-
1
-
-
0035997356
-
ATP-dependent nucleosome remodeling
-
Becker PB, Hörz W (2002) ATP-dependent nucleosome remodeling. Annu Rev Biochem 71: 247-273
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 247-273
-
-
Becker, P.B.1
Hörz, W.2
-
3
-
-
18344410319
-
dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties
-
Brehm A, Langst G, Kehle J, Clapier CR, Imhof A, Eberharter A, Muller J, Becker PB (2000) dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties. EMBO J 19: 4332-4341
-
(2000)
EMBO J
, vol.19
, pp. 4332-4341
-
-
Brehm, A.1
Langst, G.2
Kehle, J.3
Clapier, C.R.4
Imhof, A.5
Eberharter, A.6
Muller, J.7
Becker, P.B.8
-
4
-
-
0034700086
-
Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
-
Caruthers JM, Johnson ER, McKay DB (2000) Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase. Proc Natl Acad Sci USA 97: 13080-13085
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13080-13085
-
-
Caruthers, J.M.1
Johnson, E.R.2
McKay, D.B.3
-
5
-
-
0037436410
-
Chromatin fiber folding: Requirement for the histone H4 N-terminal tail
-
Dorigo B, Schalch T, Bystricky K, Richmond TJ (2003) Chromatin fiber folding: requirement for the histone H4 N-terminal tail. J Mol Biol 327: 85-96
-
(2003)
J Mol Biol
, vol.327
, pp. 85-96
-
-
Dorigo, B.1
Schalch, T.2
Bystricky, K.3
Richmond, T.J.4
-
6
-
-
0345276461
-
Chromatin remodeling in vivo: Evidence for a nucleosome sliding mechanism
-
Fazzio TG, Tsukiyama T (2003) Chromatin remodeling in vivo: evidence for a nucleosome sliding mechanism. Mol Cell 12: 1333-1340
-
(2003)
Mol Cell
, vol.12
, pp. 1333-1340
-
-
Fazzio, T.G.1
Tsukiyama, T.2
-
7
-
-
0032103910
-
Unique translational positioning of nucleosomes on synthetic DNAs
-
Fitzgerald DJ, Anderson JN (1998) Unique translational positioning of nucleosomes on synthetic DNAs. Nucleic Acids Res 26: 2526-2535
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2526-2535
-
-
Fitzgerald, D.J.1
Anderson, J.N.2
-
8
-
-
0029928550
-
Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
-
Flaus A, Luger K, Tan S, Richmond TJ (1996) Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proc Natl Acad Sci USA 93: 1370-1375
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1370-1375
-
-
Flaus, A.1
Luger, K.2
Tan, S.3
Richmond, T.J.4
-
9
-
-
0035313855
-
Mechanisms for ATP-dependent chromatin remodelling
-
Flaus A, Owen-Hughes T (2001) Mechanisms for ATP-dependent chromatin remodelling. Curr Opin Genet Dev 11: 148-154
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 148-154
-
-
Flaus, A.1
Owen-Hughes, T.2
-
10
-
-
0037158744
-
Dynamics of ATP-dependent chromatin assembly by ACF
-
Fyodorov DV, Kadonaga JT (2002) Dynamics of ATP-dependent chromatin assembly by ACF. Nature 418: 896-900
-
(2002)
Nature
, vol.418
, pp. 896-900
-
-
Fyodorov, D.V.1
Kadonaga, J.T.2
-
11
-
-
0038381469
-
Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase
-
Gaillard H, Fitzgerald DJ, Smith CL, Peterson CL, Richmond TJ, Thoma F (2003) Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem 278: 17655-17663
-
(2003)
J Biol Chem
, vol.278
, pp. 17655-17663
-
-
Gaillard, H.1
Fitzgerald, D.J.2
Smith, C.L.3
Peterson, C.L.4
Richmond, T.J.5
Thoma, F.6
-
12
-
-
0035016612
-
Interactions of ISW2 chromatin remodeling complex with nucleosomal arrays: Analyses using recombinant yeast histones and immobilized templates
-
Gelbart ME, Rechsteiner T, Richmond TJ, Tsukiyama T (2001) Interactions of ISW2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Mol Cell Biol 21: 2098-2106
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2098-2106
-
-
Gelbart, M.E.1
Rechsteiner, T.2
Richmond, T.J.3
Tsukiyama, T.4
-
13
-
-
0027182114
-
Helicases: Amino acid sequence comparisons and structure-function relationships
-
Gorbalenya AE, Koonin EV (1993) Helicases: amino acid sequence comparisons and structure-function relationships. Curr Opin Struct Biol 3: 419-429
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
14
-
-
0037195926
-
The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states
-
Henn A, Shi S-P, Zarivach R, Ben-Zeev E, Sagi I (2002) The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states. J Biol Chem 277: 46559-46565
-
(2002)
J Biol Chem
, vol.277
, pp. 46559-46565
-
-
Henn, A.1
Shi, S.-P.2
Zarivach, R.3
Ben-Zeev, E.4
Sagi, I.5
-
15
-
-
0027373139
-
Interactions of bacteriophage T7 DNA primase/helicase protein with single-stranded and double-stranded DNAs
-
Hingorani MM, Patel SS (1993) Interactions of bacteriophage T7 DNA primase/helicase protein with single-stranded and double-stranded DNAs. Biochemistry 32: 12478-12487
-
(1993)
Biochemistry
, vol.32
, pp. 12478-12487
-
-
Hingorani, M.M.1
Patel, S.S.2
-
16
-
-
0346363763
-
Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae
-
Iida T, Araki H (2004) Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae. Mol Cell Biol 24: 217-227
-
(2004)
Mol Cell Biol
, vol.24
, pp. 217-227
-
-
Iida, T.1
Araki, H.2
-
17
-
-
0038100136
-
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin
-
Jaskelioff M, Van Komen S, Krebs JE, Sung P, Peterson CL (2003) Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem 278: 9212-9218
-
(2003)
J Biol Chem
, vol.278
, pp. 9212-9218
-
-
Jaskelioff, M.1
Van Komen, S.2
Krebs, J.E.3
Sung, P.4
Peterson, C.L.5
-
18
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293: 1074-1080
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
19
-
-
2942561969
-
Topography of the ISW2-nucleosome complex: Insights into nucleosome spacing and chromatin remodeling
-
Kagalwala MN, Glaus BJ, Dang W, Zofall M, Bartholomew B (2004) Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling. EMBO J 23: 2092-2104
-
(2004)
EMBO J
, vol.23
, pp. 2092-2104
-
-
Kagalwala, M.N.1
Glaus, B.J.2
Dang, W.3
Zofall, M.4
Bartholomew, B.5
-
20
-
-
0036837670
-
High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2
-
Kassabov SR, Henry NM, Zofall M, Tsukiyama T, Bartholomew B (2002) High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2. Mol Cell Biol 22: 7524-7534
-
(2002)
Mol Cell Biol
, vol.22
, pp. 7524-7534
-
-
Kassabov, S.R.1
Henry, N.M.2
Zofall, M.3
Tsukiyama, T.4
Bartholomew, B.5
-
21
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim JL, Morgenstern KA, Griffith JP, Dwyer MD, Thomson JA, Murcko MA, Lin C, Caron PR (1998) Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure 6: 89-100
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
Morgenstern, K.A.2
Griffith, J.P.3
Dwyer, M.D.4
Thomson, J.A.5
Murcko, M.A.6
Lin, C.7
Caron, P.R.8
-
22
-
-
0030740262
-
Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP
-
Korolev S, Hsieh J, Gauss GH, Lohman TM, Waksman G (1997) Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell 90: 635-647
-
(1997)
Cell
, vol.90
, pp. 635-647
-
-
Korolev, S.1
Hsieh, J.2
Gauss, G.H.3
Lohman, T.M.4
Waksman, G.5
-
23
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman TM, Bjornson KP (1996) Mechanisms of helicase-catalyzed DNA unwinding. Annu Rev Biochem 65: 169-214
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
24
-
-
0033289822
-
Expression and purification of recombinant histones and nucleosome reconstitution
-
Luger K, Rechsteiner TJ, Richmond TJ (1999) Expression and purification of recombinant histones and nucleosome reconstitution. Methods Mol Biol 119: 1-16
-
(1999)
Methods Mol Biol
, vol.119
, pp. 1-16
-
-
Luger, K.1
Rechsteiner, T.J.2
Richmond, T.J.3
-
25
-
-
0037418195
-
Yeast Rad17/Mec3/Ddc1: A sliding clamp for the DNA damage checkpoint
-
Majka J, Burgers PMJ (2003) Yeast Rad17/Mec3/Ddc1: a sliding clamp for the DNA damage checkpoint. Proc Natl Acad Sci USA 100: 2249-2254
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 2249-2254
-
-
Majka, J.1
Burgers, P.M.J.2
-
26
-
-
0034479416
-
Crawling and wiggling on DNA: Structural insights to the mechanism of DNA unwinding by helicases
-
Marians KJ (2000) Crawling and wiggling on DNA: structural insights to the mechanism of DNA unwinding by helicases. Structure 8: R227-R235
-
(2000)
Structure
, vol.8
-
-
Marians, K.J.1
-
27
-
-
1642321066
-
Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo
-
McConnell AD, Gelbart ME, Tsukiyama T (2004) Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo. Mol Cell Biol 24: 2605-2613
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2605-2613
-
-
McConnell, A.D.1
Gelbart, M.E.2
Tsukiyama, T.3
-
28
-
-
0034948011
-
DNA and ATP binding activities of the baculovirus DNA helicase P143
-
McDougal VV, Guarino LA (2001) DNA and ATP binding activities of the baculovirus DNA helicase P143. J Virol 75: 7206-7209
-
(2001)
J Virol
, vol.75
, pp. 7206-7209
-
-
McDougal, V.V.1
Guarino, L.A.2
-
29
-
-
0022429092
-
Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors
-
Menetski JP, Kowalczykowski SC (1985) Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors. J Mol Biol 181: 281-295
-
(1985)
J Mol Biol
, vol.181
, pp. 281-295
-
-
Menetski, J.P.1
Kowalczykowski, S.C.2
-
30
-
-
0037102562
-
Chromatin remodeling by RSC involves ATP-dependent DNA translocation
-
Saha A, Wittmeyer J, Cairns BR (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16: 2120-2134
-
(2002)
Genes Dev
, vol.16
, pp. 2120-2134
-
-
Saha, A.1
Wittmeyer, J.2
Cairns, B.R.3
-
31
-
-
0032716810
-
Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7
-
Sawaya MR, Guo S, Tabor S, Richardson CC, Ellenberger T (1999) Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7. Cell 99: 167-177
-
(1999)
Cell
, vol.99
, pp. 167-177
-
-
Sawaya, M.R.1
Guo, S.2
Tabor, S.3
Richardson, C.C.4
Ellenberger, T.5
-
32
-
-
0034625236
-
Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides
-
Singleton MR, Sawaya MR, Ellenberger T, Wigley DB (2000) Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell 101: 589-600
-
(2000)
Cell
, vol.101
, pp. 589-600
-
-
Singleton, M.R.1
Sawaya, M.R.2
Ellenberger, T.3
Wigley, D.B.4
-
33
-
-
0034679815
-
Uncoupling DNA translocation and helicase activity in PcrA: Direct evidence for an active mechanism
-
Soultanas P, Dillingham MS, Wiley P, Webb MR, Wigley DB (2000) Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism. EMBO J 19: 3799-3810
-
(2000)
EMBO J
, vol.19
, pp. 3799-3810
-
-
Soultanas, P.1
Dillingham, M.S.2
Wiley, P.3
Webb, M.R.4
Wigley, D.B.5
-
34
-
-
0026584599
-
Structure of the recA protein-ADP complex
-
Story RM, Steitz TA (1992) Structure of the recA protein-ADP complex. Nature 355: 374-376
-
(1992)
Nature
, vol.355
, pp. 374-376
-
-
Story, R.M.1
Steitz, T.A.2
-
35
-
-
0031451329
-
Mechanism of transcription through the nucleosome by eukaryotic RNA polymerase
-
Studitsky VM, Kassavetis GA, Geiduschek EP, Felsenfeld G (1997) Mechanism of transcription through the nucleosome by eukaryotic RNA polymerase. Science 278: 1960-1963
-
(1997)
Science
, vol.278
, pp. 1960-1963
-
-
Studitsky, V.M.1
Kassavetis, G.A.2
Geiduschek, E.P.3
Felsenfeld, G.4
-
36
-
-
0039837085
-
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
-
Thåström A, Lowary PT, Widlund HR, Cao H, Kubista M, Widom J (1999) Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J Mol Biol 288: 213-229
-
(1999)
J Mol Biol
, vol.288
, pp. 213-229
-
-
Thåström, A.1
Lowary, P.T.2
Widlund, H.R.3
Cao, H.4
Kubista, M.5
Widom, J.6
-
37
-
-
0033558873
-
Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae
-
Tsukiyama T, Palmer J, Landel CC, Shiloach J, Wu C (1999) Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae. Genes Dev 13: 686-697
-
(1999)
Genes Dev
, vol.13
, pp. 686-697
-
-
Tsukiyama, T.1
Palmer, J.2
Landel, C.C.3
Shiloach, J.4
Wu, C.5
-
38
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar SS, Soultanas P, Dillingham MS, Subramanya HS, Wigley DB (1999) Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97: 75-84
-
(1999)
Cell
, vol.97
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
39
-
-
0030848285
-
Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding
-
Walstrom KM, Dozono JM, von Hippel PH (1997) Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding. Biochemistry 36: 7993-8004
-
(1997)
Biochemistry
, vol.36
, pp. 7993-8004
-
-
Walstrom, K.M.1
Dozono, J.M.2
Von Hippel, P.H.3
-
40
-
-
0037370303
-
Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme
-
Whitehouse I, Stockdale C, Flaus A, Szczelkun MD, Owen-Hughes T (2003) Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme. Mol Cell Biol 23: 1935-1945
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1935-1945
-
-
Whitehouse, I.1
Stockdale, C.2
Flaus, A.3
Szczelkun, M.D.4
Owen-Hughes, T.5
-
41
-
-
0026546001
-
Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding
-
Wong I, Lohman TM (1992) Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding. Science 256: 350-355
-
(1992)
Science
, vol.256
, pp. 350-355
-
-
Wong, I.1
Lohman, T.M.2
-
42
-
-
0035852703
-
Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8
-
Yamada K, Kunishima N, Mayanagi K, Ohnishi T, Nishino T, Iwasaki H, Shinagawa H, Morikawa K (2001) Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8. Proc Natl Acad Sci USA 98: 1442-1447
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1442-1447
-
-
Yamada, K.1
Kunishima, N.2
Mayanagi, K.3
Ohnishi, T.4
Nishino, T.5
Iwasaki, H.6
Shinagawa, H.7
Morikawa, K.8
|