley R.D. Reduced number of ribosomal sites in bats: evidence for a mechanism to contain genome size. J. Mammal. 73:1992;847-858.
-
(1992)
J. Mammal.
, vol.73
, pp. 847-858
-
-
Baker, R.J.1
Maltbie, M.2
Owen, J.G.3
Hamilton, M.J.4
Bradley, R.D.5
-
5
-
-
0023519294
-
Variation in genomic form in plants and its ecological implications
-
Bennett M.D. Variation in genomic form in plants and its ecological implications. New Phytol. 106(Suppl.):1987;177-200.
-
(1987)
New Phytol.
, vol.106
, Issue.SUPPL.
, pp. 177-200
-
-
Bennett, M.D.1
-
6
-
-
0033595715
-
Eukaryotic non-coding DNA is functional: Evidence from the differential scaling of cryptomonad genomes
-
Beaton M.J., Cavalier-Smith T. Eukaryotic non-coding DNA is functional: evidence from the differential scaling of cryptomonad genomes. Proc. R. Soc. Lond., B. 266:1999;2053-2059.
-
(1999)
Proc. R. Soc. Lond., B
, vol.266
, pp. 2053-2059
-
-
Beaton, M.J.1
Cavalier-Smith, T.2
-
7
-
-
0032445439
-
DNA amounts in two samples of angiosperm weeds
-
Bennett M.D., Leitch I.J., Hanson L. DNA amounts in two samples of angiosperm weeds. Ann. Bot. 82(Suppl. A):1998;121-134.
-
(1998)
Ann. Bot.
, vol.82
, Issue.SUPPL. A
, pp. 121-134
-
-
Bennett, M.D.1
Leitch, I.J.2
Hanson, L.3
-
8
-
-
0036021693
-
Mechanisms and rates of genome expansion and contraction in flowering plants
-
Bennetzen J.L. Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica. 115:2002;29-36.
-
(2002)
Genetica
, vol.115
, pp. 29-36
-
-
Bennetzen, J.L.1
-
9
-
-
0000637348
-
Do plants have a one-way ticket to genomic obesity?
-
Bennetzen J.L., Kellogg E.A. Do plants have a one-way ticket to genomic obesity? Plant Cell. 9:1997;1509-1514.
-
(1997)
Plant Cell
, vol.9
, pp. 1509-1514
-
-
Bennetzen, J.L.1
Kellogg, E.A.2
-
10
-
-
0035140685
-
Genomic gigantism: DNA loss is slow in mountain grasshoppers
-
Bensasson D., Petrov D.A., Zhang D.-X., Hartl D.L., Hewitt G.M. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Mol. Biol. Evol. 18:2001;246-253.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 246-253
-
-
Bensasson, D.1
Petrov, D.A.2
Zhang, D.-X.3
Hartl, D.L.4
Hewitt, G.M.5
-
11
-
-
0036021702
-
Expansion of genome coding region by acquisition of new genes
-
Betrán E., Long M. Expansion of genome coding region by acquisition of new genes. Genetica. 115:2002;65-80.
-
(2002)
Genetica
, vol.115
, pp. 65-80
-
-
Betrán, E.1
Long, M.2
-
12
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
Blanc G., Hokamp K., Wolfe K.H. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13:2003;137-144.
-
(2003)
Genome Res.
, vol.13
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
13
-
-
0036900274
-
Patterns of insertion and deletion in contrasting chromatin domains
-
Blumenstiel J.P., Hartl D.L., Lozovsky E.R. Patterns of insertion and deletion in contrasting chromatin domains. Mol. Biol. Evol. 19:2002;2211-2225.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2211-2225
-
-
Blumenstiel, J.P.1
Hartl, D.L.2
Lozovsky, E.R.3
-
14
-
-
0035671486
-
Patterns of genome size variation in tetraodontiform fishes
-
Brainerd E.L., Slutz S.S., Hall E.K., Phillis R.W. Patterns of genome size variation in tetraodontiform fishes. Evolution. 55:2001;2363-2368.
-
(2001)
Evolution
, vol.55
, pp. 2363-2368
-
-
Brainerd, E.L.1
Slutz, S.S.2
Hall, E.K.3
Phillis, R.W.4
-
15
-
-
0009874177
-
Genome size variation in southwestern US Indian maize populations may be a function of effective growing season
-
Bullock D., Rayburn A. Genome size variation in southwestern US Indian maize populations may be a function of effective growing season. Maydica. 36:1991;247-250.
-
(1991)
Maydica
, vol.36
, pp. 247-250
-
-
Bullock, D.1
Rayburn, A.2
-
16
-
-
0345035503
-
Intron size and natural selection
-
Carvalho A.B., Clark A.G. Intron size and natural selection. Nature. 401:1999;344.
-
(1999)
Nature
, vol.401
, pp. 344
-
-
Carvalho, A.B.1
Clark, A.G.2
-
17
-
-
0037227553
-
Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans
-
Cavalcanti A.R.O., Ferreira R., Gu Z., Li W.-H. Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans. J. Mol. Evol. 56:2003;28-37.
-
(2003)
J. Mol. Evol.
, vol.56
, pp. 28-37
-
-
Cavalcanti, A.R.O.1
Ferreira, R.2
Gu, Z.3
Li, W.-H.4
-
18
-
-
0001135142
-
Cell volume and the evolution of eukaryotic genome size
-
T. Cavalier-Smith. Chichester: John Wiley & Sons
-
Cavalier-Smith T. Cell volume and the evolution of eukaryotic genome size. Cavalier-Smith T. The Evolution of Genome Size. 1985;104-184 John Wiley & Sons, Chichester.
-
(1985)
The Evolution of Genome Size
, pp. 104-184
-
-
Cavalier-Smith, T.1
-
19
-
-
0036897998
-
Nucleomorphs: Enslaved algal nuclei
-
Cavalier-Smith T. Nucleomorphs: enslaved algal nuclei. Curr. Opin. Microbiol. 5:2002;612-619.
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 612-619
-
-
Cavalier-Smith, T.1
-
20
-
-
0033370004
-
The skeletal function of non-genic nuclear DNA: New evidence from ancient cell chimaeras
-
Cavalier-Smith T., Beaton M.J. The skeletal function of non-genic nuclear DNA: new evidence from ancient cell chimaeras. Genetica. 106:1999;3-13.
-
(1999)
Genetica
, vol.106
, pp. 3-13
-
-
Cavalier-Smith, T.1
Beaton, M.J.2
-
21
-
-
0029908769
-
The changing sizes of genes
-
Charlesworth B. The changing sizes of genes. Nature. 384:1996;315-316.
-
(1996)
Nature
, vol.384
, pp. 315-316
-
-
Charlesworth, B.1
-
23
-
-
0035895513
-
What if there are only 30,000 human genes?
-
Claverie J.-M. What if there are only 30,000 human genes? Science. 291:2000;1255-1257.
-
(2000)
Science
, vol.291
, pp. 1255-1257
-
-
Claverie, J.-M.1
-
24
-
-
0036078675
-
Fourfold faster rate of genome rearrangement in nematodes than in Drosophila
-
Coghlan A., Wolfe K.H. Fourfold faster rate of genome rearrangement in nematodes than in Drosophila. Genome Res. 16:2002;857-867.
-
(2002)
Genome Res.
, vol.16
, pp. 857-867
-
-
Coghlan, A.1
Wolfe, K.H.2
-
25
-
-
0035546066
-
What controls the length of noncoding DNA?
-
Comeron J.M. What controls the length of noncoding DNA? Curr. Opin. Genet. Dev. 11:2001;652-659.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 652-659
-
-
Comeron, J.M.1
-
26
-
-
0033767383
-
The correlation between intron length and recombination in Drosophila: Dynamic equilibrium between mutational and selective forces
-
Comeron J.M., Kreitman M. The correlation between intron length and recombination in Drosophila: dynamic equilibrium between mutational and selective forces. Genetics. 156:2000;1175-1190.
-
(2000)
Genetics
, vol.156
, pp. 1175-1190
-
-
Comeron, J.M.1
Kreitman, M.2
-
28
-
-
0037108746
-
Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome
-
Dasilva C., Hadji H., Ozouf-Costaz C., Nicaud S., Laillon O., Weissenbach J., Roest Crollius H. Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. Proc. Natl. Acad. Sci. U. S. A. 99:2002;13636-13641.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 13636-13641
-
-
Dasilva, C.1
Hadji, H.2
Ozouf-Costaz, C.3
Nicaud, S.4
Laillon, O.5
Weissenbach, J.6
Roest Crollius, H.7
-
29
-
-
0019434148
-
Causes of more frequent deletions than insertions in mutations and protein evolution
-
de Jong W.W., Rydén L. Causes of more frequent deletions than insertions in mutations and protein evolution. Nature. 290:1981;157-159.
-
(1981)
Nature
, vol.290
, pp. 157-159
-
-
De Jong, W.W.1
Rydén, L.2
-
30
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
Devos K.M., Brown J.K.M., Bennetzen J.L. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12:2002;1075-1079.
-
(2002)
Genome Res.
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.M.2
Bennetzen, J.L.3
-
31
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle W.F., Sapienza C. Selfish genes, the phenotype paradigm and genome evolution. Nature. 284:1980;601-603.
-
(1980)
Nature
, vol.284
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
32
-
-
0036021697
-
Genome deterioration: Loss of repeated sequences and accumulation of junk DNA
-
Frank A.C., Amiri H., Andersson S.G.E. Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica. 115:2002;1-12.
-
(2002)
Genetica
, vol.115
, pp. 1-12
-
-
Frank, A.C.1
Amiri, H.2
Andersson, S.G.E.3
-
33
-
-
0035081235
-
Gene duplication and the structure of eukaryotic genomes
-
Friedman R., Hughes A.L. Gene duplication and the structure of eukaryotic genomes. Genome Res. 11:2001;373-3871.
-
(2001)
Genome Res.
, vol.11
, pp. 373-3871
-
-
Friedman, R.1
Hughes, A.L.2
-
34
-
-
0038370167
-
Study on the evolution of the grande retrotransposon in the Zea genus
-
García-Martínez J., Martínez-Izquierdo J. Study on the evolution of the grande retrotransposon in the Zea genus. Mol. Biol. Evol. 20:2003;831-841.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 831-841
-
-
García-Martínez, J.1
Martínez-Izquierdo, J.2
-
35
-
-
0036213939
-
Evolutionary dynamics of grass genomes
-
Gaut B.S. Evolutionary dynamics of grass genomes. New Phytol. 154:2002;15-28.
-
(2002)
New Phytol.
, vol.154
, pp. 15-28
-
-
Gaut, B.S.1
-
36
-
-
0034888792
-
Nucleomorph genomes: Much ado about practically nothing
-
Gilson P.R. Nucleomorph genomes: much ado about practically nothing. Genome Biol. 2:2001;1002.1-1002.5.
-
(2001)
Genome Biol.
, vol.2
, pp. 10021-10025
-
-
Gilson, P.R.1
-
37
-
-
0036021692
-
Jam packed genomes - A preliminary, comparative analysis of nucleomorphs
-
Gilson P.R., McFadden G.I. Jam packed genomes - a preliminary, comparative analysis of nucleomorphs. Genetica. 115:2002;13-28.
-
(2002)
Genetica
, vol.115
, pp. 13-28
-
-
Gilson, P.R.1
McFadden, G.I.2
-
38
-
-
0036021383
-
Chromosomal elements evolve at different rates in the Drosophila genome
-
González J., Ranz J.M., Ruiz A. Chromosomal elements evolve at different rates in the Drosophila genome. Genetics. 161:2002;1137-1154.
-
(2002)
Genetics
, vol.161
, pp. 1137-1154
-
-
González, J.1
Ranz, J.M.2
Ruiz, A.3
-
39
-
-
0024505629
-
Deletions in processed pseudogenes accumulate faster in rodents than in humans
-
Graur D., Shauli Y., Li W.-H. Deletions in processed pseudogenes accumulate faster in rodents than in humans. J. Mol. Evol. 28:1989;279-285.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 279-285
-
-
Graur, D.1
Shauli, Y.2
Li, W.-H.3
-
40
-
-
0033661512
-
Nucleotypic effects without nuclei: Genome size and erythrocyte size in mammals
-
Gregory T.R. Nucleotypic effects without nuclei: genome size and erythrocyte size in mammals. Genome. 43:2000;895-901.
-
(2000)
Genome
, vol.43
, pp. 895-901
-
-
Gregory, T.R.1
-
41
-
-
0035090476
-
Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
-
Gregory T.R. Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma. Biol. Rev. 76:2001;65-101.
-
(2001)
Biol. Rev.
, vol.76
, pp. 65-101
-
-
Gregory, T.R.1
-
42
-
-
85030917876
-
-
Gregory, T.R., 2001. Animal Genome Size Database. http://www.genomesize. com .
-
(2001)
-
-
Gregory, T.R.1
-
43
-
-
0036021707
-
Genome size and developmental complexity
-
Gregory T.R. Genome size and developmental complexity. Genetica. 115:2002;131-146.
-
(2002)
Genetica
, vol.115
, pp. 131-146
-
-
Gregory, T.R.1
-
44
-
-
0036006429
-
A bird's-eye view of the C-value enigma: Genome size, cell size, and metabolic rate in the class Aves
-
Gregory T.R. A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves. Evolution. 56:2002;121-130.
-
(2002)
Evolution
, vol.56
, pp. 121-130
-
-
Gregory, T.R.1
-
45
-
-
0041828230
-
Is small indel bias a determinant of genome size?
-
Gregory T.R. Is small indel bias a determinant of genome size? Trends Genet. 19:2003;485-488.
-
(2003)
Trends Genet.
, vol.19
, pp. 485-488
-
-
Gregory, T.R.1
-
46
-
-
0038129545
-
Variation across amphibian species in the size of the nuclear genome supports a pluralistic, hierarchical approach to the C-value enigma
-
Gregory T.R. Variation across amphibian species in the size of the nuclear genome supports a pluralistic, hierarchical approach to the C-value enigma. Biol. J. Linn. Soc. 79:2003;329-339.
-
(2003)
Biol. J. Linn. Soc.
, vol.79
, pp. 329-339
-
-
Gregory, T.R.1
-
47
-
-
0034072115
-
Evolutionary implications of the relationship between genome size and body size in flatworms and copepods
-
Gregory T.R., Hebert P.D.N., Kolasa J. Evolutionary implications of the relationship between genome size and body size in flatworms and copepods. Heredity. 84:2000;201-208.
-
(2000)
Heredity
, vol.84
, pp. 201-208
-
-
Gregory, T.R.1
Hebert, P.D.N.2
Kolasa, J.3
-
48
-
-
0037327334
-
Identification of pseudogenes in the Drosophila melanogaster genome
-
Harrison P.M., Milburn D., Zhang Z., Bertone P., Gerstein M. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Res. 31:2003;1033-1037.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1033-1037
-
-
Harrison, P.M.1
Milburn, D.2
Zhang, Z.3
Bertone, P.4
Gerstein, M.5
-
49
-
-
0034332317
-
Molecular melodies in high and low C
-
Hartl D.L. Molecular melodies in high and low C. Nat. Rev., Genet. 1:2000;145-159.
-
(2000)
Nat. Rev., Genet.
, vol.1
, pp. 145-159
-
-
Hartl, D.L.1
-
50
-
-
0037162770
-
Vertebrate genomes compared
-
Hedges S.B., Kumar S. Vertebrate genomes compared. Science. 297:2002;1283-1285.
-
(2002)
Science
, vol.297
, pp. 1283-1285
-
-
Hedges, S.B.1
Kumar, S.2
-
52
-
-
0029100668
-
Small genomes for better flyers
-
Hughes A.L., Hughes M.K. Small genomes for better flyers. Nature. 377:1995;391.
-
(1995)
Nature
, vol.377
, pp. 391
-
-
Hughes, A.L.1
Hughes, M.K.2
-
53
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
54
-
-
0025910757
-
Processed pseudogenes in Drosophila
-
Jeffs P., Ashburner M. Processed pseudogenes in Drosophila. Poc. R. Soc. Lond., B. 244:1991;151-159.
-
(1991)
Poc. R. Soc. Lond., B
, vol.244
, pp. 151-159
-
-
Jeffs, P.1
Ashburner, M.2
-
55
-
-
0030910563
-
An evolutionary correlate of genome size change in plethodontid salamanders
-
Jockusch E.L. An evolutionary correlate of genome size change in plethodontid salamanders. Proc. R. Soc. Lond., B. 264:1997;597-604.
-
(1997)
Proc. R. Soc. Lond., B
, vol.264
, pp. 597-604
-
-
Jockusch, E.L.1
-
56
-
-
0034612315
-
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
-
Kalendar R., Tanskanen J., Immonen S., Nevo E., Schulman A.H. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc. Natl. Acad. Sci. U. S. A. 97:2000;6603-6607.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 6603-6607
-
-
Kalendar, R.1
Tanskanen, J.2
Immonen, S.3
Nevo, E.4
Schulman, A.H.5
-
57
-
-
0034675997
-
Species-specific double-strand break repair and genome evolution in plants
-
Kirik A., Salomon S., Puchta H. Species-specific double-strand break repair and genome evolution in plants. EMBO J. 19:2000;5562-5566.
-
(2000)
EMBO J.
, vol.19
, pp. 5562-5566
-
-
Kirik, A.1
Salomon, S.2
Puchta, H.3
-
58
-
-
0032426016
-
Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants
-
Leitch I.J., Chase M.W., Bennett M.D. Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants. Ann. Bot. 82(Suppl. A):1998;85-94.
-
(1998)
Ann. Bot.
, vol.82
, Issue.SUPPL. A
, pp. 85-94
-
-
Leitch, I.J.1
Chase, M.W.2
Bennett, M.D.3
-
59
-
-
0036277249
-
Investigating the relationship between genome structure, composition, and ecology in prokaryotes
-
Liò P. Investigating the relationship between genome structure, composition, and ecology in prokaryotes. Mol. Biol. Evol. 19:2002;789-800.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 789-800
-
-
Liò, P.1
-
60
-
-
0037350508
-
Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome
-
Liu G., NISC Comparative Sequencing Program, Zhao S., Bailey J.A., Sahinalp S.C., Alkan C., Tuzun E., Green E.D., Eichler E.E. Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. Genome Res. 13:2003;358-368.
-
(2003)
Genome Res.
, vol.13
, pp. 358-368
-
-
Liu, G.1
Comparative Sequencing Program, N.2
Zhao, S.3
Bailey, J.A.4
Sahinalp, S.C.5
Alkan, C.6
Tuzun, E.7
Green, E.D.8
Eichler, E.E.9
-
62
-
-
0004785430
-
Measurements of the genome size of the monogonont rotifer Brachionus plicatilis and of the bdelloid rotifers Philodina roseola and Habrotrocha constricta
-
Mark Welch D.B., Meselson M. Measurements of the genome size of the monogonont rotifer Brachionus plicatilis and of the bdelloid rotifers Philodina roseola and Habrotrocha constricta. Hydrobiologia. 387:1998;395-402.
-
(1998)
Hydrobiologia
, vol.387
, pp. 395-402
-
-
Mark Welch, D.B.1
Meselson, M.2
-
63
-
-
0038075529
-
Oocyte nuclear DNA content and GC proportion in rotifers of the anciently asexual Class Bdelloidea
-
Mark Welch D.B., Meselson M. Oocyte nuclear DNA content and GC proportion in rotifers of the anciently asexual Class Bdelloidea. Biol. J. Linn. Soc. 79:2003;85-91.
-
(2003)
Biol. J. Linn. Soc.
, vol.79
, pp. 85-91
-
-
Mark Welch, D.B.1
Meselson, M.2
-
64
-
-
0029107770
-
Differentiation trees, a junk DNA molecular clock, and the evolution of neoteny in salamanders
-
Martin C.C., Gordon R. Differentiation trees, a junk DNA molecular clock, and the evolution of neoteny in salamanders. J. Evol. Biol. 8:1995;339-354.
-
(1995)
J. Evol. Biol.
, vol.8
, pp. 339-354
-
-
Martin, C.C.1
Gordon, R.2
-
65
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira A., Ochman H., Moran N.A. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:2001;589-596.
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
67
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Genome Sequencing Consortium, M.1
-
68
-
-
0037767281
-
Genome size evolution in pufferfish: A comparative analysis of diodontid and tetraodontid pufferfish genomes
-
Neafsey D.E., Palumbi S.R. Genome size evolution in pufferfish: a comparative analysis of diodontid and tetraodontid pufferfish genomes. Genome Res. 13:2003;821-830.
-
(2003)
Genome Res.
, vol.13
, pp. 821-830
-
-
Neafsey, D.E.1
Palumbi, S.R.2
-
69
-
-
0015271630
-
So much "junk" DNA in our genome
-
H.H. Smith. New York: Gordon and Breach
-
Ohno S. So much "junk" DNA in our genome. Smith H.H. Evolution of Genetic Systems. 1972;366-370 Gordon and Breach, New York.
-
(1972)
Evolution of Genetic Systems
, pp. 366-370
-
-
Ohno, S.1
-
70
-
-
0031593238
-
Patterns and rates of indel evolution in processed pseudogenes from humans and murids
-
Ophir R., Graur D. Patterns and rates of indel evolution in processed pseudogenes from humans and murids. Gene. 205:1997;191-202.
-
(1997)
Gene
, vol.205
, pp. 191-202
-
-
Ophir, R.1
Graur, D.2
-
71
-
-
0037342581
-
Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: Possible implications for genome evolution
-
Orel N., Puchta H. Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution. Plant Mol. Biol. 51:2003;523-531.
-
(2003)
Plant Mol. Biol.
, vol.51
, pp. 523-531
-
-
Orel, N.1
Puchta, H.2
-
72
-
-
0018857680
-
Selfish DNA: The ultimate parasite
-
Orgel L.E., Crick F.H.C. Selfish DNA: the ultimate parasite. Nature. 284:1980;604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.C.2
-
73
-
-
0026703046
-
Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox
-
Pagel M., Johnstone R.A. Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox. Proc. R. Soc. Lond., B. 249:1992;119-124.
-
(1992)
Proc. R. Soc. Lond., B
, vol.249
, pp. 119-124
-
-
Pagel, M.1
Johnstone, R.A.2
-
74
-
-
0000847389
-
Slow but steady: Reduction of genome size through biased mutation
-
Petrov D. Slow but steady: reduction of genome size through biased mutation. Plant Cell. 9:1997;1900-1901.
-
(1997)
Plant Cell
, vol.9
, pp. 1900-1901
-
-
Petrov, D.1
-
75
-
-
0035058360
-
Evolution of genome size: New approaches to an old problem
-
Petrov D.A. Evolution of genome size: new approaches to an old problem. Trends Genet. 17:2001;23-28.
-
(2001)
Trends Genet.
, vol.17
, pp. 23-28
-
-
Petrov, D.A.1
-
76
-
-
0345070506
-
Mutational equilibrium model of genome size evolution
-
Petrov D.A. Mutational equilibrium model of genome size evolution. Theor. Popul. Biol. 61:2002;533-546.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 533-546
-
-
Petrov, D.A.1
-
77
-
-
0036021703
-
DNA loss and evolution of genome size in Drosophila
-
Petrov D.A. DNA loss and evolution of genome size in Drosophila. Genetica. 115:2002;81-91.
-
(2002)
Genetica
, vol.115
, pp. 81-91
-
-
Petrov, D.A.1
-
78
-
-
0031593162
-
Trash DNA is what gets thrown away: High rate of DNA loss in Drosophila
-
Petrov D.A., Hartl D.L. Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila. Gene. 205:1997;279-289.
-
(1997)
Gene
, vol.205
, pp. 279-289
-
-
Petrov, D.A.1
Hartl, D.L.2
-
79
-
-
0031891484
-
High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
-
Petrov D.A., Hartl D.L. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol. Biol. Evol. 15:1998;293-302.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 293-302
-
-
Petrov, D.A.1
Hartl, D.L.2
-
80
-
-
0034064945
-
Pseudogene evolution and natural selection for a compact genome
-
Petrov D.A., Hartl D.L. Pseudogene evolution and natural selection for a compact genome. J. Heredity. 91:2000;221-227.
-
(2000)
J. Heredity
, vol.91
, pp. 221-227
-
-
Petrov, D.A.1
Hartl, D.L.2
-
81
-
-
0029856377
-
High intrinsic rate of DNA loss in Drosophila
-
Petrov D.A., Lozovskaya E.R., Hartl D.L. High intrinsic rate of DNA loss in Drosophila. Nature. 384:1996;346-349.
-
(1996)
Nature
, vol.384
, pp. 346-349
-
-
Petrov, D.A.1
Lozovskaya, E.R.2
Hartl, D.L.3
-
82
-
-
0034635568
-
Evidence for DNA loss as a determinant of genome size
-
Petrov D.A., Sangster T.A., Johnston J.S., Hartl D.L., Shaw K.L. Evidence for DNA loss as a determinant of genome size. Science. 287:2000;1060-1062.
-
(2000)
Science
, vol.287
, pp. 1060-1062
-
-
Petrov, D.A.1
Sangster, T.A.2
Johnston, J.S.3
Hartl, D.L.4
Shaw, K.L.5
-
83
-
-
0032432586
-
Genome size and environmental correlations in maize (Zea mays ssp. mays, Poaceae)
-
Poggio L., Rosato M., Chiavarino A.M., Naranjo C.A. Genome size and environmental correlations in maize (Zea mays ssp. mays, Poaceae). Ann. Bot. 82(Suppl. A):1998;107-115.
-
(1998)
Ann. Bot.
, vol.82
, Issue.SUPPL. A
, pp. 107-115
-
-
Poggio, L.1
Rosato, M.2
Chiavarino, A.M.3
Naranjo, C.A.4
-
84
-
-
0036862056
-
How intron splicing affects the deletion and insertion profile in Drosophila melanogaster
-
Ptak S.E., Petrov D.A. How intron splicing affects the deletion and insertion profile in Drosophila melanogaster. Genetics. 162:2002;1233-1244.
-
(2002)
Genetics
, vol.162
, pp. 1233-1244
-
-
Ptak, S.E.1
Petrov, D.A.2
-
85
-
-
0033865557
-
Are obese plant genomes on a diet?
-
Rabinowicz P.D. Are obese plant genomes on a diet? Genome Res. 10:2000;893-894.
-
(2000)
Genome Res.
, vol.10
, pp. 893-894
-
-
Rabinowicz, P.D.1
-
86
-
-
0035101024
-
How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila
-
Ranz J.M., Casals F., Ruiz A. How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila. Genome Res. 11:2001;230-239.
-
(2001)
Genome Res.
, vol.11
, pp. 230-239
-
-
Ranz, J.M.1
Casals, F.2
Ruiz, A.3
-
87
-
-
0000865637
-
Genome size variation in Zea mays ssp. mays adapted to different altitudes
-
Rayburn A.L., Auger J.A. Genome size variation in Zea mays ssp. mays adapted to different altitudes. Theor. Appl. Genet. 79:1990;470-474.
-
(1990)
Theor. Appl. Genet.
, vol.79
, pp. 470-474
-
-
Rayburn, A.L.1
Auger, J.A.2
-
89
-
-
0034049664
-
The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses
-
Robertson H.M. The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses. Genome Res. 10:2000;192-203.
-
(2000)
Genome Res.
, vol.10
, pp. 192-203
-
-
Robertson, H.M.1
-
90
-
-
0031184378
-
Genome size, secondary simplification, and the evolution of the brain in salamanders
-
Roth G., Nishikawa K.C., Wake D.B. Genome size, secondary simplification, and the evolution of the brain in salamanders. Brain Behav. Evol. 50:1997;50-59.
-
(1997)
Brain Behav. Evol.
, vol.50
, pp. 50-59
-
-
Roth, G.1
Nishikawa, K.C.2
Wake, D.B.3
-
91
-
-
0032413101
-
Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
-
SanMiguel P., Bennetzen J.L. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82(Suppl. A):1998;37-44.
-
(1998)
Ann. Bot.
, vol.82
, Issue.SUPPL. A
, pp. 37-44
-
-
Sanmiguel, P.1
Bennetzen, J.L.2
-
92
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
SanMiguel P., Gaut B.S., Tikhonov A., Nakajima Y., Bennetzen J.L. The paleontology of intergene retrotransposons of maize. Nat. Genet. 20:1998;43-45.
-
(1998)
Nat. Genet.
, vol.20
, pp. 43-45
-
-
Sanmiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
93
-
-
0033736054
-
Drosophila virilis has long and highly polymorphic microsatellites
-
Schlötterer C., Harr B. Drosophila virilis has long and highly polymorphic microsatellites. Mol. Biol. Evol. 17:2000;1641-1646.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1641-1646
-
-
Schlötterer, C.1
Harr, B.2
-
94
-
-
0035283304
-
Reducing the genome size of organelles favours gene transfer to the nucleus
-
Selosse M.-A., Albert B., Godelle B. Reducing the genome size of organelles favours gene transfer to the nucleus. Trends Ecol. Evol. 16:2001;135-141.
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 135-141
-
-
Selosse, M.-A.1
Albert, B.2
Godelle, B.3
-
95
-
-
0032953158
-
Gene duplication and gene conversion in the Caenorhabditis elegans genome
-
Semple C., Wolfe K.H. Gene duplication and gene conversion in the Caenorhabditis elegans genome. J. Mol. Evol. 48:1999;555-564.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 555-564
-
-
Semple, C.1
Wolfe, K.H.2
-
96
-
-
0033852426
-
A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
-
Shirasu K., Schulman A.H., Lahaye T., Schulze-Lefert P. A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res. 10:2000;908-915.
-
(2000)
Genome Res.
, vol.10
, pp. 908-915
-
-
Shirasu, K.1
Schulman, A.H.2
Lahaye, T.3
Schulze-Lefert, P.4
-
97
-
-
0021066804
-
Phenotypic correlates of genomic DNA content in unicellular eukaryotes and other cells
-
Shuter B.J., Thomas J.E., Taylor W.D., Zimmerman A.M. Phenotypic correlates of genomic DNA content in unicellular eukaryotes and other cells. Am. Nat. 122:1983;26-44.
-
(1983)
Am. Nat.
, vol.122
, pp. 26-44
-
-
Shuter, B.J.1
Thomas, J.E.2
Taylor, W.D.3
Zimmerman, A.M.4
-
98
-
-
0037109058
-
The hidden duplication past of Arabidopsis thaliana
-
Simillion C., Vanepoele K., Van Montagu M.C.E., Zabeau M., Van de Peer Y. The hidden duplication past of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 99:2002;13627-13632.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 13627-13632
-
-
Simillion, C.1
Vanepoele, K.2
Van Montagu, M.C.E.3
Zabeau, M.4
Van De Peer, Y.5
-
99
-
-
0035233856
-
Reduction of bacterial genome size and expansion resulting from obligate intracellular lifestyle and adaptation to soil habitat
-
Stepkowski T., Legocki A.B. Reduction of bacterial genome size and expansion resulting from obligate intracellular lifestyle and adaptation to soil habitat. Acta Biochim. Pol. 48:2001;367-381.
-
(2001)
Acta Biochim. Pol.
, vol.48
, pp. 367-381
-
-
Stepkowski, T.1
Legocki, A.B.2
-
100
-
-
0000822856
-
The genetic organization of chromosomes
-
Thomas C.A. The genetic organization of chromosomes. Annu. Rev. Genet. 5:1971;237-256.
-
(1971)
Annu. Rev. Genet.
, vol.5
, pp. 237-256
-
-
Thomas, C.A.1
-
101
-
-
84987553948
-
Estimation of cell size and DNA content in fossil fishes and amphibians
-
Thomson K.S., Muraszko K. Estimation of cell size and DNA content in fossil fishes and amphibians. J. Exp. Zool. 205:1978;315-320.
-
(1978)
J. Exp. Zool.
, vol.205
, pp. 315-320
-
-
Thomson, K.S.1
Muraszko, K.2
-
102
-
-
0033493358
-
Genome size variation in Hordeum spontaneum populations
-
Turpeinen T., Kulmala J., Nevo E. Genome size variation in Hordeum spontaneum populations. Genome. 42:1999;1094-1099.
-
(1999)
Genome
, vol.42
, pp. 1094-1099
-
-
Turpeinen, T.1
Kulmala, J.2
Nevo, E.3
-
103
-
-
0012924875
-
Copia-like retrotransposons in the rice genome: Few and assorted
-
Vicient C.M., Schulman A.H. Copia-like retrotransposons in the rice genome: few and assorted. Genome Lett. 1:2002;35-47.
-
(2002)
Genome Lett.
, vol.1
, pp. 35-47
-
-
Vicient, C.M.1
Schulman, A.H.2
-
104
-
-
0032718558
-
Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
-
Vicient C.M., Suoniemi A., Anamthawat-Jónsson K., Tanskanen J., Beharev A., Nevo E., Schulman A.H. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell. 11:1999;1769-1784.
-
(1999)
Plant Cell
, vol.11
, pp. 1769-1784
-
-
Vicient, C.M.1
Suoniemi, A.2
Anamthawat-Jónsson, K.3
Tanskanen, J.4
Beharev, A.5
Nevo, E.6
Schulman, A.H.7
-
105
-
-
0033290999
-
Structure, functionality, and evolution of the BARE-1 retrotransposon of barley
-
Vicient C.M., Kalendar R., Anamthawat-Jónsson K., Suoniemi A., Schulman A.H. Structure, functionality, and evolution of the BARE-1 retrotransposon of barley. Genetica. 107:1999;53-63.
-
(1999)
Genetica
, vol.107
, pp. 53-63
-
-
Vicient, C.M.1
Kalendar, R.2
Anamthawat-Jónsson, K.3
Suoniemi, A.4
Schulman, A.H.5
-
106
-
-
0035986886
-
Evolution of genome size in Drosophila. Is the invader's genome being invaded by transposable elements?
-
Vieira C., Nardon C., Arpin C., Lepetit D., Biémont C. Evolution of genome size in Drosophila. Is the invader's genome being invaded by transposable elements? Mol. Biol. Evol. 19:2002;1154-1161.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1154-1161
-
-
Vieira, C.1
Nardon, C.2
Arpin, C.3
Lepetit, D.4
Biémont, C.5
-
107
-
-
0029200089
-
Nucleotypic effect in homeotherms: Body mass-corrected basal metabolic rate of mammals is related to genome size
-
Vinogradov A.E. Nucleotypic effect in homeotherms: body mass-corrected basal metabolic rate of mammals is related to genome size. Evolution. 49:1995;1249-1259.
-
(1995)
Evolution
, vol.49
, pp. 1249-1259
-
-
Vinogradov, A.E.1
-
108
-
-
0037387430
-
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
-
Vitte C., Panaud O. Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L. Mol. Biol. Evol. 20:2003;528-540.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 528-540
-
-
Vitte, C.1
Panaud, O.2
-
109
-
-
0036574856
-
Growth and decline of introns
-
Vinogradov A.E. Growth and decline of introns. Trends Genet. 18:2002;232-236.
-
(2002)
Trends Genet.
, vol.18
, pp. 232-236
-
-
Vinogradov, A.E.1
-
110
-
-
0033521907
-
UV-B damage amplified by transposons in maize
-
Walbot V. UV-B damage amplified by transposons in maize. Nature. 397:1999;398-399.
-
(1999)
Nature
, vol.397
, pp. 398-399
-
-
Walbot, V.1
-
111
-
-
0036841106
-
Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs
-
Waltari E., Edwards S.V. Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs. Am. Nat. 160:2002;539-552.
-
(2002)
Am. Nat.
, vol.160
, pp. 539-552
-
-
Waltari, E.1
Edwards, S.V.2
-
112
-
-
0033147817
-
Chromosomal evolution in the genus Brachyscome (Asteraceae, Astereae): Statistical tests regarding correlation between changes in karyotype and habit using phylogenetic information
-
Watanabe K., Yahara T., Denda T., Kosuge K. Chromosomal evolution in the genus Brachyscome (Asteraceae, Astereae): statistical tests regarding correlation between changes in karyotype and habit using phylogenetic information. J. Plant Res. 112:1999;145-161.
-
(1999)
J. Plant Res.
, vol.112
, pp. 145-161
-
-
Watanabe, K.1
Yahara, T.2
Denda, T.3
Kosuge, K.4
-
114
-
-
0036897696
-
Intron size and genome size in plants
-
Wendel J.F., Cronn R.C., Alvarez I., Liu B., Small R.L., Senchina D.S. Intron size and genome size in plants. Mol. Biol. Evol. 19:2002;2346-2352.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2346-2352
-
-
Wendel, J.F.1
Cronn, R.C.2
Alvarez, I.3
Liu, B.4
Small, R.L.5
Senchina, D.S.6
-
115
-
-
0342471936
-
Relations between growth rate, cell size, and DNA content in colpodean ciliates (Ciliophora: Colpodea)
-
Wickham S.A., Lynn D.H. Relations between growth rate, cell size, and DNA content in colpodean ciliates (Ciliophora: Colpodea). Eur. J. Protistol. 25:1990;345-352.
-
(1990)
Eur. J. Protistol.
, vol.25
, pp. 345-352
-
-
Wickham, S.A.1
Lynn, D.H.2
-
116
-
-
0000378875
-
Evidence for higher rates of nucleotide substitution in rodents than in man
-
Wu C.-I., Li W.-H. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. U. S. A. 82:1985;1741-1745.
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 1741-1745
-
-
Wu, C.-I.1
Li, W.-H.2
|