-
1
-
-
0033920304
-
Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3′ nontranslated region are essential for virus replication in vivo
-
Kolykhalov, A.A., Mihalik, K., Feinstone, S.M. & Rice, C.M. Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3′ nontranslated region are essential for virus replication in vivo. J. Virol. 74, 2046-2051 (2000).
-
(2000)
J. Virol.
, vol.74
, pp. 2046-2051
-
-
Kolykhalov, A.A.1
Mihalik, K.2
Feinstone, S.M.3
Rice, C.M.4
-
2
-
-
0029970903
-
The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3)
-
Tai, C.L., Chi, W.K., Chen, D.S. & Hwang, L.H. The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3). J. Virol. 70, 8477-8484 (1996).
-
(1996)
J. Virol.
, vol.70
, pp. 8477-8484
-
-
Tai, C.L.1
Chi, W.K.2
Chen, D.S.3
Hwang, L.H.4
-
3
-
-
0030735535
-
DNA helicase activity of the hepatitis C virus nonstructural protein 3
-
Gwack, Y., Kim, D.W., Han, J.H. & Choe, J. DNA helicase activity of the hepatitis C virus nonstructural protein 3. Eur. J. Biochem. 250, 47-54 (1997).
-
(1997)
Eur. J. Biochem.
, vol.250
, pp. 47-54
-
-
Gwack, Y.1
Kim, D.W.2
Han, J.H.3
Choe, J.4
-
4
-
-
0346463036
-
The nonstructural protein 3 protease/ helicase requires an intact protease domain to unwind duplex RNA efficiently
-
Frick, D.N., Rypma, R.S., Lam, A.M. & Gu, B. The nonstructural protein 3 protease/ helicase requires an intact protease domain to unwind duplex RNA efficiently. J. Biol. Chem. 279, 1269-1280 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1269-1280
-
-
Frick, D.N.1
Rypma, R.S.2
Lam, A.M.3
Gu, B.4
-
5
-
-
0036500976
-
The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding
-
Pang, P.S., Jankowsky, E., Planet, P.J. & Pyle, A.M. The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding. EMBO J. 21, 1168-1176 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 1168-1176
-
-
Pang, P.S.1
Jankowsky, E.2
Planet, P.J.3
Pyle, A.M.4
-
6
-
-
0033059980
-
A novel recombinant single-chain hepatitis C virus NS3-NS4A protein with improved helicase activity
-
Howe, A.Y. et al. A novel recombinant single-chain hepatitis C virus NS3-NS4A protein with improved helicase activity. Protein Sci. 8, 1332-1341 (1999).
-
(1999)
Protein Sci.
, vol.8
, pp. 1332-1341
-
-
Howe, A.Y.1
-
7
-
-
0033609061
-
Modulation of hepatitis C virus NS3 protease and helicase activities through the interaction with NS4A
-
Gallinari, P. et al. Modulation of hepatitis C virus NS3 protease and helicase activities through the interaction with NS4A. Biochemistry 38, 5620-5632 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 5620-5632
-
-
Gallinari, P.1
-
8
-
-
0030741828
-
A point mutation abolishes the helicase but not the nucleoside triphosphatase activity of hepatitis C virus NS3 protein
-
Heilek, G.M. & Peterson, M.G. A point mutation abolishes the helicase but not the nucleoside triphosphatase activity of hepatitis C virus NS3 protein. J. Virol. 71, 6264-6266 (1997).
-
(1997)
J. Virol.
, vol.71
, pp. 6264-6266
-
-
Heilek, G.M.1
Peterson, M.G.2
-
9
-
-
0342872087
-
Towards defining a minimal functional domain for NTPase and RNA helicase activities of the hepatitis C virus NS3 protein
-
Kim, D.W., Gwack, Y., Han, J.H. & Choe, J. Towards defining a minimal functional domain for NTPase and RNA helicase activities of the hepatitis C virus NS3 protein. Virus Res. 49, 17-25 (1997).
-
(1997)
Virus Res.
, vol.49
, pp. 17-25
-
-
Kim, D.W.1
Gwack, Y.2
Han, J.H.3
Choe, J.4
-
10
-
-
84984586736
-
Hepatitis C virus NS3 RNA helicase activity is modulated by the two domains of NS3 and NS4A
-
Kuang, W.F. et al. Hepatitis C virus NS3 RNA helicase activity is modulated by the two domains of NS3 and NS4A. Biochem. Biophys. Res. Commun. 317, 211-217 (2004).
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.317
, pp. 211-217
-
-
Kuang, W.F.1
-
11
-
-
2542468381
-
The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity
-
Levin, M.K., Wang, Y.H. & Patel, S.S. The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity. J. Biol. Chem. 279, 26005-26012 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26005-26012
-
-
Levin, M.K.1
Wang, Y.H.2
Patel, S.S.3
-
12
-
-
0036880196
-
Helicase mechanisms and the coupling of helicases k within macromolecular machines Part I: Structures and properties of isolated helicases
-
Delagoutte, E. & von Hippel, P.H. Helicase mechanisms and the coupling of helicases k within macromolecular machines Part I: Structures and properties of isolated helicases. Q. Rev. Biophys. 35, 431-478 (2002).
-
(2002)
Q. Rev. Biophys.
, vol.35
, pp. 431-478
-
-
Delagoutte, E.1
Von Hippel, P.H.2
-
13
-
-
0035951425
-
A general model for nucleic acid helicases and their "coupling" within macromolecular machines
-
von Hippel, P.H. & Delagoutte, E. A general model for nucleic acid helicases and their "coupling" within macromolecular machines. Cell 104, 177-190 (2001).
-
(2001)
Cell
, vol.104
, pp. 177-190
-
-
Von Hippel, P.H.1
Delagoutte, E.2
-
14
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman, T.M. & Bjornson, K.P. Mechanisms of helicase-catalyzed DNA unwinding. Annu. Rev. Biochem. 65, 169-214 (1996).
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
15
-
-
0033786801
-
Structure and function of hexameric helicases
-
Patel, S.S. & Picha, K.M. Structure and function of hexameric helicases. Annu. Rev. Biochem. 69, 651-697 (2000).
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 651-697
-
-
Patel, S.S.1
Picha, K.M.2
-
16
-
-
0027950513
-
DNA helicases: Enzymes with essential roles in all aspects of DNA metabolism
-
Matson, S.W., Bean, D.W. & George, J.W. DNA helicases: enzymes with essential roles in all aspects of DNA metabolism. BioEssays 16, 13-22 (1994).
-
(1994)
BioEssays
, vol.16
, pp. 13-22
-
-
Matson, S.W.1
Bean, D.W.2
George, J.W.3
-
17
-
-
0035895346
-
Unwinding of unnatural substrates by a DNA helicase
-
Tackett, A.J., Morris, P.D., Dennis, R., Goodwin, T.E. & Raney, K.D. Unwinding of unnatural substrates by a DNA helicase. Biochemistry 40, 543-548 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 543-548
-
-
Tackett, A.J.1
Morris, P.D.2
Dennis, R.3
Goodwin, T.E.4
Raney, K.D.5
-
18
-
-
2542474124
-
Backbone tracking by the SF2 helicase NPH-II
-
Kawaoka, J., Jankowsky, E. & Pyle, A.M. Backbone tracking by the SF2 helicase NPH-II. Nat. Struct. Mol. Biol. 11, 526-530 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 526-530
-
-
Kawaoka, J.1
Jankowsky, E.2
Pyle, A.M.3
-
19
-
-
2542432027
-
Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA
-
Byrd, A.K. & Raney, K.D. Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA. Nat. Struct. Mol. Biol. 11, 531-538 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 531-538
-
-
Byrd, A.K.1
Raney, K.D.2
-
20
-
-
0033586732
-
DNA helicases displace streptavidin from biotin-labeled oligonucleotides
-
Morris, P.D. & Raney, K.D. DNA helicases displace streptavidin from biotin-labeled oligonucleotides. Biochemistry 38, 5164-5171 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 5164-5171
-
-
Morris, P.D.1
Raney, K.D.2
-
21
-
-
0035808566
-
Active Disruption of an RNA-Protein Interaction by a DExH/D RNA Helicase
-
Jankowsky, E., Gross, C.H., Shuman, S. & Pyle, A.M. Active Disruption of an RNA-Protein Interaction by a DExH/D RNA Helicase. Science 291, 121-125(2001).
-
(2001)
Science
, vol.291
, pp. 121-125
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
22
-
-
2442513338
-
The DNA-unwinding mechanism of the ring helicase of bacteriophage T7
-
Jeong, Y.J., Levin, M.K. & Patel, S.S. The DNA-unwinding mechanism of the ring helicase of bacteriophage T7. Proc. Natl. Acad. Sci. USA 101, 7264-7269 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7264-7269
-
-
Jeong, Y.J.1
Levin, M.K.2
Patel, S.S.3
-
23
-
-
0027373139
-
Interactions of bacteriophage T7 DNA primase/helicase protein with single-stranded and double-stranded DNAs
-
Hingorani, M.M. & Patel, S.S. Interactions of bacteriophage T7 DNA primase/helicase protein with single-stranded and double-stranded DNAs. Biochemistry 32, 12478-12487 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 12478-12487
-
-
Hingorani, M.M.1
Patel, S.S.2
-
24
-
-
0029072199
-
Interactions of Escherichia coli primary replicative helicase DnaB protein with single-stranded DNA. The nucleic acid does not wrap around the protein hexamer
-
Bujalowski, W. & Jezewska, M.J. Interactions of Escherichia coli primary replicative helicase DnaB protein with single-stranded DNA. The nucleic acid does not wrap around the protein hexamer. Biochemistry 34, 8513-8519 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 8513-8519
-
-
Bujalowski, W.1
Jezewska, M.J.2
-
25
-
-
0029784485
-
A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain
-
Preugschat, F., Averett, D.R., Clarke, B.E. & Porter, D.J.T. A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain. J. Biol. Chem. 271, 24449-24457 (1996).
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 24449-24457
-
-
Preugschat, F.1
Averett, D.R.2
Clarke, B.E.3
Porter, D.J.T.4
-
26
-
-
0038607629
-
ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase
-
Levin, M.K., Gurjar, M.M. & Patel, S.S. ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase. J. Biol. Chem. 278, 23311-23316 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 23311-23316
-
-
Levin, M.K.1
Gurjar, M.M.2
Patel, S.S.3
-
27
-
-
0033527562
-
The helicase from hepatitis C virus is active as an oligomer
-
Levin, M.K. & Patel, S.S. The helicase from hepatitis C virus is active as an oligomer. J. Biol. Chem. 274, 31839-31846 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 31839-31846
-
-
Levin, M.K.1
Patel, S.S.2
-
28
-
-
0037119352
-
Helicase from hepatitis C virus, energetics of DNA binding
-
Levin, M.K. & Patel, S.S. Helicase from hepatitis C virus, energetics of DNA binding. J. Biol. Chem. 277, 29377-29385 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29377-29385
-
-
Levin, M.K.1
Patel, S.S.2
-
29
-
-
0030583249
-
Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein
-
Gwack, Y., Kim, D.W., Han, J.H. & Choe, J. Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein. Biochem. Biophys. Res. Commun. 225, 654-659 (1996).
-
(1996)
Biochem. Biophys. Res. Commun.
, vol.225
, pp. 654-659
-
-
Gwack, Y.1
Kim, D.W.2
Han, J.H.3
Choe, J.4
-
30
-
-
0024292414
-
Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton
-
Leroy, J.L., Kochoyan, M., Huynh-Dinh, T. & Gueron, M. Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton. J. Mol. Biol. 200, 223-238 (1988).
-
(1988)
J. Mol. Biol.
, vol.200
, pp. 223-238
-
-
Leroy, J.L.1
Kochoyan, M.2
Huynh-Dinh, T.3
Gueron, M.4
-
31
-
-
0029120978
-
Terminal base pairs of oligodeoxynucleotides: Imino proton exchange and fraying
-
Nonin, S., Leroy, J.L. & Gueron, M. Terminal base pairs of oligodeoxynucleotides: imino proton exchange and fraying. Biochemistry 34, 10652-10659 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 10652-10659
-
-
Nonin, S.1
Leroy, J.L.2
Gueron, M.3
-
32
-
-
0032555119
-
Kinetics of conformational fluctuations in DNA hairpin-loops
-
Bonnet, G., Krichevsky, O. & Libchaber, A. Kinetics of conformational fluctuations in DNA hairpin-loops. Proc. Natl. Acad. Sci. USA 95, 8602-8606 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8602-8606
-
-
Bonnet, G.1
Krichevsky, O.2
Libchaber, A.3
-
33
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
Singleton, M.R., Dillingham, M.S., Gaudier, M., Kowalczykowski, S.C. & Wigley, D.B. Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432, 187-193 (2004).
-
(2004)
Nature
, vol.432
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
34
-
-
0031563796
-
The RecBCD enzyme initiation complex for DNA unwinding: Enzyme positioning and DNA opening
-
Farah, J.A. & Smith, G.R. The RecBCD enzyme initiation complex for DNA unwinding: enzyme positioning and DNA opening. J. Mol. Biol. 272, 699-715 (1997).
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 699-715
-
-
Farah, J.A.1
Smith, G.R.2
-
35
-
-
0033527761
-
An oligomeric form of E. coli UvrD is required for optimal helicase activity
-
Ali, J.A., Maluf, N.K. & Lohman, T.M. An oligomeric form of E. coli UvrD is required for optimal helicase activity. J. Mol. Biol. 293, 815-834 (1999).
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 815-834
-
-
Ali, J.A.1
Maluf, N.K.2
Lohman, T.M.3
-
36
-
-
0037069390
-
Pre-steady-state DNA unwinding by bacteriophage T4 Dda helicase reveals a monomeric molecular motor
-
Nanduri, B., Byrd, A.K., Eoff, R.L., Tackett, A.J. & Raney, K.D. Pre-steady-state DNA unwinding by bacteriophage T4 Dda helicase reveals a monomeric molecular motor. Proc. Natl. Acad. Sci. USA 99, 14722-14727 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14722-14727
-
-
Nanduri, B.1
Byrd, A.K.2
Eoff, R.L.3
Tackett, A.J.4
Raney, K.D.5
-
37
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with DNA substrate indicate an inchworm mechanism
-
Velankar, S.S., Soultanas, P., Dillingham, M.S., Subramanya, H.S. & Wigley, D.B. Crystal structures of complexes of PcrA DNA helicase with DNA substrate indicate an inchworm mechanism. Cell 97, 75-84 (1999).
-
(1999)
Cell
, vol.97
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
38
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim, J.L. et al. Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure 6, 89-100 (1998).
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
-
39
-
-
0031003997
-
Thermodynamics and kinetics of a Brownian motor
-
Astumian, R.D. Thermodynamics and kinetics of a Brownian motor. Science 276, 917-922 (1997).
-
(1997)
Science
, vol.276
, pp. 917-922
-
-
Astumian, R.D.1
-
40
-
-
30644465539
-
Molecular motors: Theory and experiment
-
(eds. Fall, C., Marland, E., Wagner, J. & Tyson, J.) Springer, New York
-
Mogilner, A., Wang, H., Elston, T. & Oster, G. Molecular motors: theory and experiment. In Mathematical Biology (eds. Fall, C., Marland, E., Wagner, J. & Tyson, J.) (Springer, New York, 2001).
-
(2001)
Mathematical Biology
-
-
Mogilner, A.1
Wang, H.2
Elston, T.3
Oster, G.4
-
41
-
-
0036681047
-
Ratchets, power strokes, and molecular motors
-
Wang, H. & Oster, G. Ratchets, power strokes, and molecular motors. Appl. Phys. A 75, 315-323 (2002).
-
(2002)
Appl. Phys. A
, vol.75
, pp. 315-323
-
-
Wang, H.1
Oster, G.2
-
42
-
-
0031031958
-
Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase
-
Ali, J.A. & Lohman, T.M. Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase. Science 275, 377-380 (1997).
-
(1997)
Science
, vol.275
, pp. 377-380
-
-
Ali, J.A.1
Lohman, T.M.2
-
43
-
-
0034635172
-
Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: Measurement of step size and translocation speed
-
Dillingham, M.S., Wigley, D.B. & Webb, M.R. Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed. Biochemistry 33, 205-212 (2000).
-
(2000)
Biochemistry
, vol.33
, pp. 205-212
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
44
-
-
0037590607
-
RecBCD enzyme is a bipolar DNA helicase
-
Dillingham, M.S., Spies, M. & Kowalczykowski, S.C. RecBCD enzyme is a bipolar DNA helicase. Nature 423, 893-897 (2003).
-
(2003)
Nature
, vol.423
, pp. 893-897
-
-
Dillingham, M.S.1
Spies, M.2
Kowalczykowski, S.C.3
-
45
-
-
0028817781
-
C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity
-
Kim, D.W., Gwack, Y., Han, J.H. & Choe, J. C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity. Biochem. Biophys. Res. Commun. 215, 160-166 (1995).
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.215
, pp. 160-166
-
-
Kim, D.W.1
Gwack, Y.2
Han, J.H.3
Choe, J.4
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