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Volumn 23, Issue 10, 2004, Pages 2092-2104

Topography of the ISW2-nucleosome complex: Insights into nucleosome spacing and chromatin remodeling

Author keywords

Chromatin; Chromatin remodeling; ISW2; ISWI; Nucleosome

Indexed keywords

CELL NUCLEUS DNA; HISTONE;

EID: 2942561969     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.emboj.7600220     Document Type: Article
Times cited : (118)

References (42)
  • 2
    • 0036928142 scopus 로고    scopus 로고
    • A role for chromatin remodeling in transcriptional termination by RNA polymerase II
    • Alen C, Kent NA, Jones HS, O'Sullivan J, Aranda A, Proudfoot NJ (2002) A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Mol Cell 10: 1441-1452
    • (2002) Mol Cell , vol.10 , pp. 1441-1452
    • Alen, C.1    Kent, N.A.2    Jones, H.S.3    O'Sullivan, J.4    Aranda, A.5    Proudfoot, N.J.6
  • 3
    • 0032544035 scopus 로고    scopus 로고
    • DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone
    • Balasubramanian B, Pogozelski WK, Tullius TD (1998) DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone. Proc Natl Acad Sci USA 95: 9738-9743
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9738-9743
    • Balasubramanian, B.1    Pogozelski, W.K.2    Tullius, T.D.3
  • 4
    • 0035997356 scopus 로고    scopus 로고
    • ATP-dependent nucleosome remodeling
    • Becker PB, Horz W (2002) ATP-dependent nucleosome remodeling. Annu Rev Biochem 71: 247-273
    • (2002) Annu Rev Biochem , vol.71 , pp. 247-273
    • Becker, P.B.1    Horz, W.2
  • 5
    • 18344410319 scopus 로고    scopus 로고
    • dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties
    • Brehm A, Langst G, Kehle J, Clapier CR, Imhof A, Eberharter A, Muller J, Becker PB (2000) dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties. EMBO J 19: 4332-4341
    • (2000) EMBO J , vol.19 , pp. 4332-4341
    • Brehm, A.1    Langst, G.2    Kehle, J.3    Clapier, C.R.4    Imhof, A.5    Eberharter, A.6    Muller, J.7    Becker, P.B.8
  • 7
    • 0036464569 scopus 로고    scopus 로고
    • A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI
    • Clapier CR, Nightingale KP, Becker PB (2002) A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI. Nucleic Acids Res 30: 649-655
    • (2002) Nucleic Acids Res , vol.30 , pp. 649-655
    • Clapier, C.R.1    Nightingale, K.P.2    Becker, P.B.3
  • 8
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
    • Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. J Mol Biol 319: 1097-1113
    • (2002) J Mol Biol , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 10
    • 0023882299 scopus 로고
    • A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA
    • Ebralidse KK, Grachev SA, Mirzabekov AD (1988) A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA. Nature 331: 365-367
    • (1988) Nature , vol.331 , pp. 365-367
    • Ebralidse, K.K.1    Grachev, S.A.2    Mirzabekov, A.D.3
  • 11
    • 0029157378 scopus 로고
    • Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
    • Eisen JA, Sweder KS, Hanawalt PC (1995) Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res 23: 2715-2723
    • (1995) Nucleic Acids Res , vol.23 , pp. 2715-2723
    • Eisen, J.A.1    Sweder, K.S.2    Hanawalt, P.C.3
  • 12
    • 0028327575 scopus 로고
    • Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2
    • Elfring LK, Deuring R, McCallum CM, Peterson CL, Tamkun JW (1994) Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol Cell Biol 14: 2225-2234
    • (1994) Mol Cell Biol , vol.14 , pp. 2225-2234
    • Elfring, L.K.1    Deuring, R.2    McCallum, C.M.3    Peterson, C.L.4    Tamkun, J.W.5
  • 13
    • 0034817393 scopus 로고    scopus 로고
    • Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
    • Fazzio TG, Kooperberg C, Goldmark JP, Neal C, Basom R, Delrow J, Tsukiyama T (2001) Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Mol Cell Biol 21: 6450-6460
    • (2001) Mol Cell Biol , vol.21 , pp. 6450-6460
    • Fazzio, T.G.1    Kooperberg, C.2    Goldmark, J.P.3    Neal, C.4    Basom, R.5    Delrow, J.6    Tsukiyama, T.7
  • 14
    • 0034721670 scopus 로고    scopus 로고
    • The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
    • Goldmark JP, Fazzio TG, Estep PW, Church GM, Tsukiyama T (2000) The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell 103: 423-433
    • (2000) Cell , vol.103 , pp. 423-433
    • Goldmark, J.P.1    Fazzio, T.G.2    Estep, P.W.3    Church, G.M.4    Tsukiyama, T.5
  • 15
    • 0141922979 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI
    • Grune T, Brzeski J, Eberharter A, Clapier CR, Corona DF, Becker PB, Muller CW (2003) Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol Cell 12: 449-460
    • (2003) Mol Cell , vol.12 , pp. 449-460
    • Grune, T.1    Brzeski, J.2    Eberharter, A.3    Clapier, C.R.4    Corona, D.F.5    Becker, P.B.6    Muller, C.W.7
  • 17
    • 0033603238 scopus 로고    scopus 로고
    • ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF
    • Hamiche A, Sandaltzopoulos R, Gdula DA, Wu C (1999) ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF. Cell 97: 833-842
    • (1999) Cell , vol.97 , pp. 833-842
    • Hamiche, A.1    Sandaltzopoulos, R.2    Gdula, D.A.3    Wu, C.4
  • 18
    • 0037086537 scopus 로고    scopus 로고
    • GAL4 directs nucleosome sliding induced by NURF
    • Kang JG, Hamiche A, Wu C (2002) GAL4 directs nucleosome sliding induced by NURF. EMBO J 21: 1406-1413
    • (2002) EMBO J , vol.21 , pp. 1406-1413
    • Kang, J.G.1    Hamiche, A.2    Wu, C.3
  • 19
    • 0036837670 scopus 로고    scopus 로고
    • High Resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2
    • Kassabov SR, Henry NM, Zofall M, Tsukiyama T, Bartholomew B (2002) High Resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2. Mol Cell Biol 22: 7524-7534
    • (2002) Mol Cell Biol , vol.22 , pp. 7524-7534
    • Kassabov, S.R.1    Henry, N.M.2    Zofall, M.3    Tsukiyama, T.4    Bartholomew, B.5
  • 21
    • 0035281586 scopus 로고    scopus 로고
    • In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p
    • Kent NA, Karabetsou N, Politis PK, Mellor J (2001) In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p. Genes Dev 15: 619-626
    • (2001) Genes Dev , vol.15 , pp. 619-626
    • Kent, N.A.1    Karabetsou, N.2    Politis, P.K.3    Mellor, J.4
  • 22
    • 0035930334 scopus 로고    scopus 로고
    • ISWI induces nucleosome sliding on nicked DNA
    • Langst G, Becker PB (2001a) ISWI induces nucleosome sliding on nicked DNA. Mol Cell 8: 1085-1092
    • (2001) Mol Cell , vol.8 , pp. 1085-1092
    • Langst, G.1    Becker, P.B.2
  • 23
    • 0034902187 scopus 로고    scopus 로고
    • Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors
    • Langst G, Becker PB (2001b) Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors. J Cell Sci 114: 2561-2568
    • (2001) J Cell Sci , vol.114 , pp. 2561-2568
    • Langst, G.1    Becker, P.B.2
  • 24
    • 0033603212 scopus 로고    scopus 로고
    • Nucleosome movement by CHRAC and ISWI without disruption or transdisplacement of the histone octamer
    • Langst G, Bonte EJ, Corona DF, Becker PB (1999) Nucleosome movement by CHRAC and ISWI without disruption or transdisplacement of the histone octamer. Cell 97: 843-852
    • (1999) Cell , vol.97 , pp. 843-852
    • Langst, G.1    Bonte, E.J.2    Corona, D.F.3    Becker, P.B.4
  • 25
    • 0023663417 scopus 로고
    • Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones
    • Lorch Y, LaPointe JW, Kornberg RD (1987) Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49: 203-210
    • (1987) Cell , vol.49 , pp. 203-210
    • Lorch, Y.1    LaPointe, J.W.2    Kornberg, R.D.3
  • 26
    • 0033524939 scopus 로고    scopus 로고
    • Histone octamer transfer by a chromatin-remodeling complex
    • Lorch Y, Zhang M, Kornberg RD (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96: 389-392
    • (1999) Cell , vol.96 , pp. 389-392
    • Lorch, Y.1    Zhang, M.2    Kornberg, R.D.3
  • 27
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
    • Lowary PT, Widom J (1998) New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J Mol Biol 276: 19-42
    • (1998) J Mol Biol , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 28
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389: 251-260
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 29
    • 0038771223 scopus 로고    scopus 로고
    • Regulated displacement of TBP from the PHO8 promoter in vivo requires Cbf1 and the Isw1 chromatin remodeling complex
    • Moreau JL, Lee M, Mahachi N, Vary J, Mellor J, Tsukiyama T, Goding CR (2003) Regulated displacement of TBP from the PHO8 promoter in vivo requires Cbf1 and the Isw1 chromatin remodeling complex. Mol Cell 11: 1609-1620
    • (2003) Mol Cell , vol.11 , pp. 1609-1620
    • Moreau, J.L.1    Lee, M.2    Mahachi, N.3    Vary, J.4    Mellor, J.5    Tsukiyama, T.6    Goding, C.R.7
  • 30
    • 0345016384 scopus 로고    scopus 로고
    • Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II
    • Morillon A, Karabetsou N, O'Sullivan J, Kent N, Proudfoot N, Mellor J (2003) Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II. Cell 115: 425-435
    • (2003) Cell , vol.115 , pp. 425-435
    • Morillon, A.1    Karabetsou, N.2    O'Sullivan, J.3    Kent, N.4    Proudfoot, N.5    Mellor, J.6
  • 32
    • 0033847208 scopus 로고    scopus 로고
    • Octamer transfer and creation of stably remodeled nucleosomes by human SWI-SNF and its isolated ATPases
    • Phelan ML, Schnitzler GR, Kingston RE (2000) Octamer transfer and creation of stably remodeled nucleosomes by human SWI-SNF and its isolated ATPases. Mol Cell Biol 20: 6380-6389
    • (2000) Mol Cell Biol , vol.20 , pp. 6380-6389
    • Phelan, M.L.1    Schnitzler, G.R.2    Kingston, R.E.3
  • 34
    • 0036844024 scopus 로고    scopus 로고
    • The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription
    • Santoro R, Li J, Grummt I (2002) The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription. Nat Genet 32: 393-396
    • (2002) Nat Genet , vol.32 , pp. 393-396
    • Santoro, R.1    Li, J.2    Grummt, I.3
  • 35
    • 0033377358 scopus 로고    scopus 로고
    • Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF
    • Sengupta SM, Persinger J, Bartholomew B, Peterson CL (1999) Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF. Methods 19: 434-446
    • (1999) Methods , vol.19 , pp. 434-446
    • Sengupta, S.M.1    Persinger, J.2    Bartholomew, B.3    Peterson, C.L.4
  • 36
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodelling complex involved in transcription and DNA processing
    • Shen X, Mizuguchi G, Hamiche A, Wu C (2000) A chromatin remodelling complex involved in transcription and DNA processing. Nature 406: 541-544
    • (2000) Nature , vol.406 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Wu, C.4
  • 37
    • 0033558873 scopus 로고    scopus 로고
    • Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae
    • Tsukiyama T, Palmer J, Landel CC, Shiloach J, Wu C (1999) Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae. Genes Dev 13: 686-697
    • (1999) Genes Dev , vol.13 , pp. 686-697
    • Tsukiyama, T.1    Palmer, J.2    Landel, C.C.3    Shiloach, J.4    Wu, C.5
  • 38
    • 0023623752 scopus 로고
    • Hydroxyl radical footprinting: A high-resolution method for mapping protein-DNA contacts
    • Tullius TD, Dombroski BA, Churchill ME, Kam L (1987) Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts. Methods Enzymol 155: 537-558
    • (1987) Methods Enzymol , vol.155 , pp. 537-558
    • Tullius, T.D.1    Dombroski, B.A.2    Churchill, M.E.3    Kam, L.4
  • 42
    • 0037009366 scopus 로고    scopus 로고
    • The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription
    • Zhou Y, Santoro R, Grummt I (2002) The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription. EMBO J 21: 4632-4640
    • (2002) EMBO J , vol.21 , pp. 4632-4640
    • Zhou, Y.1    Santoro, R.2    Grummt, I.3


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