-
1
-
-
17344391629
-
HGBASE: A database of SNPs and other variations in and around human genes
-
Brookes AJ, Lehvaslaiho H, Siegfried M, Boehm JG, Yuan YP, Sarkar CM, Bork P, Ortigao F: HGBASE: a database of SNPs and other variations in and around human genes. Nucleic Acids Res 2000, 28:356-360.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 356-360
-
-
Brookes, A.J.1
Lehvaslaiho, H.2
Siegfried, M.3
Boehm, J.G.4
Yuan, Y.P.5
Sarkar, C.M.6
Bork, P.7
Ortigao, F.8
-
2
-
-
0032991552
-
Characterization of single-nucleotide polymorphisms in coding regions of human genes
-
Cargill M, Altshuler D, Ireland J, Sklar P, Ardlie K, Patil N, Shaw N, Lane CR, Lim EP, Kalyanaraman N, Nemesh J, Ziaugra L, Friedland L, Rolfe A, Warrington J, Lipshutz R, Daley GQ, Lander ES: Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat Genet 1999, 22:231-238.
-
(1999)
Nat. Genet.
, vol.22
, pp. 231-238
-
-
Cargill, M.1
Altshuler, D.2
Ireland, J.3
Sklar, P.4
Ardlie, K.5
Patil, N.6
Shaw, N.7
Lane, C.R.8
Lim, E.P.9
Kalyanaraman, N.10
Nemesh, J.11
Ziaugra, L.12
Friedland, L.13
Rolfe, A.14
Warrington, J.15
Lipshutz, R.16
Daley, G.Q.17
Lander, E.S.18
-
3
-
-
0035937259
-
Predicting the Functional Consequences of Non-synonymous Single Nucleotide Polymorphisms: Structure-based Assessment of Amino Acid Variation
-
Chasman D, Adams RM: Predicting the Functional Consequences of Non-synonymous Single Nucleotide Polymorphisms: Structure-based Assessment of Amino Acid Variation,. Journal of Molecular Biology 2001, 307:683-706.
-
(2001)
Journal of Molecular Biology
, vol.307
, pp. 683-706
-
-
Chasman, D.1
Adams, R.M.2
-
5
-
-
0034191958
-
Towards a structural basis of human non-synonymous single nucleotide polymorphisms
-
Sunyaev S, Ramensky V, Bork P: Towards a structural basis of human non-synonymous single nucleotide polymorphisms. Trends in Genetics 2000, 16:198-200.
-
(2000)
Trends in Genetics
, vol.16
, pp. 198-200
-
-
Sunyaev, S.1
Ramensky, V.2
Bork, P.3
-
6
-
-
0035869223
-
Prediction of deleterious human alleles
-
Sunyaev S, Ramensky V, Koch I, Lathe III W, Kondrashov AS, Bork P: Prediction of deleterious human alleles. Hum Mol Genet 2001, 10:591.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 591
-
-
Sunyaev, S.1
Ramensky, V.2
Koch, I.3
Lathe III, W.4
Kondrashov, A.S.5
Bork, P.6
-
7
-
-
0035173378
-
dbSNP: The NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 2001, 29:308-311.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
8
-
-
0037246683
-
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: Application to genome annotation
-
Ponomarenko JV, Merkulova TI, Orlova GV, Fokin ON, Gorshkova EV, Frolov AS, Valuev VP, Ponomarenko MP: rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. Nucleic Acids Res 2003, 31:118-121.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 118-121
-
-
Ponomarenko, J.V.1
Merkulova, T.I.2
Orlova, G.V.3
Fokin, O.N.4
Gorshkova, E.V.5
Frolov, A.S.6
Valuev, V.P.7
Ponomarenko, M.P.8
-
9
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
Pennacchio LA, Rubin EM: Genomic strategies to identify mammalian regulatory sequences. Nat Rev Genet 2001, 2:100-109.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 100-109
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
10
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
Stormo GD: DNA binding sites: representation and discovery. Bioinformatics 2000, 16:16.
-
(2000)
Bioinformatics
, vol.16
, pp. 16
-
-
Stormo, G.D.1
-
11
-
-
0029655429
-
Quantitative discrimination of MEF2 sites
-
Fickett JW: Quantitative discrimination of MEF2 sites. Mol Cell Biol 1996, 16:437.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 437
-
-
Fickett, J.W.1
-
12
-
-
0031633362
-
Predictive methods using nucleotide sequences
-
Fickett JW: Predictive methods using nucleotide sequences. Methods Biochem Anal 1998, 39:231-245.
-
(1998)
Methods Biochem. Anal.
, vol.39
, pp. 231-245
-
-
Fickett, J.W.1
-
13
-
-
0033655171
-
ANN-Spec: A method for discovering transcription factor binding sites with improved specificity
-
Workman CT, Stormo GD: ANN-Spec: a method for discovering transcription factor binding sites with improved specificity. Pac Symp Biocomput 2000:467-478.
-
(2000)
Pac. Symp. Biocomput.
, pp. 467-478
-
-
Workman, C.T.1
Stormo, G.D.2
-
14
-
-
0031581855
-
Analysis of the Distribution of Binding Sites for a Tissue-specific Transcription Factor in the Vertebrate Genome
-
Tronche F, Ringeisen F, Blumenfeld M, Yaniv M, Pontoglio M: Analysis of the Distribution of Binding Sites for a Tissue-specific Transcription Factor in the Vertebrate Genome,. Journal of Molecular Biology 1997, 266:231-245.
-
(1997)
Journal of Molecular Biology
, vol.266
, pp. 231-245
-
-
Tronche, F.1
Ringeisen, F.2
Blumenfeld, M.3
Yaniv, M.4
Pontoglio, M.5
-
15
-
-
0030927867
-
Searching for regulatory elements in human noncoding sequences
-
Duret L, Bucher P: Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol 1997, 7:399-406.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 399-406
-
-
Duret, L.1
Bucher, P.2
-
16
-
-
0034819935
-
A Predictive Model for Regulatory Sequences Directing Liver-Specific Transcription
-
Krivan W, Wasserman WW: A Predictive Model for Regulatory Sequences Directing Liver-Specific Transcription. Genome Res 2001, 11:1559.
-
(2001)
Genome. Res.
, vol.11
, pp. 1559
-
-
Krivan, W.1
Wasserman, W.W.2
-
17
-
-
0041903634
-
Identification of conserved regulatory elements by comparative genome analysis
-
Lenhard B, Sandelin A, Mendoza L, Engstrom P, Jareborg N, Wasserman WW: Identification of conserved regulatory elements by comparative genome analysis. J Biol 2003, 2:13.
-
(2003)
J. Biol.
, vol.2
, pp. 13
-
-
Lenhard, B.1
Sandelin, A.2
Mendoza, L.3
Engstrom, P.4
Jareborg, N.5
Wasserman, W.W.6
-
18
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W, Rubin EM, Frazer KA: Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 2000, 288:136-140.
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
19
-
-
0035399726
-
Selective constraint in intergenic regions of human and mouse genomes
-
Shabalina SA, Ogurtsov AY, Kondrashov VA, Kondrashov AS: Selective constraint in intergenic regions of human and mouse genomes. Trends Genet 2001, 17:373-376.
-
(2001)
Trends Genet.
, vol.17
, pp. 373-376
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Kondrashov, V.A.3
Kondrashov, A.S.4
-
20
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH, Lewis S: Comparative genomics of the eukaryotes. Science 2000, 287:2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
Fortini, M.E.7
Li, P.W.8
Apweiler, R.9
Fleischmann, W.10
Cherry, J.M.11
Henikoff, S.12
Skupski, M.P.13
Misra, S.14
Ashburner, M.15
Birney, E.16
Boguski, M.S.17
Brody, T.18
Brokstein, P.19
Celniker, S.E.20
Chervitz, S.A.21
Coates, D.22
Cravchik, A.23
Gabrielian, A.24
Galle, R.F.25
Gelbart, W.M.26
George, R.A.27
Goldstein, L.S.28
Gong, F.29
Guan, P.30
Harris, N.L.31
Hay, B.A.32
Hoskins, R.A.33
Li, J.34
Li, Z.35
Hynes, R.O.36
Jones, S.J.37
Kuehl, P.M.38
Lemaitre, B.39
Littleton, J.T.40
Morrison, D.K.41
Mungall, C.42
O'Farrell, P.H.43
Pickeral, O.K.44
Shue, C.45
Vosshall, L.B.46
Zhang, J.47
Zhao, Q.48
Zheng, X.H.49
Lewis, S.50
more..
-
21
-
-
0033843626
-
Towards 3D structures of G protein-coupled receptors: A multidisciplinary approach
-
Muller G: Towards 3D structures of G protein-coupled receptors: a multidisciplinary approach. Curr Med Chem 2000, 7:861-888.
-
(2000)
Curr. Med. Chem.
, vol.7
, pp. 861-888
-
-
Muller, G.1
-
22
-
-
0035040530
-
Genetic variations and polymorphisms of G protein-coupled receptors: Functional and therapeutic implications
-
Rana BK, Shiina T, Insel PA: Genetic variations and polymorphisms of G protein-coupled receptors: functional and therapeutic implications. Annu Rev Pharmacol Toxicol 2001, 41:593-624.
-
(2001)
Annu. Rev. Pharmacol. Toxicol.
, vol.41
, pp. 593-624
-
-
Rana, B.K.1
Shiina, T.2
Insel, P.A.3
-
23
-
-
0035783156
-
Genetic variations in human G protein-coupled receptors: Implications for drug therapy
-
Sadee W, Hoeg E, Lucas J, Wang D: Genetic variations in human G protein-coupled receptors: implications for drug therapy. AAPS PharmSci 2001, 3:E22.
-
(2001)
AAPS PharmSci.
, vol.3
-
-
Sadee, W.1
Hoeg, E.2
Lucas, J.3
Wang, D.4
-
24
-
-
0037051901
-
False positive non-synonymous polymorphisms of G-protein coupled receptor genes
-
Small KM, Seman CA, Castator A, Brown KM, Liggett SB: False positive non-synonymous polymorphisms of G-protein coupled receptor genes. FEBS Letters 2002, 516:253-256.
-
(2002)
FEBS Letters
, vol.516
, pp. 253-256
-
-
Small, K.M.1
Seman, C.A.2
Castator, A.3
Brown, K.M.4
Liggett, S.B.5
-
25
-
-
13444251422
-
Ensembl 2005. Database Issue
-
Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Gilbert J, Hammond M, Herrero J, Hotz H, Howe K, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Kokocinsci F, London D, Longden I, McVicker G, Melsopp C, Meidl P, Potter S, Proctor G, Rae M, Rios D, Schuster M, Searle S, Severin J, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, Birney E: Ensembl 2005. Nucleic Acids Res 2005, 33 Database Issue:D447-D453.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Hubbard, T.1
Andrews, D.2
Caccamo, M.3
Cameron, G.4
Chen, Y.5
Clamp, M.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cunningham, F.10
Curwen, V.11
Cutts, T.12
Down, T.13
Durbin, R.14
Fernandez-Suarez, X.M.15
Gilbert, J.16
Hammond, M.17
Herrero, J.18
Hotz, H.19
Howe, K.20
Iyer, V.21
Jekosch, K.22
Kahari, A.23
Kasprzyk, A.24
Keefe, D.25
Keenan, S.26
Kokocinsci, F.27
London, D.28
Longden, I.29
McVicker, G.30
Melsopp, C.31
Meidl, P.32
Potter, S.33
Proctor, G.34
Rae, M.35
Rios, D.36
Schuster, M.37
Searle, S.38
Severin, J.39
Slater, G.40
Smedley, D.41
Smith, J.42
Spooner, W.43
Stabenau, A.44
Stalker, J.45
Storey, R.46
Trevanion, S.47
Ureta-Vidal, A.48
Vogel, J.49
White, S.50
Woodwark, C.51
Birney, E.52
more..
-
26
-
-
0037250168
-
The UCSC Genome Browser Database
-
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ: The UCSC Genome Browser Database. Nucleic Acids Res 2003, 31:51-54.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
27
-
-
0347125328
-
JASPAR: An open-access database for eukaryotic transcription factor binding profiles. Database issue
-
Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B: JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res 2004, 32 Database issue:D91-D94.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
28
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 fulllength cDNAs
-
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H: Analysis of the mouse transcriptome based on functional annotation of 60,770 fulllength cDNAs. Nature 2002, 420:563-573.
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
-
29
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
Kent WJ: BLAT - the BLAST-like alignment tool. Genome Res 2002, 12:656-664.
-
(2002)
Genome. Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
30
-
-
0035207865
-
GeneLynx: A gene-centric portal to the human genome
-
Lenhard B, Hayes WS, Wasserman WW: GeneLynx: a gene-centric portal to the human genome. Genome Res 2001, 11:2151-2157.
-
(2001)
Genome. Res.
, vol.11
, pp. 2151-2157
-
-
Lenhard, B.1
Hayes, W.S.2
Wasserman, W.W.3
-
31
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W: Human-mouse alignments with BLASTZ. Genome Res 2003, 13:103-107.
-
(2003)
Genome. Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
32
-
-
0036677662
-
TFBS: Computational framework for transcription factor binding site analysis
-
Lenhard B, Wasserman WW: TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 2002, 18:1135-1136.
-
(2002)
Bioinformatics
, vol.18
, pp. 1135-1136
-
-
Lenhard, B.1
Wasserman, W.W.2
-
33
-
-
0035571592
-
Allele-specific regulation of matrix metalloproteinase-7 promoter activity is associated with coronary artery luminal dimensions among hypercholesterolemic patients
-
Jormsjo S, Whatling C, Walter DH, Zeiher AM, Hamsten A, Eriksson P: Allele-specific regulation of matrix metalloproteinase-7 promoter activity is associated with coronary artery luminal dimensions among hypercholesterolemic patients. Arterioscler Thromb Vasc Biol 2001, 21:1834-1839.
-
(2001)
Arterioscler. Thromb. Vasc. Biol.
, vol.21
, pp. 1834-1839
-
-
Jormsjo, S.1
Whatling, C.2
Walter, D.H.3
Zeiher, A.M.4
Hamsten, A.5
Eriksson, P.6
|