Structural analysis of the yeast SWI/SNF chromatin remodeling complex

Nature Structural Biology

Volumn 10, Issue 2, 2003, Pages 141-145

  Smith, Corey L ^a   Horowitz Scherer, Rachel ^b   Flanagan, Joan F ^a   Woodcock, Christopher L ^b   Peterson, Craig L ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE;

ARTICLE; CHROMATIN STRUCTURE; IMAGE RECONSTRUCTION; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; RADIOIODINATION; SCANNING TRANSMISSION ELECTRON MICROSCOPY; STOICHIOMETRY; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING; YEAST;

CHROMATIN; DNA-BINDING PROTEINS; IMAGE PROCESSING, COMPUTER-ASSISTED; IODINE RADIOISOTOPES; MACROMOLECULAR SUBSTANCES; MICROSCOPY, ELECTRON, SCANNING TRANSMISSION; MODELS, MOLECULAR; MOLECULAR WEIGHT; NUCLEAR PROTEINS; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

EID: 0037315185     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: 10.1038/nsb888     Document Type: Article

References (18)

1. Peterson, C.L., & Tamkun, J.W. The SWI-SNF complex: a chromatin remodeling machine? Trends Biochem. Sci. 20, 143-146 (1995).
2. Fry, C.J., & Peterson, C.L. Chromatin remodeling enzymes: who's on first? Curr. Biol. 11, R185-R197 (2001).
3. Vignali, M., Hassan, A.H, Neely, K.E., & Workman, J.L. ATP-dependent chromatin-remodeling complexes. Mol. Cell. Biol. 20, 1899-1910 (2000).
4. Côté, J., Quinn, J., Workman, J., & Peterson, C. L. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265, 53-60 (1994).
5. Kwon, H., Imbalzano, A.N, Khavari, P.A., Kingston, R.E., & Green, M.R. Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex. Nature 370, 477-481 (1994).
6. Kelleher, D.J., & Gilmore, R. DAD1, the defender against apoptotic cell death, is a subunit of the mammalian oligosaccharyltransferase. Proc. Natl. Acad. Sci. USA 94, 4994-4999 (1997).
7. Rigaut, G. et al. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17, 1030-1032 (1999).
8. Tasto, J.J., Carnahan, R.H., McDonald, W.H., & Gould, K.L. Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe. Yeast 18, 657-662 (2001).
9. Wall, J.S., Hainfeld, J.F., & Simon, M. Scanning transmission electron microscopy of nuclear structures. Methods Cell Biol. 53, 139-164 (1998).
10. Schnitzler, G.R. et al. Direct imaging of human SWI/SNF-remodeled mono- and polynucleosomes by atomic force microscopy employing carbon nanotube tips. Mol. Cell. Biol. 21, 8504-8511 (2001).
11. Ludtke, S.J., Baldwin, P.R., & Chiu, W.J. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (1999).
12. Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F., & Richmond, T.J. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260 (1997).
13. Bazett-Jones, D.R, Côté, J., Landel, C.C., Peterson, C.L., & Workman, J.L. The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains. Mol. Cell. Biol. 19, 1470-1478 (1999).
14. Wall, J.S., & Hainfeld, J.F. Mass mapping with the scanning transmission electron microscope. Ann. Rev. Biophys. Biophys. Chem. 15, 355-376 (1986).
15. Hainfeld, J.F., Wall, J.S., & Desmond, E.J. A small computer system for micrograph analysis. Ultramlcroscopy 8, 263-270 (1982).
16. Woodcock, C.L., Woodcock, H., & Horowitz, R.A. Ultrastructure of chromatin. I. Negative staining of isolated fibers. J. Cell Sci. 99, 99-106 (1991).
17. 2+ and AMP-PCP. Biophys. J. 77, 1936-1944 (1999).
18. Asturias, EJ., Chung, W.H., Kornberg, R.D., & Lorch, Y. Structural analysis of the RSC chromatin-remodeling complex. Proc. Natl. Acad. Sci. USA 99, 13477-13480 (2002).