-
1
-
-
0035865070
-
To a future of genetic medicine
-
Chakravarti A: To a future of genetic medicine. Nature 2001, 409:822-823.
-
(2001)
Nature
, vol.409
, pp. 822-823
-
-
Chakravarti, A.1
-
2
-
-
15044364239
-
Regulatory polymorphisms underlying complex disease traits
-
Knight JC: Regulatory polymorphisms underlying complex disease traits. J Mol Med 2005, 83:97-109.
-
(2005)
J Mol Med
, vol.83
, pp. 97-109
-
-
Knight, J.C.1
-
3
-
-
24644466927
-
Single nucleotide polymorphism in transcriptional regulatory regions and expression of environmentally responsive genes
-
Wang X, Tomso DJ, Liu X, Bell DA: Single nucleotide polymorphism in transcriptional regulatory regions and expression of environmentally responsive genes. Toxicol Appl Pharmacol 2005, 207:84-90.
-
(2005)
Toxicol Appl Pharmacol
, vol.207
, pp. 84-90
-
-
Wang, X.1
Tomso, D.J.2
Liu, X.3
Bell, D.A.4
-
4
-
-
7444235907
-
Cis-acting regulatory variation in the human genome
-
Pastinen T, Hudson TJ: Cis-acting regulatory variation in the human genome. Science 2004, 306:647-650.
-
(2004)
Science
, vol.306
, pp. 647-650
-
-
Pastinen, T.1
Hudson, T.J.2
-
5
-
-
5444256188
-
Allele-specific gene expression differences in humans
-
Spec No 2
-
Buckland PR: Allele-specific gene expression differences in humans. Hum Mol Genet 2004, 13 Spec No 2:R255-60.
-
(2004)
Hum Mol Genet
, vol.13
-
-
Buckland, P.R.1
-
6
-
-
22844446947
-
An integrative genomics approach to infer causal associations between gene expression and disease
-
Schadt EE, Lamb J, Yang X, Zhu J, Edwards S, Guhathakurta D, Sieberts SK, Monks S, Reitman M, Zhang C, Lum PY, Leonardson A, Thieringer R, Metzger JM, Yang L, Castle J, Zhu H, Kash SF, Drake TA, Sachs A, Lusis AJ: An integrative genomics approach to infer causal associations between gene expression and disease. Nat Genet 2005, 37:710-717.
-
(2005)
Nat Genet
, vol.37
, pp. 710-717
-
-
Schadt, E.E.1
Lamb, J.2
Yang, X.3
Zhu, J.4
Edwards, S.5
Guhathakurta, D.6
Sieberts, S.K.7
Monks, S.8
Reitman, M.9
Zhang, C.10
Lum, P.Y.11
Leonardson, A.12
Thieringer, R.13
Metzger, J.M.14
Yang, L.15
Castle, J.16
Zhu, H.17
Kash, S.F.18
Drake, T.A.19
Sachs, A.20
Lusis, A.J.21
more..
-
7
-
-
20144377218
-
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
-
Hubner N, Wallace CA, Zimdahl H, Petretto E, Schulz H, Maciver F, Mueller M, Hummel O, Monti J, Zidek V, Musilova A, Kren V, Causton H, Game L, Born G, Schmidt S, Muller A, Cook SA, Kurtz TW, Whittaker J, Pravenec M, Aitman TJ: Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat Genet 2005, 37:243-253.
-
(2005)
Nat Genet
, vol.37
, pp. 243-253
-
-
Hubner, N.1
Wallace, C.A.2
Zimdahl, H.3
Petretto, E.4
Schulz, H.5
Maciver, F.6
Mueller, M.7
Hummel, O.8
Monti, J.9
Zidek, V.10
Musilova, A.11
Kren, V.12
Causton, H.13
Game, L.14
Born, G.15
Schmidt, S.16
Muller, A.17
Cook, S.A.18
Kurtz, T.W.19
Whittaker, J.20
Pravenec, M.21
Aitman, T.J.22
more..
-
8
-
-
20144383240
-
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
-
Bystrykh L, Weersing E, Dontje B, Sutton S, Pletcher MT, Wiltshire T, Su Al, Vellenga E, Wang J, Manly KF, Lu L, Chesler EJ, Alberts R, Jansen RC, Williams RW, Cooke MP, de Haan G: Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nat Genet 2005, 37:225-232.
-
(2005)
Nat Genet
, vol.37
, pp. 225-232
-
-
Bystrykh, L.1
Weersing, E.2
Dontje, B.3
Sutton, S.4
Pletcher, M.T.5
Wiltshire, T.6
Su, A.L.7
Vellenga, E.8
Wang, J.9
Manly, K.F.10
Lu, L.11
Chesler, E.J.12
Alberts, R.13
Jansen, R.C.14
Williams, R.W.15
Cooke, M.P.16
de Haan, G.17
-
9
-
-
0036843938
-
Detection of regulatory variation in mouse genes
-
Cowles CR, Hirschhorn JN, Altshuler D, Lander ES: Detection of regulatory variation in mouse genes. Nat Genet 2002, 32:432-437.
-
(2002)
Nat Genet
, vol.32
, pp. 432-437
-
-
Cowles, C.R.1
Hirschhorn, J.N.2
Altshuler, D.3
Lander, E.S.4
-
10
-
-
0037456823
-
Genetics of gene expression surveyed in maize, mouse and man
-
Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, Colinayo V, Ruff TG, Milligan SB, Lamb JR, Cavet G, Linsley PS, Mao M, Stoughton RB, Friend SH: Genetics of gene expression surveyed in maize, mouse and man. Nature 2003, 422:297-302.
-
(2003)
Nature
, vol.422
, pp. 297-302
-
-
Schadt, E.E.1
Monks, S.A.2
Drake, T.A.3
Lusis, A.J.4
Che, N.5
Colinayo, V.6
Ruff, T.G.7
Milligan, S.B.8
Lamb, J.R.9
Cavet, G.10
Linsley, P.S.11
Mao, M.12
Stoughton, R.B.13
Friend, S.H.14
-
11
-
-
19844366096
-
Cis-acting expression quantitative trait loci in mice
-
Doss S, Schadt EE, Drake TA, Lusis AJ: Cis-acting expression quantitative trait loci in mice. Genome Res 2005, 15:681-691.
-
(2005)
Genome Res
, vol.15
, pp. 681-691
-
-
Doss, S.1
Schadt, E.E.2
Drake, T.A.3
Lusis, A.J.4
-
13
-
-
0033772073
-
Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus
-
Horikawa Y, Oda N, Cox NJ, Li X, Orho-Melander M, Hara M, Hinokio Y, Lindner TH, Mashima H, Schwarz PE, del Bosque-Plata L, Oda Y, Yoshiuchi I, Colilla S, Polonsky KS, Wei S, Concannon P, Iwasaki N, Schulze J, Baier LJ, Bogardus C, Groop L, Boerwinkle E, Hanis CL, Bell GI: Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus. Nat Genet 2000, 26:163-175.
-
(2000)
Nat Genet
, vol.26
, pp. 163-175
-
-
Horikawa, Y.1
Oda, N.2
Cox, N.J.3
Li, X.4
Orho-Melander, M.5
Hara, M.6
Hinokio, Y.7
Lindner, T.H.8
Mashima, H.9
Schwarz, P.E.10
del Bosque-Plata, L.11
Oda, Y.12
Yoshiuchi, I.13
Colilla, S.14
Polonsky, K.S.15
Wei, S.16
Concannon, P.17
Iwasaki, N.18
Schulze, J.19
Baier, L.J.20
Bogardus, C.21
Groop, L.22
Boerwinkle, E.23
Hanis, C.L.24
Bell, G.I.25
more..
-
14
-
-
0141819194
-
The gene encoding phosphodiesterase 4D confers risk of ischemic stroke
-
Gretarsdottir S, Thorleifsson G, Reynisdottir ST, Manolescu A, Jonsdottir S, Jonsdottir T, Gudmundsdottir T, Bjarnadottir SM, Einarsson OB, Gudjonsdottir HM, Hawkins M, Gudmundsson G, Gudmundsdottir H, Andrason H, Gudmundsdottir AS, Sigurdardottir M, Chou TT, Nahmias J, Goss S, Sveinbjornsdottir S, Valdimarsson EM, Jakobsson F, Agnarsson U, Gudnason V, Thorgeirsson G, Fingerle J, Gurney M, Gudbjartsson D, Frigge ML, Kong A, Stefansson K, Gulcher JR: The gene encoding phosphodiesterase 4D confers risk of ischemic stroke. Nat Genet 2003, 35:131-138.
-
(2003)
Nat Genet
, vol.35
, pp. 131-138
-
-
Gretarsdottir, S.1
Thorleifsson, G.2
Reynisdottir, S.T.3
Manolescu, A.4
Jonsdottir, S.5
Jonsdottir, T.6
Gudmundsdottir, T.7
Bjarnadottir, S.M.8
Einarsson, O.B.9
Gudjonsdottir, H.M.10
Hawkins, M.11
Gudmundsson, G.12
Gudmundsdottir, H.13
Andrason, H.14
Gudmundsdottir, A.S.15
Sigurdardottir, M.16
Chou, T.T.17
Nahmias, J.18
Goss, S.19
Sveinbjornsdottir, S.20
Valdimarsson, E.M.21
Jakobsson, F.22
Agnarsson, U.23
Gudnason, V.24
Thorgeirsson, G.25
Fingerle, J.26
Gurney, M.27
Gudbjartsson, D.28
Frigge, M.L.29
Kong, A.30
Stefansson, K.31
Gulcher, J.R.32
more..
-
15
-
-
0345876776
-
Genetic loci determining bone density in mice with diet-induced atherosclerosis
-
Drake TA, Schadt E, Hannani K, Kabo JM, Krass K, Colinayo V, Greaser LE, Goldin J, Lusis AJ: Genetic loci determining bone density in mice with diet-induced atherosclerosis. Physiol Genomics 2001, 5:205-215.
-
(2001)
Physiol Genomics
, vol.5
, pp. 205-215
-
-
Drake, T.A.1
Schadt, E.2
Hannani, K.3
Kabo, J.M.4
Krass, K.5
Colinayo, V.6
Greaser, L.E.7
Goldin, J.8
Lusis, A.J.9
-
16
-
-
33645770040
-
Genetic and Genomic Analysis of a Fat Mass Trait with Complex Inheritance Reveals Marked Sex Specificity
-
Wang S, Yehya N, Schadt EE, Wang H, Drake TA, Lusis AJ: Genetic and Genomic Analysis of a Fat Mass Trait with Complex Inheritance Reveals Marked Sex Specificity. PLoS Genet 2006, 2:e15.
-
(2006)
PLoS Genet
, vol.2
-
-
Wang, S.1
Yehya, N.2
Schadt, E.E.3
Wang, H.4
Drake, T.A.5
Lusis, A.J.6
-
17
-
-
0024508964
-
Mapping mendelian factors underlying quantitative traits using RFLP linkage maps
-
Lander ES, Botstein D: Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 1989, 121:185-199.
-
(1989)
Genetics
, vol.121
, pp. 185-199
-
-
Lander, E.S.1
Botstein, D.2
-
18
-
-
4444329913
-
Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genome
-
Frazer KA, Wade CM, Hinds DA, Patil N, Cox DR, Daly MJ: Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genome. Genome Res 2004, 14:1493-1500.
-
(2004)
Genome Res
, vol.14
, pp. 1493-1500
-
-
Frazer, K.A.1
Wade, C.M.2
Hinds, D.A.3
Patil, N.4
Cox, D.R.5
Daly, M.J.6
-
19
-
-
23244441610
-
Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels
-
Cervino AC, Li G, Edwards S, Zhu J, Laurie C, Tokiwa G, Lum PY, Wang S, Castellini LW, Lusis AJ, Carlson S, Sachs AB, Schadt EE: Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels. Genomics 2005, 86:505-517.
-
(2005)
Genomics
, vol.86
, pp. 505-517
-
-
Cervino, A.C.1
Li, G.2
Edwards, S.3
Zhu, J.4
Laurie, C.5
Tokiwa, G.6
Lum, P.Y.7
Wang, S.8
Castellini, L.W.9
Lusis, A.J.10
Carlson, S.11
Sachs, A.B.12
Schadt, E.E.13
-
20
-
-
0037204994
-
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
-
Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, Deng Z, Evangelista CC, Gan W, Heiman TJ, Li J, Li Z, Merkulov GV, Milshina NV, Naik AK, Qi R, Shue BC, Wang A, Wang J, Wang X, Yan X, Ye J, Yooseph S, Zhao Q, Zheng L, Zhu SC, Biddick K, Bolanos R, Delcher AL, Dew IM, Fasulo D, Flanigan MJ, Huson DH, Kravitz SA, Miller JR, Mobarry CM, Reinert K, Remington KA, Zhang Q, Zheng XH, Nusskern DR, Lai Z, Lei Y, Zhong W, Yao A, Guan P, Ji RR, Gu Z, Wang ZY, Zhong F, Xiao C, Chiang CC, Yandell M, Wortman JR, Amanatides PG, Hladun SL, Pratts EC, Johnson JE, Dodson KL, Woodford KJ, Evans CA, Gropman B, Rusch DB, Venter E, Wang M, Smith TJ, Houck JT, Tompkins DE, Haynes C, Jacob D, Chin SH, Allen DR, Dahlke CE, Sanders R, Li K, Liu X, Levitsky AA, Majoros WH, Chen Q, Xia AC, Lopez JR, Donnelly MT, Newman MH, Glodek A, Kraft CL, Nodell M, Ali F, An HJ, Baldwin-Pitts D, Beeson KY, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science 2002, 296:1661-1671.
-
(2002)
Science
, vol.296
, pp. 1661-1671
-
-
Mural, R.J.1
Adams, M.D.2
Myers, E.W.3
Smith, H.O.4
Miklos, G.L.5
Wides, R.6
Halpern, A.7
Li, P.W.8
Sutton, G.G.9
Nadeau, J.10
Salzberg, S.L.11
Holt, R.A.12
Kodira, C.D.13
Lu, F.14
Chen, L.15
Deng, Z.16
Evangelista, C.C.17
Gan, W.18
Heiman, T.J.19
Li, J.20
Li, Z.21
Merkulov, G.V.22
Milshina, N.V.23
Naik, A.K.24
Qi, R.25
Shue, B.C.26
Wang, A.27
Wang, J.28
Wang, X.29
Yan, X.30
Ye, J.31
Yooseph, S.32
Zhao, Q.33
Zheng, L.34
Zhu, S.C.35
Biddick, K.36
Bolanos, R.37
Delcher, A.L.38
Dew, I.M.39
Fasulo, D.40
Flanigan, M.J.41
Huson, D.H.42
Kravitz, S.A.43
Miller, J.R.44
Mobarry, C.M.45
Reinert, K.46
Remington, K.A.47
Zhang, Q.48
Zheng, X.H.49
Nusskern, D.R.50
Lai, Z.51
Lei, Y.52
Zhong, W.53
Yao, A.54
Guan, P.55
Ji, R.R.56
Gu, Z.57
Wang, Z.Y.58
Zhong, F.59
Xiao, C.60
Chiang, C.C.61
Yandell, M.62
Wortman, J.R.63
Amanatides, P.G.64
Hladun, S.L.65
Pratts, E.C.66
Johnson, J.E.67
Dodson, K.L.68
Woodford, K.J.69
Evans, C.A.70
Gropman, B.71
Rusch, D.B.72
Venter, E.73
Wang, M.74
Smith, T.J.75
Houck, J.T.76
Tompkins, D.E.77
Haynes, C.78
Jacob, D.79
Chin, S.H.80
Allen, D.R.81
Dahlke, C.E.82
Sanders, R.83
Li, K.84
Liu, X.85
Levitsky, A.A.86
Majoros, W.H.87
Chen, Q.88
Xia, A.C.89
Lopez, J.R.90
Donnelly, M.T.91
Newman, M.H.92
Glodek, A.93
Kraft, C.L.94
Nodell, M.95
Ali, F.96
An, H.J.97
Baldwin-Pitts, D.98
Beeson, K.Y.99
more..
-
21
-
-
84872261928
-
-
http://www.ncbi.nlm.nih.gov/projects/SNP/:.
-
-
-
-
22
-
-
0032703998
-
d2_cluster: A validated method for clustering EST and full-length cDNAsequences
-
Burke J, Davison D, Hide W: d2_cluster: a validated method for clustering EST and full-length cDNAsequences. Genome Res 1999, 9:1135-1142.
-
(1999)
Genome Res
, vol.9
, pp. 1135-1142
-
-
Burke, J.1
Davison, D.2
Hide, W.3
-
23
-
-
12344302543
-
A comprehensive transcript index of the human genome generated using microarrays; and computational approaches
-
Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, Kasarskis A, Margarint M, Caceres RM, Johnson JM, Armour CD, Garrett-Engele PW, Tsinoremas NF, Shoemaker DD: A comprehensive transcript index of the human genome generated using microarrays; and computational approaches. Genome Biol 2004, 5:R73.
-
(2004)
Genome Biol
, vol.5
-
-
Schadt, E.E.1
Edwards, S.W.2
GuhaThakurta, D.3
Holder, D.4
Ying, L.5
Svetnik, V.6
Leonardson, A.7
Hart, K.W.8
Russell, A.9
Li, G.10
Cavet, G.11
Castle, J.12
McDonagh, P.13
Kan, Z.14
Chen, R.15
Kasarskis, A.16
Margarint, M.17
Caceres, R.M.18
Johnson, J.M.19
Armour, C.D.20
Garrett-Engele, P.W.21
Tsinoremas, N.F.22
Shoemaker, D.D.23
more..
-
24
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, Brubaker S, Tammana H, Helt G, Struhl K, Gingeras TR: Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 2004, 116:499-509.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
Piccolboni, A.7
Sementchenko, V.8
Cheng, J.9
Williams, A.J.10
Wheeler, R.11
Wong, B.12
Drenkow, J.13
Yamanaka, M.14
Patel, S.15
Brubaker, S.16
Tammana, H.17
Helt, G.18
Struhl, K.19
Gingeras, T.R.20
more..
-
25
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W, Rubin EM, Frazer KA: Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 2000, 288:136-140.
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
26
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE: Human-mouse genome comparisons to locate regulatory sites. Nat Genet 2000, 26:225-228.
-
(2000)
Nat Genet
, vol.26
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
27
-
-
18344415808
-
Distinguishing regulatory DNA from neutral sites
-
Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F: Distinguishing regulatory DNA from neutral sites. Genome Res 2003, 13:64-72.
-
(2003)
Genome Res
, vol.13
, pp. 64-72
-
-
Elnitski, L.1
Hardison, R.C.2
Li, J.3
Yang, S.4
Kolbe, D.5
Eswara, P.6
O'Connor, M.J.7
Schwartz, S.8
Miller, W.9
Chiaromonte, F.10
-
28
-
-
0041903634
-
Identification of conserved regulatory elements by comparative genome analysis
-
Lenhard B, Sandelin A, Mendoza L, Engstrom P, Jareborg N, Wasserman WW: Identification of conserved regulatory elements by comparative genome analysis. J Biol 2003, 2:13.
-
(2003)
J Biol
, vol.2
, pp. 13
-
-
Lenhard, B.1
Sandelin, A.2
Mendoza, L.3
Engstrom, P.4
Jareborg, N.5
Wasserman, W.W.6
-
29
-
-
0344153727
-
Genomic regulatory regions: Insights from comparative sequence analysis
-
Cooper GM, Sidow A: Genomic regulatory regions: insights from comparative sequence analysis. Curr Opin Genet Dev 2003, 13:604-610.
-
(2003)
Curr Opin Genet Dev
, vol.13
, pp. 604-610
-
-
Cooper, G.M.1
Sidow, A.2
-
30
-
-
0034783060
-
Enrichment of regulatory signals in conserved non-coding genomic sequence
-
Levy S, Hennenhalli S, Workman C: Enrichment of regulatory signals in conserved non-coding genomic sequence. Bioinformatics 2001, 17:871-877.
-
(2001)
Bioinformatics
, vol.17
, pp. 871-877
-
-
Levy, S.1
Hennenhalli, S.2
Workman, C.3
-
31
-
-
0037250168
-
The UCSC Genome Browser Database
-
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ: The UCSC Genome Browser Database. Nucleic Acids Res 2003, 31:51-54.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
Weber, R.J.11
Haussler, D.12
Kent, W.J.13
-
32
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W: Human-mouse alignments with BLASTZ. Genome Res 2003, 13:103-107.
-
(2003)
Genome Res
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
33
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla. AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, et al: Initial sequencing and comparative analysis of the mouse genome. Nature 2002, 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
Antonarakis, S.E.11
Attwood, J.12
Baertsch, R.13
Bailey, J.14
Barlow, K.15
Beck, S.16
Berry, E.17
Birren, B.18
Bloom, T.19
Bork, P.20
Botcherby, M.21
Bray, N.22
Brent, M.R.23
Brown, D.G.24
Brown, S.D.25
Bult, C.26
Burton, J.27
Butler, J.28
Campbell, R.D.29
Carninci, P.30
Cawley, S.31
Chiaromonte, F.32
Chinwalla, A.T.33
Church, D.M.34
Clamp, M.35
Clee, C.36
Collins, F.S.37
Cook, L.L.38
Copley, R.R.39
Coulson, A.40
Couronne, O.41
Cuff, J.42
Curwen, V.43
Cutts, T.44
Daly, M.45
David, R.46
Davies, J.47
Delehaunty, K.D.48
Deri, J.49
Dermitzakis, E.T.50
Dewey, C.51
Dickens, N.J.52
Diekhans, M.53
Dodge, S.54
Dubchak, I.55
Dunn, D.M.56
Eddy, S.R.57
Elnitski, L.58
Emes, R.D.59
Eswara, P.60
Eyras, E.61
Felsenfeld, A.62
Fewell, G.A.63
Flicek, P.64
Foley, K.65
Frankel, W.N.66
Fulton, L.A.67
Fulton, R.S.68
Furey, T.S.69
Gage, D.70
Gibbs, R.A.71
Glusman, G.72
Gnerre, S.73
Goldman, N.74
Goodstadt, L.75
Grafham, D.76
Graves, T.A.77
Green, E.D.78
Gregory, S.79
Guigo, R.80
Guyer, M.81
Hardison, R.C.82
Haussler, D.83
Hayashizaki, Y.84
Hillier, L.W.85
Hinrichs, A.86
Hlavina, W.87
Holzer, T.88
Hsu, F.89
Hua, A.90
Hubbard, T.91
Hunt, A.92
Jackson, I.93
Jaffe, D.B.94
Johnson, L.S.95
Jones, M.96
Jones, T.A.97
Joy, A.98
Kamal, M.99
more..
-
34
-
-
0037208166
-
TRANSFAC: Tanscriptional regulation, from patterns to profiles
-
Matys V, Fricke E, Geffers R, Gossling E, Haubrock M, Hehl R, Hornischer K, Karas D, Kel AE, Kel-Margoulis OV, Kloos DU, Land S, Lewicki-Potapov B, Michael H, Munch R, Reuter I, Rotert S, Saxel H, Scheer M, Thiele S, Wingender E: TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res 2003, 31:374-378.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gossling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
Kloos, D.U.11
Land, S.12
Lewicki-Potapov, B.13
Michael, H.14
Munch, R.15
Reuter, I.16
Rotert, S.17
Saxel, H.18
Scheer, M.19
Thiele, S.20
Wingender, E.21
more..
-
35
-
-
0032032780
-
Fields DS: Specificity, free energy and information content in protein-DNA interactions
-
Stormo GD, Fields DS: Specificity, free energy and information content in protein-DNA interactions. Trends Biochem Sci 1998, 23:109-113.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 109-113
-
-
Stormo, G.D.1
-
36
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
Stormo GD: DNA binding sites: representation and discovery. Bioinformatics 2000, 16:16-23.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
37
-
-
0037109192
-
Additivity in protein-DNA interactions: How good an approximation is it?
-
Benos PV, Bulyk ML, Stormo GD: Additivity in protein-DNA interactions: how good an approximation is it? Nucleic Acids Res 2002, 30:4442-4451.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4442-4451
-
-
Benos, P.V.1
Bulyk, M.L.2
Stormo, G.D.3
-
38
-
-
33746835021
-
Computational identification of transcriptional regulatory elements in DNA sequence
-
GuhaThakurta D: Computational identification of transcriptional regulatory elements in DNA sequence. Nucleic Acids Res 2006, 34:3585-3598.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3585-3598
-
-
GuhaThakurta, D.1
-
39
-
-
3242885830
-
PupaSNP Finder: A web tool for finding SNPs with putative effect at transcriptional level
-
Conde L, Vaquerizas JM, Santoyo J, Al-Shahrour F, Ruiz-Llorente S, Robledo M, Dopazo J: PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res 2004, 32:W242-8.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Conde, L.1
Vaquerizas, J.M.2
Santoyo, J.3
Al-Shahrour, F.4
Ruiz-Llorente, S.5
Robledo, M.6
Dopazo, J.7
-
40
-
-
24944551263
-
Identification of functional SNPs in the 5-prime flanking sequences of human genes
-
Mottagui-Tabar S, Faghihi MA, Mizuno Y, Engstrom PG, Lenhard B, Wasserman WW, Wahlestedt C: Identification of functional SNPs in the 5-prime flanking sequences of human genes. BMC Genomics 2005, 6:18.
-
(2005)
BMC Genomics
, vol.6
, pp. 18
-
-
Mottagui-Tabar, S.1
Faghihi, M.A.2
Mizuno, Y.3
Engstrom, P.G.4
Lenhard, B.5
Wasserman, W.W.6
Wahlestedt, C.7
-
41
-
-
2642529617
-
PromoLign: A database for upstream region analysis and SNPs
-
Zhao T, Chang LW, McLeod HL, Stormo GD: PromoLign: a database for upstream region analysis and SNPs. Hum Mutat 2004, 23:534-539.
-
(2004)
Hum Mutat
, vol.23
, pp. 534-539
-
-
Zhao, T.1
Chang, L.W.2
McLeod, H.L.3
Stormo, G.D.4
-
42
-
-
0036390088
-
rSNP_Guide: An integrated database-tools system for studying SNPs and site-directed mutations in transcription factor binding sites
-
Ponomarenko JV, Orlova GV, Merkulova TI, Gorshkova EV, Fokin ON, Vasiliev GV, Frolov AS, Ponomarenko MP: rSNP_Guide: an integrated database-tools system for studying SNPs and site-directed mutations in transcription factor binding sites. Hum Mutat 2002, 20:239-246.
-
(2002)
Hum Mutat
, vol.20
, pp. 239-246
-
-
Ponomarenko, J.V.1
Orlova, G.V.2
Merkulova, T.I.3
Gorshkova, E.V.4
Fokin, O.N.5
Vasiliev, G.V.6
Frolov, A.S.7
Ponomarenko, M.P.8
-
43
-
-
0041853625
-
MATCH: A tool for searching transcription factor binding sites in DNA sequences
-
Kel AE, Gossling E, Reuter I, Cheremushkin E, Kel-Margoulis OV, Wingender E: MATCH: A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res 2003, 31:3576-3579.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Kel, A.E.1
Gossling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
-
44
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
Wasserman WW, Sandelin A: Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 2004, 5:276-287.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
45
-
-
0742306815
-
Computational prediction of transcription-factor binding site locations
-
Bulyk ML: Computational prediction of transcription-factor binding site locations. Genome Biol 2003, 5:201.
-
(2003)
Genome Biol
, vol.5
, pp. 201
-
-
Bulyk, M.L.1
-
46
-
-
0035860551
-
A gene expression map for Caenorhabditis elegans
-
Kim SK, Lund J, Kiraly M, Duke K, Jang M, Stuart JM, Eizinger A, Wylie BN, Davidson GS: A gene expression map for Caenorhabditis elegans. Science 2001, 293:2087-2092.
-
(2001)
Science
, vol.293
, pp. 2087-2092
-
-
Kim, S.K.1
Lund, J.2
Kiraly, M.3
Duke, K.4
Jang, M.5
Stuart, J.M.6
Eizinger, A.7
Wylie, B.N.8
Davidson, G.S.9
-
47
-
-
0036300823
-
Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm
-
Zhu Z, Pilpel Y, Church GM: Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm. J Mol Biol 2002, 318:71-81.
-
(2002)
J Mol Biol
, vol.318
, pp. 71-81
-
-
Zhu, Z.1
Pilpel, Y.2
Church, G.M.3
-
48
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart JM, Segal E, Koller D, Kim SK: A gene-coexpression network for global discovery of conserved genetic modules. Science 2003, 302:249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
49
-
-
0035865260
-
Experimental annotation of the human genome using microarray technology
-
Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS: Experimental annotation of the human genome using microarray technology. Nature 2001, 409:922-927.
-
(2001)
Nature
, vol.409
, pp. 22-927
-
-
Shoemaker, D.D.1
Schadt, E.E.2
Armour, C.D.3
He, Y.D.4
Garrett-Engele, P.5
McDonagh, P.D.6
Loerch, P.M.7
Leonardson, A.8
Lum, P.Y.9
Cavet, G.10
Wu, L.F.11
Altschuler, S.J.12
Edwards, S.13
King, J.14
Tsang, J.S.15
Schimmack, G.16
Schelter, J.M.17
Koch, J.18
Ziman, M.19
Marton, M.J.20
Li, B.21
Cundiff, P.22
Ward, T.23
Castle, J.24
Krolewski, M.25
Meyer, M.R.26
Mao, M.27
Burchard, J.28
Kidd, M.J.29
Dai, H.30
Phillips, J.W.31
Linsley, P.S.32
Stoughton, R.33
Scherer, S.34
Boguski, M.S.35
more..
-
50
-
-
0347691435
-
Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing
-
Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM: Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing. Genome Biol 2003, 4:R66.
-
(2003)
Genome Biol
, vol.4
-
-
Castle, J.1
Garrett-Engele, P.2
Armour, C.D.3
Duenwald, S.J.4
Loerch, P.M.5
Meyer, M.R.6
Schadt, E.E.7
Stoughton, R.8
Parrish, M.L.9
Shoemaker, D.D.10
Johnson, J.M.11
-
51
-
-
0042359360
-
Functional analysis of human promoter polymorphisms
-
Hoogendoorn B, Coleman SL, Guy CA, Smith K, Bowen T, Buckland PR, O'Donovan MC: Functional analysis of human promoter polymorphisms. Hum Mol Genet 2003, 12:2249-2254.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 2249-2254
-
-
Hoogendoorn, B.1
Coleman, S.L.2
Guy, C.A.3
Smith, K.4
Bowen, T.5
Buckland, P.R.6
O'Donovan, M.C.7
-
52
-
-
0141764868
-
A HANDful of questions: The molecular biology of the heart and neural crest derivatives (HAND)-subclass of basic helix-loop-helix transcription factors
-
Firulli AB: A HANDful of questions: the molecular biology of the heart and neural crest derivatives (HAND)-subclass of basic helix-loop-helix transcription factors. Gene 2003, 312:27-40.
-
(2003)
Gene
, vol.312
, pp. 27-40
-
-
Firulli, A.B.1
-
53
-
-
10744224159
-
A survey of genetic and epigenetic variation affecting human gene expression
-
Pastinen T, Sladek R, Gurd S, Sammak A, Ge B, Lepage P, Lavergne K, Villeneuve A, Gaudin T, Brandstrom H, Beck A, Verner A, Kingsley J, Harmsen E, Labuda D, Morgan K, Vohl MC, Naumova AK, Sinnett D, Hudson TJ: A survey of genetic and epigenetic variation affecting human gene expression. Physiol Genomics 2004, 16:184-193.
-
(2004)
Physiol Genomics
, vol.16
, pp. 184-193
-
-
Pastinen, T.1
Sladek, R.2
Gurd, S.3
Sammak, A.4
Ge, B.5
Lepage, P.6
Lavergne, K.7
Villeneuve, A.8
Gaudin, T.9
Brandstrom, H.10
Beck, A.11
Verner, A.12
Kingsley, J.13
Harmsen, E.14
Labuda, D.15
Morgan, K.16
Vohl, M.C.17
Naumova, A.K.18
Sinnett, D.19
Hudson, T.J.20
more..
-
54
-
-
7444225272
-
In silico genetics: Identification of a functional element regulating H2-Ealpha gene expression
-
Liao G, Wang J, Guo J, Allard J, Cheng J, Ng A, Shafer S, Puech A, McPherson JD, Foernzler D, Peitz G, Usuka J: In silico genetics: identification of a functional element regulating H2-Ealpha gene expression. Science 2004, 306:690-695.
-
(2004)
Science
, vol.306
, pp. 690-695
-
-
Liao, G.1
Wang, J.2
Guo, J.3
Allard, J.4
Cheng, J.5
Ng, A.6
Shafer, S.7
Puech, A.8
McPherson, J.D.9
Foernzler, D.10
Peitz, G.11
Usuka, J.12
-
55
-
-
17244367767
-
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis
-
Mooney S: Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. Brief Bioinform 2005, 6:44-56.
-
(2005)
Brief Bioinform
, vol.6
, pp. 44-56
-
-
Mooney, S.1
-
56
-
-
0036855185
-
Abundant raw material for cis-regulatory evolution in humans
-
Rockman MV, Wray GA: Abundant raw material for cis-regulatory evolution in humans. Mol Biol Evol 2002, 19:1991-2004.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1991-2004
-
-
Rockman, M.V.1
Wray, G.A.2
-
57
-
-
7044231595
-
A high proportion of polymorphisms in the promoters of brain expressed genes influences transcriptional activity
-
Buckland Pr, Hoogendoorn B, Guy CA, Coleman SL, Smith SK, Buxbaum JD, Haroutunian V, O'Donovan MC: A high proportion of polymorphisms in the promoters of brain expressed genes influences transcriptional activity. Biochim Biophys Acta 2004, 1690:238-249.
-
(2004)
Biochim Biophys Acta
, vol.1690
, pp. 238-249
-
-
Buckland, P.R.1
Hoogendoorn, B.2
Guy, C.A.3
Coleman, S.L.4
Smith, S.K.5
Buxbaum, J.D.6
Haroutunian, V.7
O'Donovan, M.C.8
-
58
-
-
24344500097
-
Strong bias in the location of functional promoter polymorphisms
-
Buckland PR, Hoogendoorn B, Coleman SL, Guy CA, Smith SK, O'Donovan MC: Strong bias in the location of functional promoter polymorphisms. Hum Mutat 2005, 26:214-223.
-
(2005)
Hum Mutat
, vol.26
, pp. 214-223
-
-
Buckland, P.R.1
Hoogendoorn, B.2
Coleman, S.L.3
Guy, C.A.4
Smith, S.K.5
O'Donovan, M.C.6
-
59
-
-
2942562374
-
A high proportion of chromosome 21 promoter polymorphisms influence transcriptional activity
-
Buckland PR, Coleman SL, Hoogendoorn B, Guy C, Smith SK, O'Donovan MC: A high proportion of chromosome 21 promoter polymorphisms influence transcriptional activity. Gene Expr 2004, 11:233-239.
-
(2004)
Gene Expr
, vol.11
, pp. 233-239
-
-
Buckland, P.R.1
Coleman, S.L.2
Hoogendoorn, B.3
Guy, C.4
Smith, S.K.5
O'Donovan, M.C.6
-
60
-
-
29644446630
-
Mapping common regulatory variants to human haplotypes
-
Pastinen T, Ge B, Gurd S, Gaudin T, Dore C, Lemire M, Lepage P, Harmsen E, Hudson TJ: Mapping common regulatory variants to human haplotypes. Hum Mol Genet 2005, 14:3963-3971.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 3963-3971
-
-
Pastinen, T.1
Ge, B.2
Gurd, S.3
Gaudin, T.4
Dore, C.5
Lemire, M.6
Lepage, P.7
Harmsen, E.8
Hudson, T.J.9
-
61
-
-
33645755425
-
Mapping cis-acting regulatory variation in recombinant congenic strains
-
Lee PD, Ge B, Greenwood CM, Sinnett D, Fortin Y, Brunet S, Fortin A, Takane M, Skamene E, Pastinen T, Hallett M, Hudson TJ, Sladek R: Mapping cis-acting regulatory variation in recombinant congenic strains. Physiol Genomics 2006, 25:294-302.
-
(2006)
Physiol Genomics
, vol.25
, pp. 294-302
-
-
Lee, P.D.1
Ge, B.2
Greenwood, C.M.3
Sinnett, D.4
Fortin, Y.5
Brunet, S.6
Fortin, A.7
Takane, M.8
Skamene, E.9
Pastinen, T.10
Hallett, M.11
Hudson, T.J.12
Sladek, R.13
-
62
-
-
0032549745
-
Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
-
Yuh CH, Bolouri H, Davidson EH: Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science 1998, 279:1896-1902.
-
(1998)
Science
, vol.279
, pp. 1896-1902
-
-
Yuh, C.H.1
Bolouri, H.2
Davidson, E.H.3
-
63
-
-
84872277681
-
r_SNP guide examples
-
r_SNP guide examples [http://wwwmgs.bionet.nsc.ru/mgs/programs/rsnp/ images/]
-
-
-
-
64
-
-
0037903275
-
Human Gene Mutation Database (HGMD): 2003 update
-
Stenson PD, Ball EV, Mort M, Phillips AD, Shiel JA, Thomas NS, Abeysinghe S, Krawczak M, Cooper DN: Human Gene Mutation Database (HGMD): 2003 update. Hum Mutat 2003, 21:577-581.
-
(2003)
Hum Mutat
, vol.21
, pp. 577-581
-
-
Stenson, P.D.1
Ball, E.V.2
Mort, M.3
Phillips, A.D.4
Shiel, J.A.5
Thomas, N.S.6
Abeysinghe, S.7
Krawczak, M.8
Cooper, D.N.9
-
65
-
-
33645825830
-
A common genetic variant is associated with adult and childhood obesity
-
Herbert A, Gerry NP, McQueen MB, Heid IM, Pfeufer A, Illig T, Wichmann HE, Meitinger T, Hunter D, Hu FB, Colditz G, Hinney A, Hebebrand J, Koberwitz K, Zhu X, Cooper R, Ardlie K, Lyon H, Hirschhorn JN, Laird NM, Lenburg ME, Lange C, Christman MF: A common genetic variant is associated with adult and childhood obesity. Science 2006, 312:279-283.
-
(2006)
Science
, vol.312
, pp. 279-283
-
-
Herbert, A.1
Gerry, N.P.2
McQueen, M.B.3
Heid, I.M.4
Pfeufer, A.5
Illig, T.6
Wichmann, H.E.7
Meitinger, T.8
Hunter, D.9
Hu, F.B.10
Colditz, G.11
Hinney, A.12
Hebebrand, J.13
Koberwitz, K.14
Zhu, X.15
Cooper, R.16
Ardlie, K.17
Lyon, H.18
Hirschhorn, J.N.19
Laird, N.M.20
Lenburg, M.E.21
Lange, C.22
Christman, M.F.23
more..
-
66
-
-
33746075560
-
TCF7L2 polymorphisms and progression to diabetes in the Diabetes Prevention Program
-
Florez JC, Jablonski KA, Bayley N, Pollin TI, de Bakker PI, Shuldiner AP, Knowler WC, Nathan DM, Altshuler D: TCF7L2 polymorphisms and progression to diabetes in the Diabetes Prevention Program. N Engl J Med 2006, 355:241-250.
-
(2006)
N Engl J Med
, vol.355
, pp. 241-250
-
-
Florez, J.C.1
Jablonski, K.A.2
Bayley, N.3
Pollin, T.I.4
de Bakker, P.I.5
Shuldiner, A.P.6
Knowler, W.C.7
Nathan, D.M.8
Altshuler, D.9
-
67
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeidinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA: Transcriptional regulatory code of a eukaryotic genome. Nature 2004, 431:99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeidinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gifford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
68
-
-
27644549928
-
Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits
-
Mehrabian M, Ahayee H, Stockton J, Lum PY, Drake TA, Castellani LW, Suh M, Armour C, Edwards S, Lamb J, Lusis AJ, Schadt EE: Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits. Nat Genet 2005, 37:1224-1233.
-
(2005)
Nat Genet
, vol.37
, pp. 1224-1233
-
-
Mehrabian, M.1
Ahayee, H.2
Stockton, J.3
Lum, P.Y.4
Drake, T.A.5
Castellani, L.W.6
Suh, M.7
Armour, C.8
Edwards, S.9
Lamb, J.10
Lusis, A.J.11
Schadt, E.E.12
-
69
-
-
84872261372
-
UCSC mouse-human alignments
-
UCSC mouse-human alignments [http://genome-archive.cse.ucsc.edu/ goldenPath/mm4/vsHg16/]
-
-
-
-
70
-
-
20044386880
-
Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
-
Hardenbol P, Yu F, Belmont J, Mackenzie J, Bruckner C, Brundage T, Boudreau A, Chow S, Eberle J, Erbilgin A, Falkowski M, Fitzgerald R, Ghose S, Iartchouk O, Jain M, Karlin-Neumann G, Lu X, Miao X, Moore B, Moorhead M, Namsaraev E, Pasternak S, Prakash E, Tran K, Wang Z, Jones HB, Davis RW, Willis TD, Gibbs RA: Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay. Genome Res 2005, 15:269-275.
-
(2005)
Genome Res
, vol.15
, pp. 269-275
-
-
Hardenbol, P.1
Yu, F.2
Belmont, J.3
Mackenzie, J.4
Bruckner, C.5
Brundage, T.6
Boudreau, A.7
Chow, S.8
Eberle, J.9
Erbilgin, A.10
Falkowski, M.11
Fitzgerald, R.12
Ghose, S.13
Iartchouk, O.14
Jain, M.15
Karlin-Neumann, G.16
Lu, X.17
Miao, X.18
Moore, B.19
Moorhead, M.20
Namsaraev, E.21
Pasternak, S.22
Prakash, E.23
Tran, K.24
Wang, Z.25
Jones, H.B.26
Davis, R.W.27
Willis, T.D.28
Gibbs, R.A.29
more..
-
71
-
-
0037944217
-
Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
-
He YD, Dal H, Schadt EE, Cavet G, Edwards SW, Stepaniants SB, Duenwald S, Kleinhanz R, Jones AR, Shoemaker DD, Stoughton RB: Microarray standard data set and figures of merit for comparing data processing methods and experiment designs. Bioinformatics 2003, 19:956-965.
-
(2003)
Bioinformatics
, vol.19
, pp. 956-965
-
-
He, Y.D.1
Dal, H.2
Schadt, E.E.3
Cavet, G.4
Edwards, S.W.5
Stepaniants, S.B.6
Duenwald, S.7
Kleinhanz, R.8
Jones, A.R.9
Shoemaker, D.D.10
Stoughton, R.B.11
-
72
-
-
84872262856
-
-
QTL Cartographer
-
QTL Cartographer [http://statgen.ncsu.edu/qtlcart/]
-
-
-
-
73
-
-
19344374029
-
Nonsense-mediated mRNA decay: Molecular insights and mechanistic variations across species
-
Conti E, Izaurralde E: Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. Curr Opin Cell Biol 2005, 17:316-325.
-
(2005)
Curr Opin Cell Biol
, vol.17
, pp. 316-325
-
-
Conti, E.1
Izaurralde, E.2
-
74
-
-
2442680252
-
Analysis of segmental duplications and genome assembly in the mouse
-
Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE: Analysis of segmental duplications and genome assembly in the mouse. Genome Res 2004, 14:789-801.
-
(2004)
Genome Res
, vol.14
, pp. 789-801
-
-
Bailey, J.A.1
Church, D.M.2
Ventura, M.3
Rocchi, M.4
Eichler, E.E.5
-
75
-
-
84872269313
-
Map of genomic duplications in mouse
-
Map of genomic duplications in mouse [http://mouseparalogy.gs.washington.edu/]
-
-
-
-
76
-
-
20044394908
-
Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse
-
Pletcher MT, McClurg P, Batalov S, Su Al, Barnes SW, Lagler E, Korstanje R, Wang X, Nusskern D, Bogue MA, Mural RJ, Paigen B, Wiltshire T: Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse. PLoS Biol 2004, 2:e393.
-
(2004)
PLoS Biol
, vol.2
-
-
Pletcher, M.T.1
McClurg, P.2
Batalov, S.3
Su, Al.4
Barnes, S.W.5
Lagler, E.6
Korstanje, R.7
Wang, X.8
Nusskern, D.9
Bogue, M.A.10
Mural, R.J.11
Paigen, B.12
Wiltshire, T.13
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