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Volumn 34, Issue 15, 2006, Pages 4160-4167

Snf2 family ATPases and DExx box helicases: Differences and unifying concepts from high-resolution crystal structures

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; DEXX BOX HELICASE; DNA; HELICASE; PROTEIN SNF2; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SNF2 PROTEIN, S CEREVISIAE; TRANSCRIPTION FACTOR;

EID: 33749150994     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl540     Document Type: Review
Times cited : (92)

References (92)
  • 1
    • 0035997356 scopus 로고    scopus 로고
    • ATP-dependent nucleosome remodeling
    • Becker,P.B. and Horz,W. (2002) ATP-dependent nucleosome remodeling. Annu. Rev. Biochem., 71, 247-273.
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 247-273
    • Becker, P.B.1    Horz, W.2
  • 2
    • 0029157378 scopus 로고
    • Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
    • Eisen,J.A., Sweder,K.S. and Hanawalt,P.C. (1995) Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res., 23, 2715-2723.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2715-2723
    • Eisen, J.A.1    Sweder, K.S.2    Hanawalt, P.C.3
  • 3
    • 0026594528 scopus 로고
    • Molecular analysis of yeast chromosome II between CMD1 and LYS2: The excision repair gene RAD16 located in this region belongs to a novel group of double-finger proteins
    • Mannhaupt,G., Stucka,R., Ehnle,S., Vetter,I. and Feldmann,H. (1992) Molecular analysis of yeast chromosome II between CMD1 and LYS2: The excision repair gene RAD16 located in this region belongs to a novel group of double-finger proteins. Yeast, 8, 397-408.
    • (1992) Yeast , vol.8 , pp. 397-408
    • Mannhaupt, G.1    Stucka, R.2    Ehnle, S.3    Vetter, I.4    Feldmann, H.5
  • 4
    • 0026528477 scopus 로고
    • An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family
    • Laurent,B.C., Yang,X. and Carlson,M. (1992) An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family. Mol. Cell. Biol., 12, 1893-1902.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 1893-1902
    • Laurent, B.C.1    Yang, X.2    Carlson, M.3
  • 5
    • 0026538226 scopus 로고
    • A presumptive helicase (MOT1 gene product) affects gene expression and is required for viability in the yeast Saccharomyces cerevisiae
    • Davis,J.L., Kunisawa,R. and Thorner,J. (1992) A presumptive helicase (MOT1 gene product) affects gene expression and is required for viability in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol., 12, 1879-1892.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 1879-1892
    • Davis, J.L.1    Kunisawa, R.2    Thorner, J.3
  • 7
    • 0035313855 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling
    • Flaus,A. and Owen-Hughes,T. (2001) Mechanisms for ATP-dependent chromatin remodelling. Curr. Opin. Genet. Dev., 11, 148-154.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 148-154
    • Flaus, A.1    Owen-Hughes, T.2
  • 8
    • 33745122231 scopus 로고    scopus 로고
    • Identification of multiple distinct Snf2 subfamilies with conserved structural motifs
    • Flaus,A., Martin,D.M., Barton,G.J. and Owen-Hughes,T. (2006) Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res., 34, 2887-2905.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 2887-2905
    • Flaus, A.1    Martin, D.M.2    Barton, G.J.3    Owen-Hughes, T.4
  • 9
    • 15244346915 scopus 로고    scopus 로고
    • Swapping function of two chromatin remodeling complexes
    • Fan,H.Y., Trotter,K.W., Archer,T.K. and Kingston,R.E. (2005) Swapping function of two chromatin remodeling complexes. Mol. Cell. 17, 805-815.
    • (2005) Mol. Cell. , vol.17 , pp. 805-815
    • Fan, H.Y.1    Trotter, K.W.2    Archer, T.K.3    Kingston, R.E.4
  • 10
    • 0028467446 scopus 로고
    • Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex
    • Cote,J., Quinn,J., Workman,J.L. and Peterson,C.L. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science, 265, 53-60.
    • (1994) Science , vol.265 , pp. 53-60
    • Cote, J.1    Quinn, J.2    Workman, J.L.3    Peterson, C.L.4
  • 11
    • 0029787059 scopus 로고    scopus 로고
    • Diversity and specialization of mammalian SWI/SNF complexes
    • Wang,W., Xue,Y., Zhou,S., Kuo,A., Cairns,B.R. and Crabtree,G.R. (1996) Diversity and specialization of mammalian SWI/SNF complexes. Genes Dev., 10, 2117-2130.
    • (1996) Genes Dev. , vol.10 , pp. 2117-2130
    • Wang, W.1    Xue, Y.2    Zhou, S.3    Kuo, A.4    Cairns, B.R.5    Crabtree, G.R.6
  • 12
    • 0029562736 scopus 로고
    • Purification and properties of an ATP-Lependent nucleosome remodeling factor
    • Tsukiyama.T. and Wu,C. (1995) Purification and properties of an ATP-Lependent nucleosome remodeling factor. Cell, 83, 1011-1020.
    • (1995) Cell , vol.83 , pp. 1011-1020
    • Tsukiyama, T.1    Wu, C.2
  • 13
    • 0031444148 scopus 로고    scopus 로고
    • ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
    • Ito,T., Bulger,M., Pazin,M.J., Kobayashi,R. and Kadonaga,J.T. (1997) ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell, 90, 145-155.
    • (1997) Cell , vol.90 , pp. 145-155
    • Ito, T.1    Bulger, M.2    Pazin, M.J.3    Kobayashi, R.4    Kadonaga, J.T.5
  • 14
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodelling complex involved in transcription and DNA processing
    • Shen,X, Mizuguchi,G., Hamiche,A. and Wu,C. (2000) A chromatin remodelling complex involved in transcription and DNA processing. Nature, 406, 541-544.
    • (2000) Nature , vol.406 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Wu, C.4
  • 16
    • 0033082238 scopus 로고    scopus 로고
    • Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits
    • Phelan,M.L., Sif,S., Narlikar,G.J. and Kingston,R.E. (1999) Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Mol. Cell, 3, 247-253.
    • (1999) Mol. Cell , vol.3 , pp. 247-253
    • Phelan, M.L.1    Sif, S.2    Narlikar, G.J.3    Kingston, R.E.4
  • 17
    • 0037102562 scopus 로고    scopus 로고
    • Chromatin remodeling by RSC involves ATP-dependent DNA translocation
    • Saha,A., Wittmeyer,J. and Cairns,B.R. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev., 16, 2120-2134.
    • (2002) Genes Dev. , vol.16 , pp. 2120-2134
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 18
    • 0034657071 scopus 로고    scopus 로고
    • The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor
    • Tran,H.G., Steger,D.J., Iyer,V.R. and Johnson,A.D. (2000) The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. EMBO J., 19, 2323-2331.
    • (2000) EMBO J. , vol.19 , pp. 2323-2331
    • Tran, H.G.1    Steger, D.J.2    Iyer, V.R.3    Johnson, A.D.4
  • 19
    • 0032492853 scopus 로고    scopus 로고
    • Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins
    • Petukhova,G., Stratton,S. and Sung,P. (1998) Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins. Nature, 393, 91-94.
    • (1998) Nature , vol.393 , pp. 91-94
    • Petukhova, G.1    Stratton, S.2    Sung, P.3
  • 20
    • 0033519641 scopus 로고    scopus 로고
    • Structure and ligand of a histone acetyltransferase bromodomain
    • Dhalluin,C., Carlson,J.E., Zeng,L., He,C., Aggarwal,A.K. and Zhou,M.M. (1999) Structure and ligand of a histone acetyltransferase bromodomain. Nature, 399, 491-496.
    • (1999) Nature , vol.399 , pp. 491-496
    • Dhalluin, C.1    Carlson, J.E.2    Zeng, L.3    He, C.4    Aggarwal, A.K.5    Zhou, M.M.6
  • 21
    • 85047671736 scopus 로고    scopus 로고
    • The SANT domain: A putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB
    • Aasland,R., Stewart,A.F. and Gibson,T. (1996) The SANT domain: A putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB. Trends Biochem. Sci., 21, 87-88.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 87-88
    • Aasland, R.1    Stewart, A.F.2    Gibson, T.3
  • 22
    • 0037925529 scopus 로고    scopus 로고
    • A SANT motif in the SMRT corepressor interprets the histone code and promotes histone deacetylation
    • Yu,J., Li,Y., Ishizuka,T., Guenther,M.G. and Lazar,M.A. (2003) A SANT motif in the SMRT corepressor interprets the histone code and promotes histone deacetylation. EMBO J., 22, 3403-3410.
    • (2003) EMBO J. , vol.22 , pp. 3403-3410
    • Yu, J.1    Li, Y.2    Ishizuka, T.3    Guenther, M.G.4    Lazar, M.A.5
  • 23
    • 0141922979 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI
    • Grune,T., Brzeski,J., Eberharter,A., Clapier,C.R., Corona,D.F., Becker,P.B. and Muller,C.W. (2003) Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol. Cell, 12, 449-460.
    • (2003) Mol. Cell , vol.12 , pp. 449-460
    • Grune, T.1    Brzeski, J.2    Eberharter, A.3    Clapier, C.R.4    Corona, D.F.5    Becker, P.B.6    Muller, C.W.7
  • 24
    • 0036809731 scopus 로고    scopus 로고
    • Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes
    • Boyer,L.A., Langer,M.R., Crowley,K.A., Tan,S., Denu,J.M. and Peterson,C.L. (2002) Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol. Cell, 10, 935-942.
    • (2002) Mol. Cell , vol.10 , pp. 935-942
    • Boyer, L.A.1    Langer, M.R.2    Crowley, K.A.3    Tan, S.4    Denu, J.M.5    Peterson, C.L.6
  • 26
    • 13444267442 scopus 로고    scopus 로고
    • Chdl chromodomain links histone H3 methylation with SAGA and SLIK-dependent acetylation
    • Pray-Grant,M.G., Daniel,J.A., Schieltz,D., Yates,J.R.III and Grant,P.A. (2005) Chdl chromodomain links histone H3 methylation with SAGA and SLIK-dependent acetylation. Nature, 433, 434-438.
    • (2005) Nature , vol.433 , pp. 434-438
    • Pray-Grant, M.G.1    Daniel, J.A.2    Schieltz, D.3    Yates III, J.R.4    Grant, P.A.5
  • 27
    • 29644433964 scopus 로고    scopus 로고
    • Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains
    • Sims,R.J.III, Chen,C.F., Santos-Rosa, H., Kouzarides,T., Patel,S.S. and Reinberg,D. (2005) Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem, 280, 41789-41792.
    • (2005) J. Biol. Chem , vol.280 , pp. 41789-41792
    • Sims III, R.J.1    Chen, C.F.2    Santos-Rosa, H.3    Kouzarides, T.4    Patel, S.S.5    Reinberg, D.6
  • 28
    • 0033866836 scopus 로고    scopus 로고
    • Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila
    • Akhtar,A. and Becker,P.B. (2000) Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila. Mol. Cell, 5, 367-375.
    • (2000) Mol. Cell , vol.5 , pp. 367-375
    • Akhtar, A.1    Becker, P.B.2
  • 29
    • 0037093537 scopus 로고    scopus 로고
    • The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization
    • Bouazoune,K., Mitterweger,A., Langst,G., Imhof,A., Akhtar,A., Becker,P.B. and Brehm,A. (2002) The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization. EMBO J., 21, 2430-2440.
    • (2002) EMBO J. , vol.21 , pp. 2430-2440
    • Bouazoune, K.1    Mitterweger, A.2    Langst, G.3    Imhof, A.4    Akhtar, A.5    Becker, P.B.6    Brehm, A.7
  • 30
    • 0035893255 scopus 로고    scopus 로고
    • RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription
    • Sukhodolets,M.V., Cabrera,J.E., Zhi,H. and Jin,D.J. (2001) RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription. Genes Dev., 15, 3330-3341.
    • (2001) Genes Dev. , vol.15 , pp. 3330-3341
    • Sukhodolets, M.V.1    Cabrera, J.E.2    Zhi, H.3    Jin, D.J.4
  • 31
    • 0030835671 scopus 로고    scopus 로고
    • Molecular analysis of the SNF2/SW12 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA
    • Auble,D.T., Wang,D., Post,K.W. and Hahn,S. (1997) Molecular analysis of the SNF2/SW12 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA. Mol. Cell. Biol., 17, 4842-4851.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 4842-4851
    • Auble, D.T.1    Wang, D.2    Post, K.W.3    Hahn, S.4
  • 32
    • 18944372568 scopus 로고    scopus 로고
    • Motl-mediated control of transcription complex assembly and activity
    • Dasgupta,A., Juedes,S.A., Sprouse,R.O. and Auble,D.T. (2005) Motl-mediated control of transcription complex assembly and activity, EMBO J., 24, 1717-1729.
    • (2005) EMBO J. , vol.24 , pp. 1717-1729
    • Dasgupta, A.1    Juedes, S.A.2    Sprouse, R.O.3    Auble, D.T.4
  • 33
    • 0037326318 scopus 로고    scopus 로고
    • Rescue of arrested RNA polymerase II complexes
    • Svejstrup,J.Q. (2003) Rescue of arrested RNA polymerase II complexes. J. Cell. Sci., 116, 447-451.
    • (2003) J. Cell. Sci. , vol.116 , pp. 447-451
    • Svejstrup, J.Q.1
  • 34
    • 0036712428 scopus 로고    scopus 로고
    • When machines get stuck - Obstructed RNA polymerase II: Displacement, degradation or suicide
    • van den Boom,V., Jaspers,N.G. and Vermeulen,W. (2002) When machines get stuck - obstructed RNA polymerase II: Displacement, degradation or suicide. Bioessays, 24, 780-784.
    • (2002) Bioessays , vol.24 , pp. 780-784
    • van den Boom, V.1    Jaspers, N.G.2    Vermeulen, W.3
  • 37
    • 0842281646 scopus 로고    scopus 로고
    • The yeast Rad7/Rad16/Abfl complex generates superhelical torsion in DNA that is required for nucleotide excision repair
    • Yu,S., Owen-Hughes,T., Friedberg,E.C., Waters,R. and Reed,S.H. (2004) The yeast Rad7/Rad16/Abfl complex generates superhelical torsion in DNA that is required for nucleotide excision repair. DNA Repair (Amst), 3, 277-287.
    • (2004) DNA Repair (Amst) , vol.3 , pp. 277-287
    • Yu, S.1    Owen-Hughes, T.2    Friedberg, E.C.3    Waters, R.4    Reed, S.H.5
  • 38
    • 0027295019 scopus 로고
    • The yeast SNF2/SW12 protein has DNA-stimulated ATPase activity required for transcriptional activation
    • Laurent,B.C., Treich,I. and Carlson,M. (1993) The yeast SNF2/SW12 protein has DNA-stimulated ATPase activity required for transcriptional activation. Genes Dev., 7, 583-591.
    • (1993) Genes Dev. , vol.7 , pp. 583-591
    • Laurent, B.C.1    Treich, I.2    Carlson, M.3
  • 39
    • 0029809505 scopus 로고    scopus 로고
    • Functional analysis of the DNA-stimulated ATPase domain of yeast SWI2/SNF2
    • Richmond,E. and Peterson,C.L. (1996) Functional analysis of the DNA-stimulated ATPase domain of yeast SWI2/SNF2. Nucleic Acids Res., 24, 3685-3692.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3685-3692
    • Richmond, E.1    Peterson, C.L.2
  • 40
    • 0032561336 scopus 로고    scopus 로고
    • The human RAD54 recombinational DNA repair protein is a double-stranded DNA-dependent ATPase
    • Swagemakers,S.M., Essers,J., de Wit,J., Hoeijmakers,J.H. and Kanaar,R. (1998) The human RAD54 recombinational DNA repair protein is a double-stranded DNA-dependent ATPase. J. Biol. Chem., 273, 28292-28297.
    • (1998) J. Biol. Chem. , vol.273 , pp. 28292-28297
    • Swagemakers, S.M.1    Essers, J.2    de Wit, J.3    Hoeijmakers, J.H.4    Kanaar, R.5
  • 41
    • 0033635247 scopus 로고    scopus 로고
    • Superhelicity-driven homologous DNA pairing by yeast recombination factors Rad51 and Rad54
    • Van Komen,S., Petukhova,G., Sigurdsson,S., Stratton,S. and Sung,P. (2000) Superhelicity-driven homologous DNA pairing by yeast recombination factors Rad51 and Rad54. Mol. Cell, 6, 563-572.
    • (2000) Mol. Cell , vol.6 , pp. 563-572
    • Van Komen, S.1    Petukhova, G.2    Sigurdsson, S.3    Stratton, S.4    Sung, P.5
  • 42
    • 0035902524 scopus 로고    scopus 로고
    • The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA
    • Ristic,D., Wyman,C., Paulusma,C. and Kanaar,R. (2001) The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA. Proc. Natl Acad. Sci. USA, 98, 8454-4860.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 4860-8454
    • Ristic, D.1    Wyman, C.2    Paulusma, C.3    Kanaar, R.4
  • 43
    • 18844457346 scopus 로고    scopus 로고
    • X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA
    • Durr,H., Korner,C., Muller,M., Hickmann,V. and Hopfner,K.P. (2005) X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA. Cell, 121, 363-373.
    • (2005) Cell , vol.121 , pp. 363-373
    • Durr, H.1    Korner, C.2    Muller, M.3    Hickmann, V.4    Hopfner, K.P.5
  • 47
    • 0032832810 scopus 로고    scopus 로고
    • Yeast Rad54 promotes Rad51-dependent homologous DNA pairing via ATP hydrolysis-driven change in DNA double helix conformation
    • Petukhova,G., Van Komen,S., Vergano,S., Klein,H. and Sung,P. (1999) Yeast Rad54 promotes Rad51-dependent homologous DNA pairing via ATP hydrolysis-driven change in DNA double helix conformation. J. Biol. Chem., 274, 29453-29462.
    • (1999) J. Biol. Chem. , vol.274 , pp. 29453-29462
    • Petukhova, G.1    Van Komen, S.2    Vergano, S.3    Klein, H.4    Sung, P.5
  • 48
    • 0034704235 scopus 로고    scopus 로고
    • Generation of superhelical torsion by ATP-dependent chromatin remodeling activities
    • Havas,K., Flaus,A., Phelan,M., Kingston,R., Wade,P.A., Lilley,D.M. and Owen-Hughes,T. (2000) Generation of superhelical torsion by ATP-dependent chromatin remodeling activities. Cell, 103, 1133-1142.
    • (2000) Cell , vol.103 , pp. 1133-1142
    • Havas, K.1    Flaus, A.2    Phelan, M.3    Kingston, R.4    Wade, P.A.5    Lilley, D.M.6    Owen-Hughes, T.7
  • 49
    • 0038100136 scopus 로고    scopus 로고
    • Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin
    • Jaskelioff,M., Van Komen,S., Krebs,J.E., Sung,P. and Peterson,C.L. (2003) Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J. Biol. Chem., 278, 9212-9218.
    • (2003) J. Biol. Chem. , vol.278 , pp. 9212-9218
    • Jaskelioff, M.1    Van Komen, S.2    Krebs, J.E.3    Sung, P.4    Peterson, C.L.5
  • 51
    • 0033515425 scopus 로고    scopus 로고
    • Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
    • Velankar,S.S., Soultanas,P., Dillingham,M.S., Subramanya,H.S. and Wigley,D.B. (1999) Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell, 97, 75-84.
    • (1999) Cell , vol.97 , pp. 75-84
    • Velankar, S.S.1    Soultanas, P.2    Dillingham, M.S.3    Subramanya, H.S.4    Wigley, D.B.5
  • 52
    • 0032518490 scopus 로고    scopus 로고
    • Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
    • Kim,J.L., Morgenstern,K.A., Griffith,J.P., Dwyer,M.D., Thomson,J.A., Murcko,M.A., Lin,C. and Caron,P.R. (1998) Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding. Structure, 6, 89-100.
    • (1998) Structure , vol.6 , pp. 89-100
    • Kim, J.L.1    Morgenstern, K.A.2    Griffith, J.P.3    Dwyer, M.D.4    Thomson, J.A.5    Murcko, M.A.6    Lin, C.7    Caron, P.R.8
  • 53
    • 0035812836 scopus 로고    scopus 로고
    • Structural analysis of DNA replication fork reversal by RecG
    • Singleton,M.R., Scaife,S. and Wigley,D.B. (2001) Structural analysis of DNA replication fork reversal by RecG. Cell, 107, 79-89.
    • (2001) Cell , vol.107 , pp. 79-89
    • Singleton, M.R.1    Scaife, S.2    Wigley, D.B.3
  • 54
    • 33646017369 scopus 로고    scopus 로고
    • Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
    • Sengoku.T. Nureki.O.. Nakamura.A.. Kohavashi.S and Yokoyama.S. (2066) Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell, 125, 287-300.
    • (2066) Cell , vol.125 , pp. 287-300
    • Sengoku, T.1    Nureki, O.2    Nakamura, A.3    Kohavashi, S.4    Yokoyama, S.5
  • 56
    • 0036211179 scopus 로고    scopus 로고
    • Modularity and specialization in superfamily 1 and 2 helicases
    • Singleton,M.R. and Wigley,D.B. (2002) Modularity and specialization in superfamily 1 and 2 helicases. J. Bacteriol., 184, 1819-1826.
    • (2002) J. Bacteriol. , vol.184 , pp. 1819-1826
    • Singleton, M.R.1    Wigley, D.B.2
  • 57
    • 0034870450 scopus 로고    scopus 로고
    • Structure-based mutational analysis of the hepatitis C virus NS3 helicase
    • Tai.C.L.. Pan.W.C.. Liaw,S.H.. Yang.U.C.. Hwang.L.H. and Chen.D.S. (2001) Structure-based mutational analysis of the hepatitis C virus NS3 helicase. J. Virol., 75, 8289-8297.
    • (2001) J. Virol. , vol.75 , pp. 8289-8297
    • Tai, C.L.1    Pan, W.C.2    Liaw, S.H.3    Yang, U.C.4    Hwang, L.H.5    Chen, D.S.6
  • 58
    • 3042795879 scopus 로고    scopus 로고
    • Direct evidence that a conserved arginine in RuvB AAA+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer
    • Hishida,T., Han,Y.W., Fujimoto,S., Iwasaki,H. and Shinagawa,H. (2004) Direct evidence that a conserved arginine in RuvB AAA+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer. Proc. Natl Acad. Sci. USA, 101, 9573-9577.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 9573-9577
    • Hishida, T.1    Han, Y.W.2    Fujimoto, S.3    Iwasaki, H.4    Shinagawa, H.5
  • 59
    • 0034679815 scopus 로고    scopus 로고
    • Uncoupling DNA translocation and helicase activity in PcrA: Direct evidence for an active mechanism
    • Soultanas,P., Dillingham,M.S., Wiley,P., Webb,M.R. and Wigley,D.B. (2000) Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism. EMBO J., 19, 3799-3810.
    • (2000) EMBO J. , vol.19 , pp. 3799-3810
    • Soultanas, P.1    Dillingham, M.S.2    Wiley, P.3    Webb, M.R.4    Wigley, D.B.5
  • 60
    • 17144385089 scopus 로고    scopus 로고
    • DNA binding by the substrate specificity (wedge) domain of RecG helicase suggests a role in processivity
    • Briggs,G.S., Mahdi,A.A., Wen,Q. and Lloyd,R.G. (2005) DNA binding by the substrate specificity (wedge) domain of RecG helicase suggests a role in processivity. J. Biol., Chem., 280, 13921-13927.
    • (2005) J. Biol. Chem. , vol.280 , pp. 13921-13927
    • Briggs, G.S.1    Mahdi, A.A.2    Wen, Q.3    Lloyd, R.G.4
  • 61
    • 20444440763 scopus 로고    scopus 로고
    • A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase
    • Levin,M.K., Gurjar,M. and Patel,S.S. (2005) A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase. Nature Struct. Mol. Biol., 12, 429-435.
    • (2005) Nature Struct. Mol. Biol. , vol.12 , pp. 429-435
    • Levin, M.K.1    Gurjar, M.2    Patel, S.S.3
  • 62
    • 3342896727 scopus 로고    scopus 로고
    • Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase
    • Serebrov,V. and Pyle,A.M. (2004) Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase. Nature, 430, 476-480.
    • (2004) Nature , vol.430 , pp. 476-480
    • Serebrov, V.1    Pyle, A.M.2
  • 63
    • 0037415719 scopus 로고    scopus 로고
    • A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins
    • Mahdi,A.A., Briggs,G.S., Sharples,G.J., Wen,Q. and Lloyd,R.G. (2003) A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins. EMBO J., 22, 724-734.
    • (2003) EMBO J. , vol.22 , pp. 724-734
    • Mahdi, A.A.1    Briggs, G.S.2    Sharples, G.J.3    Wen, Q.4    Lloyd, R.G.5
  • 64
    • 0038607629 scopus 로고    scopus 로고
    • ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase
    • Levin,M.K., Gurjar,M.M. and Patel,S.S. (2003) ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase. J. Biol. Chem., 278, 23311-23316.
    • (2003) J. Biol. Chem. , vol.278 , pp. 23311-23316
    • Levin, M.K.1    Gurjar, M.M.2    Patel, S.S.3
  • 66
    • 0025363116 scopus 로고
    • Superfamily of UvrA-related NTP-binding proteins. Implications for rational classification of recombination/repair systems
    • Gorbalenya,A.E. and Koonin,E.V. (1990) Superfamily of UvrA-related NTP-binding proteins. Implications for rational classification of recombination/repair systems. J. Mol. Biol., 213, 583-591.
    • (1990) J. Mol. Biol. , vol.213 , pp. 583-591
    • Gorbalenya, A.E.1    Koonin, E.V.2
  • 69
    • 33645739547 scopus 로고    scopus 로고
    • Snf2/Swi2-related ATPase Motl drives displacement of TATA-binding protein by gripping DNA
    • Sprouse,R.O., Brenowitz,M. and Auble,D.T. (2006) Snf2/Swi2-related ATPase Motl drives displacement of TATA-binding protein by gripping DNA. EMBO J., 25, 1492-1504.
    • (2006) EMBO J. , vol.25 , pp. 1492-1504
    • Sprouse, R.O.1    Brenowitz, M.2    Auble, D.T.3
  • 71
    • 26944461283 scopus 로고    scopus 로고
    • Chromatin remodeling through directional DNA translocation from an internal nucleosomal site
    • Saha,A., Wittmeyer,J. and Cairns,B.R. (2005) Chromatin remodeling through directional DNA translocation from an internal nucleosomal site. Nature Struct. Mol. Biol., 12, 747-755.
    • (2005) Nature Struct. Mol. Biol. , vol.12 , pp. 747-755
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 73
    • 0028850059 scopus 로고
    • Overcoming a nucleosomal barrier to transcription
    • Studitsky,V.M., Clark,D.J. and Felsenfeld,G. (1995) Overcoming a nucleosomal barrier to transcription. Cell, 83, 19-27.
    • (1995) Cell , vol.83 , pp. 19-27
    • Studitsky, V.M.1    Clark, D.J.2    Felsenfeld, G.3
  • 74
    • 1042288540 scopus 로고    scopus 로고
    • Electron microscopic analysis of the RSC chromatin remodeling complex
    • Asturias,F.J., Ezeokonkwo,C., Kornberg,R.D. and Lorch,Y. (2004) Electron microscopic analysis of the RSC chromatin remodeling complex. Meth. Enzymol., 376, 48-62.
    • (2004) Meth. Enzymol. , vol.376 , pp. 48-62
    • Asturias, F.J.1    Ezeokonkwo, C.2    Kornberg, R.D.3    Lorch, Y.4
  • 76
    • 0344938355 scopus 로고    scopus 로고
    • The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains
    • Bazett-Jones,D.P., Cote,J., Landel,C.C., Peterson,C.L. and Workman,J.L. (1999) The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains. Mol. Cell. Biol., 19, 1470-1478.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1470-1478
    • Bazett-Jones, D.P.1    Cote, J.2    Landel, C.C.3    Peterson, C.L.4    Workman, J.L.5
  • 77
    • 33744916194 scopus 로고    scopus 로고
    • Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome
    • Zofall,M., Persinger,J., Kassabov,S.R. and Bartholomew,B. (2006) Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nature Struct. Mol. Biol., 13, 339-346.
    • (2006) Nature Struct. Mol. Biol. , vol.13 , pp. 339-346
    • Zofall, M.1    Persinger, J.2    Kassabov, S.R.3    Bartholomew, B.4
  • 78
    • 2942561969 scopus 로고    scopus 로고
    • Topography of the ISW2-nueleosome complex: Insights into nucleosome spacing and chromatin remodeling
    • Kagalwala M N Glaus,B.J., Dang,W., Zofall,M. and Bartholomew.B. (2004) Topography of the ISW2-nueleosome complex: Insights into nucleosome spacing and chromatin remodeling. EMBO J., 23, 2092-2104.
    • (2004) EMBO J. , vol.23 , pp. 2092-2104
    • Kagalwala, M.N.1    Glaus, B.J.2    Dang, W.3    Zofall, M.4    Bartholomew, B.5
  • 79
    • 0032927875 scopus 로고    scopus 로고
    • Testing for DNA tracking by MOTI, a SNF2/SWI2 protein family member
    • Auble,D.T. and Steggerda,S.M. (1999) Testing for DNA tracking by MOTI, a SNF2/SWI2 protein family member. Mol. Cell. Biol., 19, 412-423.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 412-423
    • Auble, D.T.1    Steggerda, S.M.2
  • 81
    • 27644514163 scopus 로고    scopus 로고
    • Repetitive shuttling of a motor protein on DNA
    • Myong,S., Rasnik,I., Joo,C., Lohman,T.M. and Ha,T. (2005) Repetitive shuttling of a motor protein on DNA. Nature, 437, 1321-1325.
    • (2005) Nature , vol.437 , pp. 1321-1325
    • Myong, S.1    Rasnik, I.2    Joo, C.3    Lohman, T.M.4    Ha, T.5
  • 82
    • 30144436268 scopus 로고    scopus 로고
    • RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP
    • Dumont,S., Cheng,W., Serebrov,V., Beran,R.K., Tinoco,I.,Jr, Pyle,A.M. and Bustamante,C. (2006) RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP. Nature, 439, 105-108.
    • (2006) Nature , vol.439 , pp. 105-108
    • Dumont, S.1    Cheng, W.2    Serebrov, V.3    Beran, R.K.4    Tinoco Jr., I.5    Pyle, A.M.6    Bustamante, C.7
  • 83
    • 0026584855 scopus 로고
    • Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription
    • Peterson,C.L. and Herskowitz,I. (1992) Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell, 68, 573-583.
    • (1992) Cell , vol.68 , pp. 573-583
    • Peterson, C.L.1    Herskowitz, I.2
  • 84
    • 0345016384 scopus 로고    scopus 로고
    • Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase, II
    • Morillon,A., Karabetsou,N., O'Sullivan,J., Kent,N., Proudfoot,N. and Mellor,J. (2003) Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase, II. Cell, 115, 425-435.
    • (2003) Cell , vol.115 , pp. 425-435
    • Morillon, A.1    Karabetsou, N.2    O'Sullivan, J.3    Kent, N.4    Proudfoot, N.5    Mellor, J.6
  • 85
    • 0034721670 scopus 로고    scopus 로고
    • The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
    • Goldmark,J.P., Fazzio,T.G., Estep,P.W., Church,G.M. and Tsukiyama,T. (2000) The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell, 103, 423-433.
    • (2000) Cell , vol.103 , pp. 423-433
    • Goldmark, J.P.1    Fazzio, T.G.2    Estep, P.W.3    Church, G.M.4    Tsukiyama, T.5
  • 86
    • 0345698603 scopus 로고    scopus 로고
    • Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes
    • Simic,R., Lindstrom,D.L., Tran,H.G., Roinick,K.L., Costa,P.J., Johnson,A.D., Hartzog,G.A. and Arndt,K.M. (2003) Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J., 22, 1846-1856.
    • (2003) EMBO J. , vol.22 , pp. 1846-1856
    • Simic, R.1    Lindstrom, D.L.2    Tran, H.G.3    Roinick, K.L.4    Costa, P.J.5    Johnson, A.D.6    Hartzog, G.A.7    Arndt, K.M.8
  • 87
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi,G, Shen,X., Landry,J., Wu,W.H., Sen,S. and Wu,C. (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science, 303, 343-348.
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 88
    • 0028038315 scopus 로고
    • Motl, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism
    • Auble,D.T., Hansen,K.E., Mueller,C.G., Lane,W.S., Thorner,J. and Hahn,S. (1994) Motl, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev., 8, 1920-1934.
    • (1994) Genes Dev. , vol.8 , pp. 1920-1934
    • Auble, D.T.1    Hansen, K.E.2    Mueller, C.G.3    Lane, W.S.4    Thorner, J.5    Hahn, S.6
  • 89
    • 0030786807 scopus 로고    scopus 로고
    • Characterization of the roles of the Saccharomyces cerevisiae RAD54 gene and a homologue of RAD54, RDH54/TID1, in mitosis and meiosis
    • Shinohara,M., Shita-Yamaguchi,E., Buerstedde,J.M., Shinagawa,H., Ogawa,H. and Shinohara,A. (1997) Characterization of the roles of the Saccharomyces cerevisiae RAD54 gene and a homologue of RAD54, RDH54/ TID1, in mitosis and meiosis. Genetics, 147, 1545-1556.
    • (1997) Genetics , vol.147 , pp. 1545-1556
    • Shinohara, M.1    Shita-Yamaguchi, E.2    Buerstedde, J.M.3    Shinagawa, H.4    Ogawa, H.5    Shinohara, A.6
  • 90
    • 0030878003 scopus 로고    scopus 로고
    • The RAD5 gene product is involved in the avoidance of non-homologous end-joining of DNA double strand breaks in the yeast Saccharomyces cerevisiae
    • Ahne,F., Jha,B. and Eckardt-Schupp,F. (1997) The RAD5 gene product is involved in the avoidance of non-homologous end-joining of DNA double strand breaks in the yeast Saccharomyces cerevisiae. Nucleic Acids Res., 25, 743-749.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 743-749
    • Ahne, F.1    Jha, B.2    Eckardt-Schupp, F.3
  • 91
    • 0026580654 scopus 로고
    • Identification of RAD16, a yeast excision repair gene homologous to the recombinational repair gene RAD54 and to the SNF2 gene involved in transcriptional activation
    • Schild,D., Glassner,B.J., Mortimer,R.K., Carlson,M. and Laurent,B.C. (1992) Identification of RAD16, a yeast excision repair gene homologous to the recombinational repair gene RAD54 and to the SNF2 gene involved in transcriptional activation. Yeast, 8, 385-395.
    • (1992) Yeast , vol.8 , pp. 385-395
    • Schild, D.1    Glassner, B.J.2    Mortimer, R.K.3    Carlson, M.4    Laurent, B.C.5
  • 92
    • 0030848286 scopus 로고    scopus 로고
    • Identification of a member of a DNA-dependent ATPase family that causes interference with silencing
    • Zhang,Z. and Buchman,A.R. (1997) Identification of a member of a DNA-dependent ATPase family that causes interference with silencing. Mol. Cell. Biol., 17, 5461-5472.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 5461-5472
    • Zhang, Z.1    Buchman, A.R.2


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