-
1
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.L. and Elkan, C.P. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Intell. Sys. Mol. Biol., 2, 28-36.
-
(1994)
Intell. Sys. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.P.2
-
2
-
-
0029197507
-
The value of prior knowledge in discovering motifs with
-
Bailey, T.L. and Elkan, C.P. (1995) The value of prior knowledge in discovering motifs with. Intell. Sys. Mol. Biol., 3, 21-29.
-
(1995)
Intell. Sys. Mol. Biol.
, vol.3
, pp. 21-29
-
-
Bailey, T.L.1
Elkan, C.P.2
-
3
-
-
0028303468
-
Quantitative analysis of ribosome binding sites in E. coli
-
Barrick, D., Villanueba, K., Childs, J., Kalil, R., Schneider, T.D., Lawrence, C.E., Gold, L. and Stormo, G.D. (1994) Quantitative analysis of ribosome binding sites in E. coli. Nucl. Acids Res., 22, 1287-1295.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 1287-1295
-
-
Barrick, D.1
Villanueba, K.2
Childs, J.3
Kalil, R.4
Schneider, T.D.5
Lawrence, C.E.6
Gold, L.7
Stormo, G.D.8
-
4
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
-
Berg, O.G. and von Hippel, P.H. (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol., 193, 723-750.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
Von Hippel, P.H.2
-
5
-
-
0031878759
-
Approaches to the automatic discovery of patterns in biosequences
-
Brazma, A., Jonassen, I., Eidhammer, I. and Gilbert, D. (1998a) Approaches to the automatic discovery of patterns in biosequences. J. Comput. Biol., 5, 279-305.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 279-305
-
-
Brazma, A.1
Jonassen, I.2
Eidhammer, I.3
Gilbert, D.4
-
6
-
-
0032413411
-
Predicting gene regulatory elements in silico on a genomic scale
-
Brazma, A., Jonassen, I., Vilo, J. and Ukkonen, E. (1998) Predicting gene regulatory elements in silico on a genomic scale. Genome Res., 8, 1202-1215.
-
(1998)
Genome Res.
, vol.8
, pp. 1202-1215
-
-
Brazma, A.1
Jonassen, I.2
Vilo, J.3
Ukkonen, E.4
-
7
-
-
0030449157
-
The statistical significance of nucleotide position-weight matrix matches
-
Claverie, J.M. and Audic, S. (1996) The statistical significance of nucleotide position-weight matrix matches. Comput. Appl. Biosci., 12, 431-439.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 431-439
-
-
Claverie, J.M.1
Audic, S.2
-
8
-
-
0026598149
-
Critical comparison of consensus methods for molecular sequences
-
Day, W.H. and McMorris, F.R. (1992) Critical comparison of consensus methods for molecular sequences. Nucl. Acids Res., 20, 1093-1099.
-
(1992)
Nucl. Acids Res.
, vol.20
, pp. 1093-1099
-
-
Day, W.H.1
McMorris, F.R.2
-
9
-
-
0025853156
-
Neural network optimization for E. coli promoter prediction
-
Demeler, B. and Zhou, G.W. (1991) Neural network optimization for E. coli promoter prediction. Nucl. Acids Res., 19, 1593-1599.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 1593-1599
-
-
Demeler, B.1
Zhou, G.W.2
-
10
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J.L., Iyer, V.R. and Brown, P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
11
-
-
0025166089
-
Secondary structure of the ribosome binding site determines translational efficiency: A quantitative analysis
-
de Smit, M.H. and van Duin, J. (1990) Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. Proc. Natl. Acad. Sci. USA, 87, 7668-7672.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 7668-7672
-
-
De Smit, M.H.1
Van Duin, J.2
-
12
-
-
0016427510
-
Genetic regulation: The Lac control region
-
Dickson, R.C., Abelson, J., Barnes, W.M. and Reznikoff, W.S. (1975) Genetic regulation: the Lac control region. Science, 187, 27-35.
-
(1975)
Science
, vol.187
, pp. 27-35
-
-
Dickson, R.C.1
Abelson, J.2
Barnes, W.M.3
Reznikoff, W.S.4
-
13
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
14
-
-
0027286405
-
Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids
-
Frech, K., Herrmann, G. and Werner, T. (1993) Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids. Nucl. Acids Res., 21, 1655-1664.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 1655-1664
-
-
Frech, K.1
Herrmann, G.2
Werner, T.3
-
15
-
-
0018199224
-
DNAse footprinting: A simple method for the detection of protein-DNA binding secificity
-
Galas, D.J. and Schmitz, A. (1978) DNAse footprinting: a simple method for the detection of protein-DNA binding secificity. Nucl. Acids Res., 5, 3157-3170.
-
(1978)
Nucl. Acids Res.
, vol.5
, pp. 3157-3170
-
-
Galas, D.J.1
Schmitz, A.2
-
16
-
-
0022358896
-
Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from
-
Galas, D.J., Eggert, M. and Waterman, M.S. (1985) Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli. J. Mol. Biol., 186, 117-128.
-
(1985)
Escherichia Coli. J. Mol. Biol.
, vol.186
, pp. 117-128
-
-
Galas, D.J.1
Eggert, M.2
Waterman, M.S.3
-
17
-
-
0015757986
-
The nucleotide sequence of the lac operator
-
Gilbert, W. and Maxam, A. (1973) The nucleotide sequence of the lac operator. Proc. Natl. Acad. Sci. USA, 70, 3581-3584.
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 3581-3584
-
-
Gilbert, W.1
Maxam, A.2
-
18
-
-
0041884902
-
Binding of synthetic lactose operator DNAs to lactose represessors
-
Goeddel, D.V., Yansura, D.G. and Caruthers, M.H. (1977) Binding of synthetic lactose operator DNAs to lactose represessors. Proc. Natl. Acad. Sci. USA, 74, 3292-3296.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 3292-3296
-
-
Goeddel, D.V.1
Yansura, D.G.2
Caruthers, M.H.3
-
19
-
-
0019348832
-
Translational initiation in prokaryotes
-
Gold, L., Pribnow, D., Schneider, T., Shinedling, S., Singer, B.S. and Stormo, G. (1981) Translational initiation in prokaryotes. Ann. Rev. Microbiol., 35, 365-403.
-
(1981)
Ann. Rev. Microbiol.
, vol.35
, pp. 365-403
-
-
Gold, L.1
Pribnow, D.2
Schneider, T.3
Shinedling, S.4
Singer, B.S.5
Stormo, G.6
-
20
-
-
0029962489
-
ParaMEME: A parallel implementation and a web interface for a and protein motif discovery tool
-
Grundy, W.N., Bailey, T.L. and Elkan, C.P. (1996) ParaMEME: a parallel implementation and a web interface for a and protein motif discovery tool. Comput. Appl. Biosci., 12, 303-310.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 303-310
-
-
Grundy, W.N.1
Bailey, T.L.2
Elkan, C.P.3
-
21
-
-
0021100793
-
Search algorithm for pattern match analysis of nucleic acid sequences
-
Harr, R., Haggstrom, M. and Gustafsson, P. (1983) Search algorithm for pattern match analysis of nucleic acid sequences. Nucl. Acids Res., 11, 2943-2957.
-
(1983)
Nucl. Acids Res.
, vol.11
, pp. 2943-2957
-
-
Harr, R.1
Haggstrom, M.2
Gustafsson, P.3
-
22
-
-
0021111879
-
Compilation and analysis of Escherichia coli promoter DNA sequences
-
Hawley, D.K. and McClure, W.R. (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucl. Acids Res., 11, 2237-2255.
-
(1983)
Nucl. Acids Res.
, vol.11
, pp. 2237-2255
-
-
Hawley, D.K.1
McClure, W.R.2
-
23
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz, G.Z. and Stormo, G.D. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15, 563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
24
-
-
0025372992
-
Identification of consensus patterns in unaligned sequences known to be functionally related
-
Hertz, G.Z., Hartzell, G.W.III and Stormo, G.D. (1990) Identification of consensus patterns in unaligned sequences known to be functionally related. Comput. Appl. Biosci., 6, 81-92.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell G.W. III2
Stormo, G.D.3
-
25
-
-
0028714603
-
Neural networks for determining protein specificity and multiple alignment of binding sites
-
Heumann, J.M., Lapedes, A.S. and Stormo, G.D. (1994) Neural networks for determining protein specificity and multiple alignment of binding sites. Intell. Sys. Mol. Biol., 2, 188-194.
-
(1994)
Intell. Sys. Mol. Biol.
, vol.2
, pp. 188-194
-
-
Heumann, J.M.1
Lapedes, A.S.2
Stormo, G.D.3
-
26
-
-
0026775123
-
An assessment of neural network and statistical approaches for prediction of E. coli promoter sites
-
Horton, P.B. and Kanehisa, M. (1992) An assessment of neural network and statistical approaches for prediction of E. coli promoter sites. Nucl. Acids Res., 20, 4331-4338.
-
(1992)
Nucl. Acids Res.
, vol.20
, pp. 4331-4338
-
-
Horton, P.B.1
Kanehisa, M.2
-
27
-
-
0030699475
-
Yeast microarrays for genome wide parallel genetic and gene expression analysis
-
Lashkari, D.A., DeRisi, J.L., McCusker, J.H., Namath, A.F., Gentile, C., Hwang, S.Y., Brown, P.O. and Davis, R.W. (1997) Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc. Natl. Acad. Sci. USA, 94, 13057-13062.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13057-13062
-
-
Lashkari, D.A.1
DeRisi, J.L.2
McCusker, J.H.3
Namath, A.F.4
Gentile, C.5
Hwang, S.Y.6
Brown, P.O.7
Davis, R.W.8
-
28
-
-
0025320805
-
An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
-
Lawrence, C.E. and Reilly, A.A. (1990) An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins, 7, 41-51.
-
(1990)
Proteins
, vol.7
, pp. 41-51
-
-
Lawrence, C.E.1
Reilly, A.A.2
-
29
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F. and Wootton, J.C. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wootton, J.C.6
-
30
-
-
0027168259
-
Pattern recognition in DNA sequences and its application to consensus foot-printing
-
Lefevre, C. and Ikeda, J.E. (1993) Pattern recognition in DNA sequences and its application to consensus foot-printing. Comput. Appl. Biosci., 9, 349-354.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 349-354
-
-
Lefevre, C.1
Ikeda, J.E.2
-
31
-
-
0016640172
-
The general affinity of lac repressor for E. coli DNA: Implications for gene regulation in procaryotes and eucaryotes
-
Lin, S. and Riggs, A.D. (1975) The general affinity of lac repressor for E. coli DNA: implications for gene regulation in procaryotes and eucaryotes. Cell, 4, 107-111.
-
(1975)
Cell
, vol.4
, pp. 107-111
-
-
Lin, S.1
Riggs, A.D.2
-
32
-
-
0015712889
-
The nucleotide sequence of the lactose messenger ribonucleic acid transcribed from the UV5 promoter mutant of Escherichia coli
-
Maizels, N.M. (1973) The nucleotide sequence of the lactose messenger ribonucleic acid transcribed from the UV5 promoter mutant of Escherichia coli. Proc. Natl. Acad. Sci. USA, 70, 3585-3589.
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 3585-3589
-
-
Maizels, N.M.1
-
33
-
-
0008097165
-
Nucleotide sequence of the rightward operator of phage lambda
-
Maniatis, T., Jeffrey, A. and Kleid, D.G. (1975a) Nucleotide sequence of the rightward operator of phage lambda. Proc. Natl. Acad. Sci. USA, 72, 1184-1188.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 1184-1188
-
-
Maniatis, T.1
Jeffrey, A.2
Kleid, D.G.3
-
34
-
-
0016338638
-
Sequence of a repressor-binding site in the DNA of bacteriophage lamda
-
Maniatis, T., Ptashne, M., Barrell, B.G. and Donelson, J. (1974) Sequence of a repressor-binding site in the DNA of bacteriophage lamda. Nature, 250, 394-397.
-
(1974)
Nature
, vol.250
, pp. 394-397
-
-
Maniatis, T.1
Ptashne, M.2
Barrell, B.G.3
Donelson, J.4
-
35
-
-
0016821121
-
Recognition sequences of repressor and polymerase in the operators of bacteriophage lambda
-
Maniatis, T., Ptashne, M., Backman, K., Kleid, D., Flashman, S., Jeffrey, A. and Maure, R. (1975b) Recognition sequences of repressor and polymerase in the operators of bacteriophage lambda. Cell, 5, 109-113.
-
(1975)
Cell
, vol.5
, pp. 109-113
-
-
Maniatis, T.1
Ptashne, M.2
Backman, K.3
Kleid, D.4
Flashman, S.5
Jeffrey, A.6
Maure, R.7
-
37
-
-
0023415281
-
Recognition of characteristic patterns in sets of functionally equivalent DNA sequences
-
Mengeritsky, G. and Smith, T.F. (1987) Recognition of characteristic patterns in sets of functionally equivalent DNA sequences. Comput. Appl. Biosci., 3, 223-227.
-
(1987)
Comput. Appl. Biosci.
, vol.3
, pp. 223-227
-
-
Mengeritsky, G.1
Smith, T.F.2
-
38
-
-
0021760063
-
Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity
-
Mulligan, M.E., Hawley, D.K., Entriken, R. and McClure, W.R. (1984) Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity. Nucl. Acids Res., 12, 789-800.
-
(1984)
Nucl. Acids Res.
, vol.12
, pp. 789-800
-
-
Mulligan, M.E.1
Hawley, D.K.2
Entriken, R.3
McClure, W.R.4
-
39
-
-
0026024281
-
Training back-propagation neural networks to define and detect DNA-binding sites
-
O'Neill, M.C. (1991) Training back-propagation neural networks to define and detect DNA-binding sites. Nucl. Acids Res., 19, 313-318.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 313-318
-
-
O'Neill, M.C.1
-
40
-
-
0026729501
-
WORDUP: An efficient algorithm for discovering statistically significant patterns in DNA sequences
-
Pesole, G., Prunella, N., Liuni, S., Attimonelli, M. and Saccone, C. (1992) WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences. Nucl. Acids Res., 20, 2871-2875.
-
(1992)
Nucl. Acids Res.
, vol.20
, pp. 2871-2875
-
-
Pesole, G.1
Prunella, N.2
Liuni, S.3
Attimonelli, M.4
Saccone, C.5
-
41
-
-
0343597687
-
Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter
-
Pribnow, D. (1975) Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Proc. Natl. Acad. Sci. USA, 72, 784-788.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 784-788
-
-
Pribnow, D.1
-
42
-
-
0031684427
-
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
-
Rigoutsos, I. and Floratos, A. (1998) Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm. Bioinformatics, 14, 55-67.
-
(1998)
Bioinformatics
, vol.14
, pp. 55-67
-
-
Rigoutsos, I.1
Floratos, A.2
-
43
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
-
Robison, K., McGuire, A.M. and Church, G.M. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol., 284, 241-254.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 241-254
-
-
Robison, K.1
McGuire, A.M.2
Church, G.M.3
-
44
-
-
0018588890
-
Regulatory sequences involved in the promotion and termination of RNA transcription
-
Rosenberg, M. and Court, D. (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Annu. Rev. Genet., 13, 319-353.
-
(1979)
Annu. Rev. Genet.
, vol.13
, pp. 319-353
-
-
Rosenberg, M.1
Court, D.2
-
45
-
-
0026571052
-
A search for common patterns in many sequences
-
Roytberg, M.A. (1992) A search for common patterns in many sequences. Comput. Appl. Biosci., 8, 57-64.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 57-64
-
-
Roytberg, M.A.1
-
46
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA, 74, 5463-5467.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
47
-
-
0023042012
-
Information content of binding sites on nucleotide sequences
-
Schneider, T.D., Stormo, G.D., Gold, L. and Ehrenfeucht, A. (1986) Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188, 415-431.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfeucht, A.4
-
48
-
-
0020480249
-
A design for computer nucleic-acid sequence storage, retrieval and manipulation
-
Schneider, T.D., Stormo, G.D., Haemer, J.S. and Gold, L. (1982) A design for computer nucleic-acid sequence storage, retrieval and manipulation. Nucl. Acids Res., 10, 3013-3024.
-
(1982)
Nucl. Acids Res.
, vol.10
, pp. 3013-3024
-
-
Schneider, T.D.1
Stormo, G.D.2
Haemer, J.S.3
Gold, L.4
-
49
-
-
0030627987
-
Modeling transcription factor binding sites with Gibbs Sampling and Minimum Description Length encoding
-
Schug, J. and Overton, G.C. (1997) Modeling transcription factor binding sites with Gibbs Sampling and Minimum Description Length encoding. Intell. Sys. Mol. Biol., 5, 268-271.
-
(1997)
Intell. Sys. Mol. Biol.
, vol.5
, pp. 268-271
-
-
Schug, J.1
Overton, G.C.2
-
50
-
-
0016154301
-
The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
-
Shine, J. and Dalgarno, L. (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. USA, 71, 1342-1346.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 1342-1346
-
-
Shine, J.1
Dalgarno, L.2
-
51
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P.T., Sherlock, G., Zhang, M.Q., Iyer, V.R., Anders, K., Eisen, M.B., Brown, P.O., Botstein, D. and Futcher, B. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell., 9, 3273-3297.
-
(1998)
Mol. Biol. Cell.
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
52
-
-
0021760026
-
Computer methods to locate signals in nucleic acid sequences
-
Staden, R. (1984) Computer methods to locate signals in nucleic acid sequences. Nucl. Acids Res., 12, 505-519.
-
(1984)
Nucl. Acids Res.
, vol.12
, pp. 505-519
-
-
Staden, R.1
-
53
-
-
0024604438
-
Methods for calculating the probabilities of finding patterns in sequences
-
Staden, R. (1989) Methods for calculating the probabilities of finding patterns in sequences. Comput. Appl. Biosci., 5, 89-96.
-
(1989)
Comput. Appl. Biosci.
, vol.5
, pp. 89-96
-
-
Staden, R.1
-
54
-
-
0014666439
-
Polypeptide chain initiation: Nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA
-
Steitz, J.A. (1969) Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA. Nature, 224, 957-964.
-
(1969)
Nature
, vol.224
, pp. 957-964
-
-
Steitz, J.A.1
-
55
-
-
0023678091
-
Computer methods to identify recognition sequences
-
Stormo, G.D. (1988) Computer methods to identify recognition sequences. Ann. Rev. Biophys. Biophys. Chem., 17, 241-263.
-
(1988)
Ann. Rev. Biophys. Biophys. Chem.
, vol.17
, pp. 241-263
-
-
Stormo, G.D.1
-
56
-
-
0025342573
-
Consensus patterns in DNA
-
Stormo, G.D. (1990) Consensus patterns in DNA. Methods Enzymol., 183, 211-221.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 211-221
-
-
Stormo, G.D.1
-
57
-
-
0032032780
-
Specificity, free energy and information content in protein-DNA interactions
-
Stormo, G.D. and Fields, D.S. (1998) Specificity, free energy and information content in protein-DNA interactions. Trends Biochem. Sci., 23, 109-113.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 109-113
-
-
Stormo, G.D.1
Fields, D.S.2
-
58
-
-
0000133199
-
Identifying protein-binding sites from unaligned DNA fragments
-
Stormo, G.D. and Hartzell, G.W.III (1989) Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl. Acad. Sci. USA, 86, 1183-1187.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzell G.W. III2
-
59
-
-
0020480282
-
Characterization of translational initiation sites in E. coli
-
Stormo, G.D., Schneider, T.D. and Gold, L.M. (1982a) Characterization of translational initiation sites in E. coli. Nucl. Acids Res., 10, 2971-2996.
-
(1982)
Nucl. Acids Res.
, vol.10
, pp. 2971-2996
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.M.3
-
60
-
-
0023057575
-
Quantitative analysis of the relationship between nucleotide sequence and functional activity
-
Stormo, G.D., Schneider, T.D. and Gold, L. (1986) Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucl. Acids Res., 14, 6661-6679.
-
(1986)
Nucl. Acids Res.
, vol.14
, pp. 6661-6679
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.3
-
61
-
-
0020480251
-
Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli
-
Stormo, G.D., Schneider, T.D., Gold, L. and Ehrenfeucht, A. (1982b) Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. Nucl. Acids Res., 10, 2997-3012.
-
(1982)
Nucl. Acids Res.
, vol.10
, pp. 2997-3012
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.3
Ehrenfeucht, A.4
-
62
-
-
0029052383
-
Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions
-
Ulyanov, A. and Stormo, G.D. (1995) Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions. Nucl. Acids Res., 23, 1434-1440.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 1434-1440
-
-
Ulyanov, A.1
Stormo, G.D.2
-
63
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden, J., André, B. and Collodo-Vides, J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol., 281, 827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Van Helden, J.1
André, B.2
Collodo-Vides, J.3
-
64
-
-
0001211098
-
On the molecular bases of the specificity of interaction of transcriptional proteins with genome DNA
-
von Hippel, P.H. (1979) On the molecular bases of the specificity of interaction of transcriptional proteins with genome DNA. Biol. Regul. Develop., 1, 279-347.
-
(1979)
Biol. Regul. Develop.
, vol.1
, pp. 279-347
-
-
Von Hippel, P.H.1
-
65
-
-
0016593453
-
Sequence of the PR promoter of phage lambda
-
Walz, A. and Pirrotta, V. (1975) Sequence of the PR promoter of phage lambda. Nature, 254, 118-121.
-
(1975)
Nature
, vol.254
, pp. 118-121
-
-
Walz, A.1
Pirrotta, V.2
-
66
-
-
0029867505
-
Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
-
Wolfertstetter, F., Frech, K., Herrmann, G. and Werner, T. (1996) Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Comput. Appl. Biosci., 12, 71-80.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 71-80
-
-
Wolfertstetter, F.1
Frech, K.2
Herrmann, G.3
Werner, T.4
-
68
-
-
0027377256
-
A weight array method for splicing signal analysis
-
Zhang, M.Q. and Marr, T.G. (1993) A weight array method for splicing signal analysis. Comput. Appl. Biosci., 9, 499-509.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 499-509
-
-
Zhang, M.Q.1
Marr, T.G.2
-
69
-
-
0032861774
-
SCPD: A promoter database of the yeast Saccharomyces cerevisiae
-
Zhu, J. and Zhang, M.Q. (1999) SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics, 15, 607-611.
-
(1999)
Bioinformatics
, vol.15
, pp. 607-611
-
-
Zhu, J.1
Zhang, M.Q.2
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