Testing for DNA tracking by MOT1, a SNF2/SWI2 protein family member

Molecular and Cellular Biology

Volumn 19, Issue 1, 1999, Pages 412-423

  Auble, David T ^a   Steggerda, Susanne M ^a  

^a UNIVERSITY OF VIRGINIA HEALTH SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; FUNGAL DNA; TATA BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; DNA DETERMINATION; DNA FOOTPRINTING; DNA PROTEIN COMPLEX; DNA TEMPLATE; NONHUMAN; PHOSPHATE METABOLISM; PRIORITY JOURNAL; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; TATA BOX;

SACCHAROMYCES CEREVISIAE;

EID: 0032927875     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.19.1.412     Document Type: Article

References (48)

1. Auble, D. T. Unpublished observations.
2. Auble, D. T., and S. Hahn. 1993. An ATP-dependent inhibitor of TBP binding to DNA. Genes Dev. 7:844-856.
3. Auble, D. T., K. E. Hansen, C. G. F. Mueller, W. S. Lane, J. Thorner, and S. Hahn. 1994. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1920-1934.
4. Auble, D. T., D. Wang, K. W. Post, and S. Hahn. 1997. Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA. Mol. Cell. Biol. 17: 4842-4851.
5. Brown, S. A., and R. E. Kingston. 1997. Disruption of downstream chromatin by a transcriptional activator. Genes Dev. 11:3116-3121.
6. Cairns, B. R., Y. Lorch, Y. Li, M. Zhang, L. Lacomis, H. Erdjument-Bromage, P. Tempst, J. Du, B. Laurent, and R. D. Kornberg, 1996. RSC, an essential, abundant chromatin-remodeling complex. Cell 87:1249-1260.
7. Chicca, J. J. I., D. T. Auble, and B. F. Pugh. 1998. Cloning and biochemical characterization of TAF-172. a human homolog of yeast MOT1. Mol. Cell. Biol. 18:1701-1710.
8. Cote, J., J. Quinn, J. L. Workman, and C. L. Peterson. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265:53-60.
9. Cox, J. M., M. M. Hayward, J. F. Sanchez, L. D. Gegnas, S. van der Zee, J. H. Dennis, P. B. Sigler, and A. Schepartz. 1997. Bidirectional binding of the TATA box binding protein to the TATA box. Proc. Natl. Acad. Sci. USA 94:13475-13480.
10. Deuschle, U., R. A. Hipskind, and H. Bujard. 1990. RNA polymerase II transcription blocked by Escherichia coli lac repressor. Science 248:480-483.
11. Eisen, J. A., K. S. Sweder, and P. C. Hanawalt. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:2715-2723.
12. Elfring, L. K., R. Deuring, C. M. McCallum, C. L. Peterson, and J. W. Tamkun. 1994. Identification and characterization of Drosophila relatives of yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14:2225-2234.
13. Fu, T.-J., G. M. Sanders, M. O'Donnell, and E. P. Geiduschek. 1996. Dynamics of DNA-tracking by two sliding-clamp proteins. EMBO J. 15:4414-4422.
14. Gelles, J., and R. Landick. 1998. RNA polymerase as a molecular motor. Cell 93:13-16.
15. Gorbalenya, E. G., E. V. Koonin, A. P. Donchenko, and V. M. Blinov. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713-4730.
16. Guzder, S. N., P. Sung, L. Prakash, and S. Prakash. 1997. Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor. J. Biol. Chem. 272:21665-21668.
17. Henikoff, S. 1993. Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family. Trends Biochem. Sci. 18:291-292.
18. Hoopes, B. C., J. F. LeBlanc, and D. K. Hawley. 1992. Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J. Biol. Chem. 267:11539-11547.
19. Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370: 481-485.
20. Ito, T., M. Bulger, M. J. Pazin, R. Kobayashi, and J. T. Kadonaga. 1997. ACF. an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90:145-155.
21. Kadonaga, J. T. 1998. Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell 92:307-313.
22. Khavari, P. A., C. L. Peterson, J. W. Tamkun, D. B. Mendel, and G. R. Crabtree. 1993. BRG1 contains a conserved domain of the SW12/SNF2 family necessary for normal mitotic growth and transcription. Nature 366: 170-174.
23. Kim, Y., J. H. Geiger, S. Hahn, and P. B. Sigler. 1993 Crystal structure of a yeast TBP/TATA-box complex. Nature 365:512-520.
24. King, K., S. J. Benkovic, and P. Modrich. 1989. Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease. J. Biol. Chem. 264:11807-11815.
25. Kwon, H., A. N. Imbalzano, P. A. Khavari, R. E. Kingston, and M. R. Green. 1994. Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370:477-481.
26. Laurent, B. C., I. Treich, and M. Carlson. 1993. The yeast SNF2/SW12 protein has DNA-stimulated ATPase activity required for transcriptional activation. Genes Dev. 7:583-591.
27. Lewis, M., G. Chang, N. C. Horton, M. A. Kercher, H. C. Pace, M. A. Schumacher, R. G. Brennan, and P. Lu. 1996. Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science 271: 1247-1254.
28. Lohman, T. M., K. Thorn, and R. D. Vale. 1998. Staying on track: common features of DNA helicases and microtubule motors. Cell 93:9-12.
29. Mizuguchi, G., T. Tsukiyama, J. Wisniewski, and C. Wu. 1997. Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin. Mol. Cell 1:141-150.
30. Owen-Hughes, T., R. T. Utley, C. L. Peterson, and J. L. Workman. 1996. Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273:513-516.
31. Pazin, M. J., and J. T. Kadonaga. 1997. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell 88:737-740.
32. Petukhova, G., S. Stratton, and P. Sung. 1998. Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins. Nature 393:91-94.
33. Reddy, P., and S. Hahn. 1991. Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region. Cell 65:349-357.
34. Riggs, A. D., S. Bourgeois, and M. Conn. 1970. lac repressor-operator interaction. III. Kinetic studies. J. Mol. Biol. 53:401-417.
35. Riggs, A. D., H. Suzuki, and S. Bourgeois. 1970. lac repressor-operator interaction. I. Equilibrium studies. J. Mol. Biol. 48:67-83.
36. Sadler, J. R., H. Sasmor, and J. L. Belz. 1983. A perfectly symmetric lac operator binds the lac repressor very tightly. Proc. Natl. Acad. Sci. USA 80:6785-6789.
37. Simons, A., D. Tils, B. von Wilcken-Bergmann, and B. Muller-Hill. 1984. Possible ideal lac operator: Escherichia coli lac operator-like sequences from eukaryotic genomes lack the central G-C pair. Proc. Natl. Acad. Sci. USA 81:1624-1628.
38. Strubin, M., and K. Struhl. 1992. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell 68:721-730.
39. Syroid, D. E., and J. P. Capone. 1994. RNA chain elongation and termination by mammalian RNA polymerase III. Analysis of tRNA gene transcription by imposing a reversible factor-mediated block to elongation usine a sequence-specific DNA binding protein. J. Mol. Biol. 244:482-493.
40. Tantin, D., A. Kansal, and M. Carey. 1997. Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes. Mol. Cell. Biol. 17:6803-6814.
41. Tinker, R. L., G. A. Kassavetis, and E. P. Geiduschek. 1994. Detecting the ability of viral, bacterial and eukaryotic replication proteins to track along DNA. EMBO J. 13:5330-5337.
42. Tinker-Kulberg, R. L., T.-J. Fu, E. P. Geiduschek, and G. A. Kassavetis. 1996. A direct interaction between a DNA-tracking protein and a promoter recognition protein: implications for searching DNA sequence. EMBO J. 15:5032-5039.
43. Tsukiyama, T., C. Daniel, J. Tamkun, and C. Wu. 1995. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1026.
44. Tsukiyama, T., and C. Wu. 1997. Chromatin remodeling and transcription. Curr. Opin. Genet. Dev. 7:182-191.
45. Utley, R. T., J. Cote, T. Owen-Hughes, and J. Workman. 1997. SWI/SNF stimulates the formation of disparate activator-nucleosome complexes but is partially redundant with cooperative binding. J. Biol. Chem. 272:12642-12649.
46. Varga-Weisz, P. D., M. Wilm, E. Bonte, K. Dumas, M. Mann, and P. B. Becker. 1997. Chromatin-remodeling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388:598-602.
47. Wang, D., and D. T. Auble. Unpublished observations.
48. Winter, R. B., O. G. Berg, and P. H. von Hippel. 1981. Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: kinetic measurements and conclusions. Biochemistry 20:6961-6977.