Mechanisms for ATP-dependent chromatin remodelling

Current Opinion in Genetics and Development

Volumn 11, Issue 2, 2001, Pages 148-154

  Flaus, A ^a   Owen Hughes, T ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; HELICASE;

CHEMICAL MODIFICATION; CHROMATIN; CHROMATIN CONDENSATION; CHROMATIN STRUCTURE; GENE CONTROL; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; REVIEW; STRUCTURE ANALYSIS; TRANSCRIPTION REGULATION;

EID: 0035313855     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-437X(00)00172-6     Document Type: Review

References (71)

1. Alteration of nucleosome structure as a mechanism of transcriptional regulation
2. The language of covalent histone modifications
3. Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
4. ATP-dependent chromatin-remodeling complexes
5. Helicases: Amino acid sequence comparisons and structure-function relationships
6. Helicase motifs: The engine that powers DNA unwinding
7. Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates
8. The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI
9. Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy
10. DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI
11. Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement
12. Mouse Rad54 affects DNA conformation and DNA-damage-induced Rad51 foci formation
13. Yeast Rad54 promotes Rad51-dependent homologous DNA pairing via ATP hydrolysis-driven change in DNA double helix conformation
14. Superhelicitydriven homologous DNA pairing by yeast recombination factors Rad51 and Rad54
15. The generation of superhelical torsion by ATP-dependent chromatin remodelling activities
16. ISWI is an ATP-dependent nucleosome remodeling factor
17. Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits
18. Octamer transfer and creation of stably remodeled nucleosomes by human SWI-SNF and its isolated ATPases
19. ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex
20. Functional delineation of three groups of the ATP-dependent family of chromatin remodeling enzymes
21. dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties
22. A eukaryotic SWI2/SNF2 domain, an exquisite detector of double-stranded to single-stranded DNA transition elements
23. Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA
24. Promoter targeting and chromatin remodeling by the SWI/SNF complex
25. ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF
26. Nucleosome movement by CHRAC and ISWI without disruption or trans- displacement of the histone octamer
27. Nucleosome mobilization catalysed by the yeast SWI/SNF complex
28. SWI-SNF-mediated nucleosome remodeling: Role of histone octamer mobility in the persistence of the remodeled state
29. ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex
30. Crystal structure of the nucleosome core particle at 2.8 Å resolution
31. Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
32. Overcoming a nucleosomal barrier to transcription
33. The stablility of a human SWI/SNF remodeled nucleosomal array
34. Activated RSC nucleosome complex a persistently altered form of the nucleosome
35. Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state
36. Histone octamer transfer by a chromatin-remodelling complex
37. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II
38. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
39. Dissecting the regulatory circuitry of a eukaryotic genome
40. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
41. Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter
42. Cell cycle-regulated histone acetylation required for expression of the yeast HO gene
43. Global role for chromatin remodeling enzymes in mitotic gene expression
44. The core histone N-termini function independently of linker histones during chromatin condensation
45. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity
46. The 'dark side' of chromatin remodeling: Repressive effects on transcription
47. Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system
48. The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor
49. Methylation-induced repression - Belts, braces, and chromatin
50. The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo
51. Active remodeling of somatic nuclei in egg cytoplasm by the nucleosomal ATPase ISWI
52. In vitro chromatin remodelling by chromatin accessibility complex (CHRAC) at the SV40 origin of DNA replication
53. A chromatin remodelling complex involved in transcription and DNA processing
54. Crystal structure of a DExx box DNA helicase
55. Structure of the hepatitis C virus RNA helicase domain
56. Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases
57. Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix
58. Multiple sequence alignment with hierarchical clustering
59. SWI/SNF chromatin remodelling requires changes in DNA topology
60. RSC unravels the nucleosome
61. ATP driven chromatin remodelling activity and histone acetyltransferases act sequentially during transactivation by RAR/RXR in vitro
62. The GCN5 bromodomain co ordinates nucleosome remodelling
63. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter
64. A BRG1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes
65. BRG1, a component of the SWI-SNF complex, is mutated in multiple human tumor cell lines
66. BRCA1 is associated with a human SWI/SNF-related complex: Linking chromatin remodelling to breast cancer
67. Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer