Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP- driven enzyme that dissociates TATA-binding protein from DNA

Molecular and Cellular Biology

Volumn 17, Issue 8, 1997, Pages 4842-4851

  Auble, David T ^a   Wang, Dongyan ^a   Post, Kai W ^a   Hahn, Steven ^b  

^a UNIVERSITY OF VIRGINIA HEALTH SYSTEM   (United States)

^b USA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; CHIMERIC PROTEIN; MICROORGANISM PROTEIN; TATA BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN DNA INTERACTION; PROTEIN FAMILY; PROTEIN TARGETING; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION REGULATION;

SACCHAROMYCES CEREVISIAE;

EID: 0030835671     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.8.4842     Document Type: Article

References (44)

1. Alberts, B., and R. Miake-Lye. 1992. Unscrambling the puzzle of biological machines: the importance of the details. Cell 68:415-420.
2. 1a.Auble, D. T. Unpublished data.
3. Auble, D. T., and S. Hahn. 1993. An ATP-dependent inhibitor of TBP binding to DNA. Genes Dev. 7:844-856.
4. Auble, D. T., K. E. Hansen, C. G. F. Mueller, W. S. Lane, J. Thorner, and S. Hahn. 1994. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1920-1934.
5. Bang, D. D., R. Verhage, N. Goosen. J. Brouwer, and P. van de Putte. 1992. Molecular cloning of RAD16, a gene involved in differential repair in Saccharomyces cerevisiae. Nucleic Acids Res. 20:3925-3931.
6. Collart, M. A. 1996. The NOT. SPT3. and MOT1 genes functionally interact to regulate transcription at core promoters. Mo1. Cell. Biol. 16:6668-6676.
7. Collart, M. A., and K. Struhl. 1994. NOT1(CDC39), NOT2(CDC36), NOT3, and NOT4 encode a global-negative regulator of transcription that differentially affects TATA-element utilization. Genes Dev. 8:525-537.
8. Cote, J., J. Quinn, J. L. Workman, and C. L. Peterson. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265:53-60.
9. Davis, J. L., R. Kunisawa, and J. Thorner. 1992. A presumptive helicase (MOT1 gene product) affects gene expression and is required for viability in the yeast Saccliammyces cerevisiae. Mo1. Cell. Biol. 12:1879-1892.
10. Eisen, J. A., K. S. Sweder, and P. C. Hanawalt. 1995. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:2715-2723.
11. Elfring, L. K., R. Deuring, C. M. McCallum, C. L. Peterson, and J. W. Tamkun. 1994. Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14:2225-2234.
12. Emery, H. S., D. Schild, D. E. Kellogg, and R. K. Mortimer. 1993. Sequence of RAD54, a Saccharomyces cererisiae gene involved in recombination repair. Gene 104:103-106.
13. Finer, J. T., R. M. Simmons, and J. A. Spudich. 1994. Single myosin molecule mechanics: piconcwlon forces and nanometer steps. Nature 368:113-119.
14. Girdham, C. H., and D. M. Glover. 1991. Chromosome tangling and breakage at anaphasc result from mutations in lodestar, a Drosophila gene encoding a putative nucleoside triphosphate-binding protein. Genes Dev. 5:1786-1799.
15. Grussenmeyer, T., K. H. Scheidtmann, M. A. Hutchinson, W. Eckhart, and G. Walter. 1985. Complexes of polyoma virus medium T antigen and cellular proteins. Proc. Nail. Acad. Sci. USA 82:7952-7954.
16. Guzder, S. N., Y. Habraken, P. Sung, L. Prakash, and S. Prakash. 1996. RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase. J. Biol. Chem. 271:18314-18317.
17. Harlow, E., and D. Lane. 1988. Antibodies. A laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
18. Henikoff, S. 1993. Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family. Trends Biochem. 18:291-292.
19. Hightower, L. E., S. E. Sadis, and I. M. Takenaka. 1994. Interactions of vertebrate hsc70 and hsp70 with unfolded proteins and peptides. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
20. Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370: 481-485.
21. Jiang, Y. W., and D. J. Stillman. 1996. Epigenetic effects on yeast transcription caused by mutations in an actin-related protein present in the nucleus. Genes Dev. 10:604-619.
22. Johnston, M., and R. W. Davis. 1984. Sequences that regulate the divergent GALl-GAL10 promoter in Saccharomyces cerevisiae. Mol. Cell. Biol. 4:1440-1448.
23. Jontes, J. D., E. M. Wilson-Kubalek, and R. A. Milligan. 1995. A 32 degree tail swing in brush horder mvosin I on ADP release. Nature 378:751-753.
24. Karnitz, L., M. Morrison, and E. T. Young. 1992. Identification and characterization of three genes that affect expression of ADH2 in Saccharomyces cerevisiae. Genetics 132:351-359.
25. Khavari, P. A., C. L. Peterson, J. W. Tamkun, D. B. Mendel, and G. R. Crabtree. 1993. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature 366: 170-174.
26. Kingston, R. E., C. A. Bunker, and A. N. Imbalzano. 1996. Repression and activation by multiprotein complexes that alter chromatin structure. Genes Dev. 10:905-920.
27. Kull, F. J., E. P. Sablin, R. Lau, R. J. Fletterick, and R. D. Vale. 1996. Crystal structure of the kinesin motor domain reveals a structural similarity to myosin. Nature 380:550-555.
28. Kwon, H., A. N. Imbalzano, P. A. Khavari, R. E. Kingston, and M. R. Green. 1994. Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370:477-481.
29. Laurent, B. C., I. Treich, and M. Carlson. 1993. The yeast SNF2/SWI2 protein has DNA-stimulated ATPase activity required for transcriptional activation. Genes Dev. 7:583-591.
30. Madison, J. M., and F. Winston. 1997. Evidence that Spt3 functionally interacts with Mot1, TFIIA, and TATA-binding protein to confer promoterspecific transcriptional control in Saccharomyces cerevisiae. Mol. Cell. Biol. 17:287-295.
31. Owen-Hughes, T., R. T. Utley, C. L. Peterson, and J. L. Workman. 1996. Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273:513-516.
32. Peterson, C. L. 1996. Multiple SWItches to turn on chromatin? Curr. Opin. Genet. Dev. 6:171-175.
33. Piatti, S., R. Tazzi, A. Pizzagalli, P. Plevani, and G. Lucchini. 1992. Control of DNA synthesis genes in budding yeast: involvement of the transcriptional modulator MOTl in the expression of the DNA polymerase alpha gene. Chromosoma 102:S107-S113.
34. Poon, D., A. M. Campbell, Y. Bai, and P. A. Weil. 1994. Yeast Taf170 is encoded by MOT1 and exists in a TBP-TAF complex distinct from TFIID. J. Biol. Chem. 269:23135-23140.
35. Sehneider, K. R., R. L. Smith, and E. K. O'Shea. 1994. Phosphate-regulated inactivation of the kinase PHO80-PHO85 by the CDK inhibitor PHO81. Science 266:122-126.
36. Schuler, G. D., S. F. Altschul, and D. J. Lipman. 1991. A workbench for multiple alignment construction and analysis. Prot. Struct. Funct. Genet. 9:180-190.
37. Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
38. Starr, D. B., and D. K. Hawley. 1991. TFIID binds in the minor groove of the TATA box. Cell 67:1231-1240.
39. Tamkun, J. W., R. Deuring, M. P. Scott, M. Kissinger, A. M. Pattatucci, T. C. Kaufman, and J. A. Kennision. 1992. brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SW12. Cell 68:561-572.
40. Tsukiyama, T., C. Daniel, J. Tamkun, and C. Wu. 1995. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1026.
41. Tsukiyama, T., and C. Wu. 1995. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83:1011-1020.
42. Vallee, R. B., and M. P. Sheetz. 1996. Targeting of motor proteins. Science 271:1539-1544.
43. 41a.Wang, D., and D. T. Auble. Unpublished data.
44. Young, M. C., D. E. Schultz, D. Ring, and P. H. von Hippel. 1994. Kinetic parameters of the translocation of bacteriophage T4 gene 41 protein helicase on single-stranded DNA. J. Mol. Biol. 235:1447-1458.